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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050398 ID=TCONS_00050398|Name=TCONS_00050398|organism=Clytia hemisphaerica|type=transcript|length=3168bp
GAAAGTTGTATCTTGTTTGTTTGTCACTCTCACTCGCTCTGTCGTATACT
TGACTTTTTTTCATGAAACAAccAAGATTCGTATTACTTCCCATCCTCTC
ACCTTCGACACACCATTTGGTTGGACAGAAAGAATCAAGACCGCATTGAA
AACTGGTTAACGGAACAACACGAATATACCGGATACCCGCCACCTGAAAC
TGAATCTGTTATCTCCTTGAGGTCAAGCAGTGCGGTCGATCTGTTAACAG
GCGAACGCTCTTTGATTGACGAAGTGAAATATAAATCAGAGGAAAGGATA
CAACAAACACATTTTTTGGAAGTCGATGATCCCAAACAAAACGGATTGTT
TAAACGCTATAATTCGCCTGATTGTATTCGTCGAAGATATTTTAGCCCGA
GATCTGACCCCGCTTTGAATACGGTCGGTAAGCAGTCTAGTTTGCTTCCA
ACGAGGAGTGCATCGTACAAACAATTGTGGCATTCTAACGGTGAATACTC
TTCCACTGATCATCGATTGAATCCAACTTTTTATCAGGCGGGTAAAGGAA
ATACGTTTCCGAGACGAGGTGGAAAATTTGCCGGTCAACGAGAATTCTTG
CAAACTCAATCCACCGAGAATATGGGACAGCAAATGGATAAATACCAACA
GAAAGTCTTATTGAACCCTTACGCTTCTGTTACTTCTACTCAACATGATT
CAGACAAAGAAAACAGAATTCTGAACAGACAGGTCAACAAGCAAGTAGAA
GAATCTTTCTTAGTTGGTCGTACTTTCGTTTTGAACGGTATAAGTTTGCA
CAACAAGCCAGATGTTTCTGATCACACATCTACACCTGGTCGAAACAGTA
GTGTGGCTGCAACGCAAAATACTCTTTATAATTCTACTGAAATCATCGAC
ACAAGCACTTCAAATAAAACAGATAACGAGAAAGTTTCAATGAACAATTC
TTTAATCAAAGAGGTCGAAGAGAGAGTGCCTTCACCTATTTCCCACACCG
AACCTCGGTCCACCTCCACTTATCACCAGCGTGTTGTGTCAGCACCTGCA
ACCACTGATAGCACTCATCTACAGCGTGATCCTTACTGGCGTGGAGAAAC
GGCCCAACGAAAAATCTCACACGAAGTCCGTAAAGTGAAAGCGTTTTCTT
GGCCTAAACGAGCCGTTCTTCCACAACAAACAGATAAAGATTTCATGGAA
AGAGTCACACGAAAACAGACTTTTAATAgtgatcaaaataaaacaaacga
aACAAACTCTATACCAGATGACGCCAGTGATCAAAGCGATGTTCCTCCTG
CACGACCGCCTCTTCCCGCCGAACACATGTACCCGAAGCGCGATAGCTCG
TCCGCCCATCGCACGTCGTCGCTTCGTTCCACGAGCCAGTTATCTCAAGC
GTGCTCGCAGATCAGTGAGGAGGAGATTATCCCTCAAGAAATCAAGCATG
ATGAACATCAAGCGCTTTCCGAATCAAGTTATGCTTCGTCGTCTGCTCCC
TCACAAAATTTCCAGCACAGCTCCACGTGTGAACTTTCAAAACGAGTCAG
TATGAGCCTCAAGGATCTCATTCGAATACACGAGAAAGAAATAGCGCGCG
TTTCAGGAGCGTTCTCAACGCGTACGCTGGACAAGATCGACGAGAAAGCA
TCTTCGGTAAAATCACGTGACGAGGCACATGTTGATCATTCCAAATGGAA
ACGTCACACCACCATCGGTCTGCTCGGTGATTTCACTTCCTATCCCTCAG
AGCGATCCGCAAGCGGACCGTTAAGCCCGCGTTCGGACGGCTCTTTACTT
TCACCAGATGCGCGCTCTTCGTCACGTCATTCTGCGCGCAAATTCAACAT
