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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050737 ID=TCONS_00050737|Name=TCONS_00050737|organism=Clytia hemisphaerica|type=transcript|length=3382bpRun BLAST on NCBI transcript from alignment at scaffold_185:205206..224002+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050737 ID=TCONS_00050737|Name=TCONS_00050737|organism=Clytia hemisphaerica|type=transcript|length=18797bp|location=Sequence derived from alignment at scaffold_185:205206..224002+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00050737 vs. Swiss-Prot (Human)
Match: ANKF1 (Ankyrin repeat and fibronectin type-III domain-containing protein 1 OS=Homo sapiens GN=ANKFN1 PE=2 SV=2) HSP 1 Score: 219.164 bits (557), Expect = 2.794e-59 Identity = 153/505 (30.30%), Postives = 264/505 (52.28%), Query Frame = 1
Query: 787 RLDCGHFKXEPPSQPPIISTAPLSSDSIVVTLNAPTSRENDTKEVITKYRVEWSKDENFNTMEGHELLEDKRHLCCTIPSLPKNTTLYVRAQSGNHKGFSMYGYPEPRSVSPSSWHELDNSLPRYHGVSDKLHHLVDDVLXXXXXXXXXXXXXXXXXXAPPCEAPPLRSPKTKNPSRKLVKSMSKYTNLIFNSAPKLLKKIKGRGIYLAALLYNTDQSKVLVTMDENLPVVECDDNHAKLFNQEFYWFSKTSCTWEDIQHMLYTSTKSHSSQSV-HIRRKLLESALVLMNATGVNDLGPIHDKPFRDEHGSVLLLAVNCVXXXXXXXXXXXXWIPVQKFLKKSTHSSNSDSVMVPERLIPCVQEQVCAHEGSRTXXXXXXXXXXXXXRTSMDTLSIIVPNAHTNVLPHVKIQDVPNVTKDQWQWLKSFNDINGLVSNTKESNQSESMFERRLKIAIRKLFNALNISTDVALSHRVYDQEVIELNSDVMFILIFP--NEVCTPPNQ 2292
R+ G P P + SS S+ V+ P S V+T+Y+VEWS E+F+ + G ++++ + L CTI L +V+ + N KG+ P SPS+W + D+ PR+ G S+ L L+ V ++ + S C S K + RK +S+S+ +F+S+ K +K +K RG+Y+A + Y D +LVT ++ +P+VE DD+H Q+F WF+K SC WEDI+ + + S SS +V R+K+L + L N G ++LG ++ +P +D HG++L++ + V KW+ + K + S + + L+ +Q+ + H+ S +L GLYLGYLKL +S+D + ++V N+L HVKI++ N+++++W+W++ + + S S+ +F L++A++ L +NI A + R+Y QEV+E+ +V F+L+ P ++VCT P Q
Sbjct: 260 RMKTGFEHARAPEMPTNVCLMVTSSTSLTVSFQEPLSV---NAAVVTRYKVEWSMSEDFSPLAGEIIMDNLQTLRCTITGLTMGQQYFVQVSAYNMKGWGPAQTTTPACASPSNWKDYDDREPRHKGQSEVLEGLLQQVRALHQHYS--------------CR----ESTKLQTTGRK--QSVSRSLKHLFHSSNKFVKTLK-RGLYIAVIFYYKD--NILVTNEDQVPIVEIDDSHTSSITQDFLWFTKLSCMWEDIRWLRQSIPISSSSSTVLQTRQKMLAATAQLQNLLGTHNLGRVYYEPIKDRHGNILIVTIREV--EMLYSFFNGKWMQISKLQSQRKSLSTPEEPTALDILLITIQDILSYHKRSHQRLFPGLYLGYLKLCSSVDQIKVLVTQKLPNILCHVKIRENNNISREEWEWIQKLSGSESMESVDHTSDCPMQLFFYELQMAVKALLQQINIPLHQARNFRLYTQEVLEMGHNVSFLLLLPASDDVCTAPGQ 736 HSP 2 Score: 104.375 bits (259), Expect = 1.195e-22 Identity = 56/154 (36.36%), Postives = 88/154 (57.14%), Query Frame = 2
Query: 359 GLDALFDAIERQEFSEVRRLI---TIHDVSLNELNGDSFTPLDVALMLNETDISNLLLHYGAKENPAFHEPKERTSHLESLIETAEENVNNYKTTLLN--YTGDTKENERQLREWEWRLYFLRIMQNGFTNAEPPSQPPIISTAPLSSDSIVVT 805
G +A+F+A+E+Q+ V+ L+ T ++ LN N + TPLD+A+M N I+ +LL GA+E+P F + R HL +L++ A+E V+ + N +T D E E+QL+ WEWR R M+ GF +A P P + SS S+ V+
Sbjct: 137 GNEAMFEAVEQQDMDAVQILLYQYTPEELDLNTPNSEGLTPLDIAIMTNNVPIARILLRTGARESPHFVSLESRAMHLNTLVQEAQERVSELSAQVENEGFTLDNTEKEKQLKAWEWRYRLYRRMKTGFEHARAPEMPTNVCLMVTSSTSLTVS 290 The following BLAST results are available for this feature:
BLAST of TCONS_00050737 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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