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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050397 ID=TCONS_00050397|Name=TCONS_00050397|organism=Clytia hemisphaerica|type=transcript|length=3236bp
aaaaaattataaacatgAAAATAGTCACTTGTTATGCTATAGCAAGGTTG
TTTAAACGAATCATGAAAAGTTTTATCGATTATGTTGGTTGTGAGTTTTA
GATTAAAACCATGTATTTCATTTTACAAGTTGTTTTAAAccAAGATTCGT
ATTACTTCCCATCCTCTCACCTTCGACACACCATTTGGTTGGACAGAAAG
AATCAAGACCGCATTGAAAACTGGTTAACGGAACAACACGAATATACCGG
ATACCCGCCACCTGAAACTGAATCTGTTATCTCCTTGAGGTCAAGCAGTG
CGGTCGATCTGTTAACAGGCGAACGCTCTTTGATTGACGAAGTGAAATAT
AAATCAGAGGAAAGGATACAACAAACACATTTTTTGGAAGTCGATGATCC
CAAACAAAACGGATTGTTTAAACGCTATAATTCGCCTGATTGTATTCGTC
GAAGATATTTTAGCCCGAGATCTGACCCCGCTTTGAATACGGTCGGTAAG
CAGTCTAGTTTGCTTCCAACGAGGAGTGCATCGTACAAACAATTGTGGCA
TTCTAACGGTGAATACTCTTCCACTGATCATCGATTGAATCCAACTTTTT
ATCAGGCGGGTAAAGGAAATACGTTTCCGAGACGAGGTGGAAAATTTGCC
GGTCAACGAGAATTCTTGCAAACTCAATCCACCGAGAATATGGGACAGCA
AATGGATAAATACCAACAGAAAGTCTTATTGAACCCTTACGCTTCTGTTA
CTTCTACTCAACATGATTCAGACAAAGAAAACAGAATTCTGAACAGACAG
GTCAACAAGCAAGTAGAAGAATCTTTCTTAGTTGGTCGTACTTTCGTTTT
GAACGGTATAAGTTTGCACAACAAGCCAGATGTTTCTGATCACACATCTA
CACCTGGTCGAAACAGTAGTGTGGCTGCAACGCAAAATACTCTTTATAAT
TCTACTGAAATCATCGACACAAGCACTTCAAATAAAACAGATAACGAGAA
AGTTTCAATGAACAATTCTTTAATCAAAGAGGTCGAAGAGAGAGTGCCTT
CACCTATTTCCCACACCGAACCTCGGTCCACCTCCACTTATCACCAGCGT
GTTGTGTCAGCACCTGCAACCACTGATAGCACTCATCTACAGCGTGATCC
TTACTGGCGTGGAGAAACGGCCCAACGAAAAATCTCACACGAAGTCCGTA
AAGTGAAAGCGTTTTCTTGGCCTAAACGAGCCGTTCTTCCACAACAAACA
GATAAAGATTTCATGGAAAGAGTCACACGAAAACAGACTTTTAATAgtga
tcaaaataaaacaaacgaaACAAACTCTATACCAGATGACGCCAGTGATC
AAAGCGATGTTCCTCCTGCACGACCGCCTCTTCCCGCCGAACACATGTAC
CCGAAGCGCGATAGCTCGTCCGCCCATCGCACGTCGTCGCTTCGTTCCAC
GAGCCAGTTATCTCAAGCGTGCTCGCAGATCAGTGAGGAGGAGATTATCC
CTCAAGAAATCAAGCATGATGAACATCAAGCGCTTTCCGAATCAAGTTAT
GCTTCGTCGTCTGCTCCCTCACAAAATTTCCAGCACAGCTCCACGTGTGA
ACTTTCAAAACGAGTCAGTATGAGCCTCAAGGATCTCATTCGAATACACG
AGAAAGAAATAGCGCGCGTTTCAGGAGCGTTCTCAACGCGTACGCTGGAC
AAGATCGACGAGAAAGCATCTTCGGTAAAATCACGTGACGAGGCACATGT
TGATCATTCCAAATGGAAACGTCACACCACCATCGGTCTGCTCGGTGATT