CACGATTTCGTCACGTGCTGCATCTTCAGACGCAAGTGAACTTGTCACCA
GTCCCCTATCACCCAAAGATAACAGTGCCTTCAAAAGCCCACCGCCCAAT
ATTTTACCCAAACCGAAAAAAGTGACGACCAGCTCTATGGTGACGTCTCC
GTTACAGACCGTGGTCGCACCTCTGAAGGCGCAAACACATGAAGAGTATA
ACGTACCCTTTGAGACGTCCTACATTGCTCACACGTCCGATACCAGCGTT
CAAACTGAAGGGAACTTCTCCCGTACGGCTTCATTCCGAAAAAATGAGAA
ACGCGTACGTGAACTAACAGAAGAAAAAGAACTGATGAAAATTTCCTTCG
AGGAGGAACGGAAAGAACTCAATAGGAAATTGCAAGAACAAAAGAAAGTG
GCCAACGCTTATCAAAAGCTTGAAGACAGATATCGTAAGAAAGTGTACGA
ACTTCAGAAAGCCATGAAAATGTGCAGTTGCTCGGGGAGTCGATATTTCG
CCAATGGAATCGATAACTTTCGTCAAGATCATTCGTCACCGGTCAACGAT
CATCCTAACGACATCTCCGTTCAAAAGGTGGATGGAATTCTCCACCAATT
GGAAGCTTGGTTGAACCATCACACAAATGGTATCACCTACCCTGACTCTG
ACATCTCTTCCCTTTTCGGTTCAAACGCAGCGGACGAAGTTTATGTACGG
AACAGTAAGCGAGCGAGCGATCATTACAACGGTAACGGGTCAATTCCGCT
GGATAGGATTATTGACCGCATTGATGCGACCTCTGTTTGATAGATTGCAA
TTTGCTCAATATCGAAGTGGGACATTTACATGGAAACATTTGCATCGGGA
TCGAGGGCGTATGACACTAACGAGGGCATATTTGTTTGTCATCGCTAGAA
ATCTCGGACGAGCTTCGCTATCATTTAAATTTTTCCCTTCCATGTTGAAT
TCTTTGAGTTTGTCTCTGATAAGTCCCGAGAAAGCAcacaaatcaatcaa
aaaagttAGAATGCGACAATTTGCTCAACCCTATAGAGGGTGCATTGTTA
TGTTGCGATAAGTTGTTTTAGTGCCCAAATAGAAACATTTACTTTTGCGT
TACTTGATGTAGTGAGCCTGTTggagtatatttttgtaaatatatgcAAA
TATCTTTAGGtctattttttttggaaatgatcAGATAATTTATGCGGAAT
GCAATGACGTAATTTTCCctgagttttctttttttttgccaaatcgtaag
aataccctaagaataccctctagggtgaatttcacagaatttgataaacA
TACAGCTTCCTTCGTTAG Run BLAST on NCBI transcript from alignment at scaffold_17:174875..179994- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050398 ID=TCONS_00050398|Name=TCONS_00050398|organism=Clytia hemisphaerica|type=transcript|length=5120bp|location=Sequence derived from alignment at scaffold_17:174875..179994- (Clytia hemisphaerica)
GAAAGTTGTATCTTGTTTGTTTGTCACTCTCACTCGCTCTGTCGTATACT
TGACTTTTTTTCATGAAACAAGTAAGTAAACCACTCTTCCTTGTCATGAC
TGTCCCTTTCAATACCTACTGTTTTTACGAACTTTTAATAACAAATAAAC
CAGCATTTTTCGGCTATCGGTATCGATTCATGAGTGATTCGGTGCGGTAA
AAGGTCACATAGTCTGCATCACGAGTGACGAGAGGAGAGCAATGTAATTT
TTGTTTTGATTNAAAGGTCACATAGTCTGCATCACGAGTGACGAGAGGAG
AGCAATGTAATTTGTGTTTTGATACAAAGAGGATGTCACAATAGCTAGAT
AACGATCGGTAGAGAAAGCATCTCTTAAATCTCCTTTCTATTCTATATAT
AATGTAGACTATAAAAAATTATAAACATGAAAATAGTCACTTGTTATGCT
ATAGCAAGGTTGTTTAAACGAATCATGAAAAGTTTTATCGATTATGTTGG
TTGTGAGTTTTAGATTAAAACCATGTATTTCATTTTACAAGTTGTTTTAA
AGTGAGTATTTTTCCCTGACCTTTCTTCATTTCATGCTGTAGTATCTAGT
ATAAAATATATCATACACGAACTAAGGAATTTCAACTGTTAAGTAAATAC
CTTGTTTCACTAAATATTCGATTTTCATTTTTAACCTTCTGATTTTTTTC
TTCTTTCAGCCAAGATTCGTATTACTTCCCATCCTCTCACCTTCGACACA
CCATTTGGTTGGACAGAAAGAATCAAGACCGCATTGAAAACTGGTTAACG
GAACAACACGAATATACCGGATACCCGCCACCTGAAACTGAATCTGTTAT
CTCCTTGAGGTCAAGCAGTGCGGTCGATCTGTTAACAGGCGAACGCTCTT
TGATTGACGAAGTGAAATATAAATCAGAGGAAAGGATACAACAAACACAT
TTTTTGGAAGTCGATGATCCCAAACAAAACGGATTGTTTAAACGCTATAA
TTCGCCTGATTGTATTCGTCGAAGATATTTTAGCCCGAGATCTGACCCCG
CTTTGAATACGGTCGGTAAGCAGTCTAGTTTGCTTCCAACGAGGAGTGCA
TCGTACAAACAATTGTGGCATTCTAACGGTGAATACTCTTCCACTGATCA
TCGATTGAATCCAACTTTTTATCAGGCGGGTAAAGGAAATACGTTTCCGA
GACGAGGTGGAAAATTTGCCGGTCAACGAGAATTCTTGCAAACTCAATCC
ACCGAGAATATGGGACAGCAAATGGATAAATACCAACAGAAAGTCTTATT
GAACCCTTACGCTTCTGTTACTTCTACTCAACATGATTCAGACAAAGAAA
ACAGAATTCTGAACAGACAGGTCAACAAGCAAGTAGAAGAATCTTTCTTA
GTTGGTCGTACTTTCGTTTTGAACGGTATAAGTTTGCACAACAAGCCAGA
TGTTTCTGATCACACATCTACACCTGGTCGAAACAGTAGTGTGGCTGCAA
CGCAAAATACTCTTTATAATTCTACTGAAATCATCGACACAAGCACTTCA
AATAAAACAGATAACGAGAAAGTTTCAATGAACAATTCTTTAATCAAAGA
GGTCGAAGAGAGAGTGCCTTCACCTATTTCCCACACCGAACCTCGGTCCA
CCTCCACTTATCACCAGCGTGTTGTGTCAGCACCTGCAACCACTGATAGC
ACTCATCTACAGCGTGATCCTTACTGGCGTGGAGAAACGGCCCAACGAAA
AATCTCACACGAAGTCCGTAAAGTGAAAGCGTTTTCTTGGCCTAAACGAG
CCGTTCTTCCACAACAAACAGATAAAGATTTCATGGAAAGAGTCACACGA
AAACAGACTTTTAATAGTGATCAAAATAAAACAAACGAAACAAACTCTAT
ACCAGATGACGCCAGTGATCAAAGCGATGTTCCTCCTGCACGACCGCCTC
TTCCCGCCGAACACATGTACCCGAAGCGCGATAGCTCGTCCGCCCATCGC
ACGTCGTCGCTTCGTTCCACGAGCCAGTTATCTCAAGCGTGCTCGCAGAT
CAGTGAGGAGGAGATTATCCCTCAAGAAATCAAGCATGATGAACATCAAG
CGCTTTCCGAATCAAGTTATGCTTCGTCGTCTGCTCCCTCACAAAATTTC
CAGCACAGCTCCACGTGTGAACTTTCAAAACGAGTCAGTATGAGCCTCAA
GGATCTCATTCGAATACACGAGAAAGAAATAGCGCGCGTTTCAGGAGCGT
TCTCAACGCGTACGCTGGACAAGATCGACGAGAAAGCATCTTCGGTAAAA
TCACGTGACGAGGCACATGTTGATCATTCCAAATGGAAACGTCACACCAC
CATCGGTCTGCTCGGTGATTTCACTTCCTATCCCTCAGAGCGATCCGCAA
GCGGACCGTTAAGCCCGCGTTCGGACGGCTCTTTACTTTCACCAGATGCG
CGCTCTTCGTCACGTCATTCTGCGCGCAAATTCAACATCACGATTTCGTC