TCACTTCCTATCCCTCAGAGCGATCCGCAAGCGGACCGTTAAGCCCGCGT
TCGGACGGCTCTTTACTTTCACCAGATGCGCGCTCTTCGTCACGTCATTC
TGCGCGCAAATTCAACATCACGATTTCGTCACGTGCTGCATCTTCAGACG
CAAGTGAACTTGTCACCAGTCCCCTATCACCCAAAGATAACAGTGCCTTC
AAAAGCCCACCGCCCAATATTTTACCCAAACCGAAAAAAGTGACGACCAG
CTCTATGGTGACGTCTCCGTTACAGACCGTGGTCGCACCTCTGAAGGCGC
AAACACATGAAGAGTATAACGTACCCTTTGAGACGTCCTACATTGCTCAC
ACGTCCGATACCAGCGTTCAAACTGAAGGGAACTTCTCCCGTACGGCTTC
ATTCCGAAAAAATGAGAAACGCGTACGTGAACTAACAGAAGAAAAAGAAC
TGATGAAAATTTCCTTCGAGGAGGAACGGAAAGAACTCAATAGGAAATTG
CAAGAACAAAAGAAAGTGGCCAACGCTTATCAAAAGCTTGAAGACAGATA
TCGTAAGAAAGTGTACGAACTTCAGAAAGCCATGAAAATGTGCAGTTGCT
CGGGGAGTCGATATTTCGCCAATGGAATCGATAACTTTCGTCAAGATCAT
TCGTCACCGGTCAACGATCATCCTAACGACATCTCCGTTCAAAAGGTGGA
TGGAATTCTCCACCAATTGGAAGCTTGGTTGAACCATCACACAAATGGTA
TCACCTACCCTGACTCTGACATCTCTTCCCTTTTCGGTTCAAACGCAGCG
GACGAAGTTTATGTACGGAACAGTAAGCGAGCGAGCGATCATTACAACGG
TAACGGGTCAATTCCGCTGGATAGGATTATTGACCGCATTGATGCGACCT
CTGTTTGATAGATTGCAATTTGCTCAATATCGAAGTGGGACATTTACATG
GAAACATTTGCATCGGGATCGAGGGCGTATGACACTAACGAGGGCATATT
TGTTTGTCATCGCTAGAAATCTCGGACGAGCTTCGCTATCATTTAAATTT
TTCCCTTCCATGTTGAATTCTTTGAGTTTGTCTCTGATAAGTCCCGAGAA
AGCAcacaaatcaatcaaaaaagttAGAATGCGACAATTTGCTCAACCCT
ATAGAGGGTGCATTGTTATGTTGCGATAAGTTGTTTTAGTGCCCAAATAG
AAACATTTACTTTTGCGTTACTTGATGTAGTGAGCCTGTTggagtatatt
tttgtaaatatatgcAAATATCTTTAGGtctattttttttggaaatgatc
AGATAATTTATGCGGAATGCAATGACGTAATTTTCCctgagttttctttt
tttttgccaaatcgtaagaataccctaagaataccctctagggtgaattt
cacagaatttgataaacATACAGCTTCCTTCGTTAG Run BLAST on NCBI transcript from alignment at scaffold_17:174875..179582- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050397 ID=TCONS_00050397|Name=TCONS_00050397|organism=Clytia hemisphaerica|type=transcript|length=4708bp|location=Sequence derived from alignment at scaffold_17:174875..179582- (Clytia hemisphaerica)
AAAAAATTATAAACATGAAAATAGTCACTTGTTATGCTATAGCAAGGTTG
TTTAAACGAATCATGAAAAGTTTTATCGATTATGTTGGTTGTGAGTTTTA
GATTAAAACCATGTATTTCATTTTACAAGTTGTTTTAAAGTGAGTATTTT
TCCCTGACCTTTCTTCATTTCATGCTGTAGTATCTAGTATAAAATATATC
ATACACGAACTAAGGAATTTCAACTGTTAAGTAAATACCTTGTTTCACTA