ACGTGCTGCATCTTCAGACGCAAGTGAACTTGTCACCAGTCCCCTATCAC
CCAAAGATAACAGTGCCTTCAAAAGCCCACCGCCCAATATTTTACCCAAA
CCGAAAAAAGTGACGACCAGCTCTATGGTGACGTCTCCGTTACAGACCGT
GGTCGCACCTCTGAAGGCGCAAACACATGAAGAGTATAACGTACCCTTTG
AGACGTCCTACATTGCTCACACGTCCGATACCAGCGTTCAAACTGAAGGG
AACTTCTCCCGTACGGCTTCATTCCGAAAAAATGAGAAACGCGTACGTGA
ACTAACAGAAGAAAAAGAACTGATGAAAATTTCCTTCGAGGAGGAACGGA
AAGAACTCAATAGGAAATTGCAAGAACAAAAGAAAGTGGCCAACGCTTAT
CAAAAGCTTGAAGACAGATATCGTAAGAAAGTGTACGAACTTCAGAAAGC
CATGAAAATGTGCAGTTGCTCGGGGAGTCGATATTTCGCCAATGGAATCG
ATAACTTTCGGTAAGATCCTAGTTCTATCATGAAGGTAATAAAGATTGAT
GGAGAGTCAATGCCTTTTGTTCTATTCTGATTTATCATCGGAAGCAAACA
GCTGTTTGGTTGCTTTGGGAATAAGATGATTAAGTTTTGGTATACTCGTG
GGAATATTTAAGATGAATGAAAAGACATTTCATTTTTAACAAGTATATTG
AAATATAATAGCCTTGTCATGAAAAATTGAAAAAAAACTTCACATAATAA
GCACAATACTCTAGACTTCTAGGGGAAGCTGCCCATAAAGCCATCGATAG
ATTTAAAAAAGAATTACGTGTTACGATTAGGAACCTTGTATCGATCATTT
TGTCAGAGTATGAAAACCGCTGCCCACTTAGACGTGAAGATTTTAAGATA
AGAAACTTTCAATAATAATAATAATGTGATGCGACTCTTAATGTTCACAA
AATGCCAGCCCATCCTTATAAAATTAATATATTCTTTCATCCATAAATCA
GTTGAAACTATTTCGAATCGCATTTTGACTAAGATTTCTCGCAAAATTAA
GTATTTCAAAATCAACGGACCAGCCTCTTTCTGTTCTTATAAAGTTATAA
ATTGATGTTTTTTGCTTCCAATGATGGTGCATCAAAGAAAAGCCGCTTTG
AATAGATTTATAATAGATTTCATCTATCATTTAGGTCATTACCGAGACGT
TTTCTCTCCGTCTGTATCTTTATTACCTTCATGGTTCTATATAGATAAAC
TTTTTCATTTCTGCCCGATAAATTTTGCTTTACTTTAAGTAAAGATTAAC
TTTGGCGTGGATTTAATTTGACGAGTGGTCAAGATGCGATTTTTGGGCGG
GTATTCGGAAACAATGCATAAAACTACTCGTAAGTCTCGTAAGCTCAAAC
ACGCACAGGAACACAATTTTGTTCGAGTTAAGGAGTAAAGGTTATAAGGC
ATTGTTAACTGAATGTACCGTACAGCCTGTTCGAGTAAAGGAGACATTTG
AGTTAAAGAGATTCCACTGCTTACTGCTTAGAGGATGAGATTTTTAATCA
TATCTTTTCGGTTAATATAATTTGGCGGGTTTTGTCAAATTTCACCGAAT
TCAATCCCCGCCTTAATAAATGCAGTTAAGGGATCTTCATATTGACTGTT
TGCACGTTGACTTGTAAAGCTATTTAGCTTATCGGCTCAAAATTGTGCAG
ACGGATAAGGTACTGTATGAAGAGTTACACAGCCAGGAATCCGTGCGGTT
TAGTTTTTGCCATTTGAGATGACATTATTGCTATGAAATTAATTTCCTAA
CATTTTTTTTCTTTTCCCTTATAGTCAAGATCATTCGTCACCGGTCAACG
ATCATCCTAACGACATCTCCGTTCAAAAGGTGGATGGAATTCTCCACCAA
TTGGAAGCTTGGTTGAACCATCACACAAATGGTATCACCTACCCTGACTC
TGACATCTCTTCCCTTTTCGGTTCAAACGCAGCGGACGAAGTTTATGTAC
GGAACAGTAAGCGAGCGAGCGATCATTACAACGGTAACGGGTCAATTCCG
CTGGATAGGATTATTGACCGCATTGATGCGACCTCTGTTTGATAGATTGC