AATATTCGATTTTCATTTTTAACCTTCTGATTTTTTTCTTCTTTCAGCCA
AGATTCGTATTACTTCCCATCCTCTCACCTTCGACACACCATTTGGTTGG
ACAGAAAGAATCAAGACCGCATTGAAAACTGGTTAACGGAACAACACGAA
TATACCGGATACCCGCCACCTGAAACTGAATCTGTTATCTCCTTGAGGTC
AAGCAGTGCGGTCGATCTGTTAACAGGCGAACGCTCTTTGATTGACGAAG
TGAAATATAAATCAGAGGAAAGGATACAACAAACACATTTTTTGGAAGTC
GATGATCCCAAACAAAACGGATTGTTTAAACGCTATAATTCGCCTGATTG
TATTCGTCGAAGATATTTTAGCCCGAGATCTGACCCCGCTTTGAATACGG
TCGGTAAGCAGTCTAGTTTGCTTCCAACGAGGAGTGCATCGTACAAACAA
TTGTGGCATTCTAACGGTGAATACTCTTCCACTGATCATCGATTGAATCC
AACTTTTTATCAGGCGGGTAAAGGAAATACGTTTCCGAGACGAGGTGGAA
AATTTGCCGGTCAACGAGAATTCTTGCAAACTCAATCCACCGAGAATATG
GGACAGCAAATGGATAAATACCAACAGAAAGTCTTATTGAACCCTTACGC
TTCTGTTACTTCTACTCAACATGATTCAGACAAAGAAAACAGAATTCTGA
ACAGACAGGTCAACAAGCAAGTAGAAGAATCTTTCTTAGTTGGTCGTACT
TTCGTTTTGAACGGTATAAGTTTGCACAACAAGCCAGATGTTTCTGATCA
CACATCTACACCTGGTCGAAACAGTAGTGTGGCTGCAACGCAAAATACTC
TTTATAATTCTACTGAAATCATCGACACAAGCACTTCAAATAAAACAGAT
AACGAGAAAGTTTCAATGAACAATTCTTTAATCAAAGAGGTCGAAGAGAG
AGTGCCTTCACCTATTTCCCACACCGAACCTCGGTCCACCTCCACTTATC
ACCAGCGTGTTGTGTCAGCACCTGCAACCACTGATAGCACTCATCTACAG
CGTGATCCTTACTGGCGTGGAGAAACGGCCCAACGAAAAATCTCACACGA
AGTCCGTAAAGTGAAAGCGTTTTCTTGGCCTAAACGAGCCGTTCTTCCAC
AACAAACAGATAAAGATTTCATGGAAAGAGTCACACGAAAACAGACTTTT
AATAGTGATCAAAATAAAACAAACGAAACAAACTCTATACCAGATGACGC
CAGTGATCAAAGCGATGTTCCTCCTGCACGACCGCCTCTTCCCGCCGAAC
ACATGTACCCGAAGCGCGATAGCTCGTCCGCCCATCGCACGTCGTCGCTT
CGTTCCACGAGCCAGTTATCTCAAGCGTGCTCGCAGATCAGTGAGGAGGA
GATTATCCCTCAAGAAATCAAGCATGATGAACATCAAGCGCTTTCCGAAT
CAAGTTATGCTTCGTCGTCTGCTCCCTCACAAAATTTCCAGCACAGCTCC
ACGTGTGAACTTTCAAAACGAGTCAGTATGAGCCTCAAGGATCTCATTCG
AATACACGAGAAAGAAATAGCGCGCGTTTCAGGAGCGTTCTCAACGCGTA
CGCTGGACAAGATCGACGAGAAAGCATCTTCGGTAAAATCACGTGACGAG
GCACATGTTGATCATTCCAAATGGAAACGTCACACCACCATCGGTCTGCT
CGGTGATTTCACTTCCTATCCCTCAGAGCGATCCGCAAGCGGACCGTTAA
GCCCGCGTTCGGACGGCTCTTTACTTTCACCAGATGCGCGCTCTTCGTCA
CGTCATTCTGCGCGCAAATTCAACATCACGATTTCGTCACGTGCTGCATC
TTCAGACGCAAGTGAACTTGTCACCAGTCCCCTATCACCCAAAGATAACA
GTGCCTTCAAAAGCCCACCGCCCAATATTTTACCCAAACCGAAAAAAGTG
ACGACCAGCTCTATGGTGACGTCTCCGTTACAGACCGTGGTCGCACCTCT