AATTTGCTCAATATCGAAGTGGGACATTTACATGGAAACATTTGCATCGG
GATCGAGGGCGTATGACACTAACGAGGGCATATTTGTTTGTCATCGCTAG
AAATCTCGGACGAGCTTCGCTATCATTTAAATTTTTCCCTTCCATGTTGA
ATTCTTTGAGTTTGTCTCTGATAAGTCCCGAGAAAGCACACAAATCAATC
AAAAAAGTTAGAATGCGACAATTTGCTCAACCCTATAGAGGGTGCATTGT
TATGTTGCGATAAGTTGTTTTAGTGCCCAAATAGAAACATTTACTTTTGC
GTTACTTGATGTAGTGAGCCTGTTGGAGTATATTTTTGTAAATATATGCA
AATATCTTTAGGTCTATTTTTTTTGGAAATGATCAGATAATTTATGCGGA
ATGCAATGACGTAATTTTCCCTGAGTTTTCTTTTTTTTTGCCAAATCGTA
AGAATACCCTAAGAATACCCTCTAGGGTGAATTTCACAGAATTTGATAAA
CATACAGCTTCCTTCGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050398-exon-scaffold_17-1575043694:179924..179994 | TCONS_00050398-exon-scaffold_17-1575043694:179924..179994 | Clytia hemisphaerica | exon |
| TCONS_00050398-exon-scaffold_17-1575043694:176985..179285 | TCONS_00050398-exon-scaffold_17-1575043694:176985..179285 | Clytia hemisphaerica | exon |
| TCONS_00050398-exon-scaffold_17-1575043694:174875..175670 | TCONS_00050398-exon-scaffold_17-1575043694:174875..175670 | Clytia hemisphaerica | exon |
| TCONS_00050398-exon-scaffold_17-1510915933:179924..179994 | TCONS_00050398-exon-scaffold_17-1510915933:179924..179994 | Clytia hemisphaerica | exon |
| TCONS_00050398-exon-scaffold_17-1510915933:176985..179285 | TCONS_00050398-exon-scaffold_17-1510915933:176985..179285 | Clytia hemisphaerica | exon |
| TCONS_00050398-exon-scaffold_17-1510915933:174875..175670 | TCONS_00050398-exon-scaffold_17-1510915933:174875..175670 | Clytia hemisphaerica | exon |
| TCONS_00050398-exon-scaffold_17-1491911889:179924..179994 | TCONS_00050398-exon-scaffold_17-1491911889:179924..179994 | Clytia hemisphaerica | exon |
| TCONS_00050398-exon-scaffold_17-1491911889:176985..179285 | TCONS_00050398-exon-scaffold_17-1491911889:176985..179285 | Clytia hemisphaerica | exon |
| TCONS_00050398-exon-scaffold_17-1491911889:174875..175670 | TCONS_00050398-exon-scaffold_17-1491911889:174875..175670 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:174875..179994 - |
Blast
The following BLAST results are available for this feature:
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