GAAGGCGCAAACACATGAAGAGTATAACGTACCCTTTGAGACGTCCTACA
TTGCTCACACGTCCGATACCAGCGTTCAAACTGAAGGGAACTTCTCCCGT
ACGGCTTCATTCCGAAAAAATGAGAAACGCGTACGTGAACTAACAGAAGA
AAAAGAACTGATGAAAATTTCCTTCGAGGAGGAACGGAAAGAACTCAATA
GGAAATTGCAAGAACAAAAGAAAGTGGCCAACGCTTATCAAAAGCTTGAA
GACAGATATCGTAAGAAAGTGTACGAACTTCAGAAAGCCATGAAAATGTG
CAGTTGCTCGGGGAGTCGATATTTCGCCAATGGAATCGATAACTTTCGGT
AAGATCCTAGTTCTATCATGAAGGTAATAAAGATTGATGGAGAGTCAATG
CCTTTTGTTCTATTCTGATTTATCATCGGAAGCAAACAGCTGTTTGGTTG
CTTTGGGAATAAGATGATTAAGTTTTGGTATACTCGTGGGAATATTTAAG
ATGAATGAAAAGACATTTCATTTTTAACAAGTATATTGAAATATAATAGC
CTTGTCATGAAAAATTGAAAAAAAACTTCACATAATAAGCACAATACTCT
AGACTTCTAGGGGAAGCTGCCCATAAAGCCATCGATAGATTTAAAAAAGA
ATTACGTGTTACGATTAGGAACCTTGTATCGATCATTTTGTCAGAGTATG
AAAACCGCTGCCCACTTAGACGTGAAGATTTTAAGATAAGAAACTTTCAA
TAATAATAATAATGTGATGCGACTCTTAATGTTCACAAAATGCCAGCCCA
TCCTTATAAAATTAATATATTCTTTCATCCATAAATCAGTTGAAACTATT
TCGAATCGCATTTTGACTAAGATTTCTCGCAAAATTAAGTATTTCAAAAT
CAACGGACCAGCCTCTTTCTGTTCTTATAAAGTTATAAATTGATGTTTTT
TGCTTCCAATGATGGTGCATCAAAGAAAAGCCGCTTTGAATAGATTTATA
ATAGATTTCATCTATCATTTAGGTCATTACCGAGACGTTTTCTCTCCGTC
TGTATCTTTATTACCTTCATGGTTCTATATAGATAAACTTTTTCATTTCT
GCCCGATAAATTTTGCTTTACTTTAAGTAAAGATTAACTTTGGCGTGGAT
TTAATTTGACGAGTGGTCAAGATGCGATTTTTGGGCGGGTATTCGGAAAC
AATGCATAAAACTACTCGTAAGTCTCGTAAGCTCAAACACGCACAGGAAC
ACAATTTTGTTCGAGTTAAGGAGTAAAGGTTATAAGGCATTGTTAACTGA
ATGTACCGTACAGCCTGTTCGAGTAAAGGAGACATTTGAGTTAAAGAGAT
TCCACTGCTTACTGCTTAGAGGATGAGATTTTTAATCATATCTTTTCGGT
TAATATAATTTGGCGGGTTTTGTCAAATTTCACCGAATTCAATCCCCGCC
TTAATAAATGCAGTTAAGGGATCTTCATATTGACTGTTTGCACGTTGACT
TGTAAAGCTATTTAGCTTATCGGCTCAAAATTGTGCAGACGGATAAGGTA
CTGTATGAAGAGTTACACAGCCAGGAATCCGTGCGGTTTAGTTTTTGCCA
TTTGAGATGACATTATTGCTATGAAATTAATTTCCTAACATTTTTTTTCT
TTTCCCTTATAGTCAAGATCATTCGTCACCGGTCAACGATCATCCTAACG
ACATCTCCGTTCAAAAGGTGGATGGAATTCTCCACCAATTGGAAGCTTGG
TTGAACCATCACACAAATGGTATCACCTACCCTGACTCTGACATCTCTTC
CCTTTTCGGTTCAAACGCAGCGGACGAAGTTTATGTACGGAACAGTAAGC
GAGCGAGCGATCATTACAACGGTAACGGGTCAATTCCGCTGGATAGGATT
ATTGACCGCATTGATGCGACCTCTGTTTGATAGATTGCAATTTGCTCAAT
ATCGAAGTGGGACATTTACATGGAAACATTTGCATCGGGATCGAGGGCGT
ATGACACTAACGAGGGCATATTTGTTTGTCATCGCTAGAAATCTCGGACG
AGCTTCGCTATCATTTAAATTTTTCCCTTCCATGTTGAATTCTTTGAGTT
TGTCTCTGATAAGTCCCGAGAAAGCACACAAATCAATCAAAAAAGTTAGA
ATGCGACAATTTGCTCAACCCTATAGAGGGTGCATTGTTATGTTGCGATA
AGTTGTTTTAGTGCCCAAATAGAAACATTTACTTTTGCGTTACTTGATGT
AGTGAGCCTGTTGGAGTATATTTTTGTAAATATATGCAAATATCTTTAGG
TCTATTTTTTTTGGAAATGATCAGATAATTTATGCGGAATGCAATGACGT
AATTTTCCCTGAGTTTTCTTTTTTTTTGCCAAATCGTAAGAATACCCTAA
GAATACCCTCTAGGGTGAATTTCACAGAATTTGATAAACATACAGCTTCC
TTCGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050397-exon-scaffold_17-1575043694:179444..179582 | TCONS_00050397-exon-scaffold_17-1575043694:179444..179582 | Clytia hemisphaerica | exon |
| TCONS_00050397-exon-scaffold_17-1575043694:176985..179285 | TCONS_00050397-exon-scaffold_17-1575043694:176985..179285 | Clytia hemisphaerica | exon |
| TCONS_00050397-exon-scaffold_17-1575043694:174875..175670 | TCONS_00050397-exon-scaffold_17-1575043694:174875..175670 | Clytia hemisphaerica | exon |
| TCONS_00050397-exon-scaffold_17-1510915933:179444..179582 | TCONS_00050397-exon-scaffold_17-1510915933:179444..179582 | Clytia hemisphaerica | exon |
| TCONS_00050397-exon-scaffold_17-1510915933:176985..179285 | TCONS_00050397-exon-scaffold_17-1510915933:176985..179285 | Clytia hemisphaerica | exon |
| TCONS_00050397-exon-scaffold_17-1510915933:174875..175670 | TCONS_00050397-exon-scaffold_17-1510915933:174875..175670 | Clytia hemisphaerica | exon |
| TCONS_00050397-exon-scaffold_17-1491911889:179444..179582 | TCONS_00050397-exon-scaffold_17-1491911889:179444..179582 | Clytia hemisphaerica | exon |
| TCONS_00050397-exon-scaffold_17-1491911889:176985..179285 | TCONS_00050397-exon-scaffold_17-1491911889:176985..179285 | Clytia hemisphaerica | exon |
| TCONS_00050397-exon-scaffold_17-1491911889:174875..175670 | TCONS_00050397-exon-scaffold_17-1491911889:174875..175670 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:174875..179582 - |
Blast
The following BLAST results are available for this feature:
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