TCONS_00049813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049813
Unique NameTCONS_00049813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049813 ID=TCONS_00049813|Name=TCONS_00049813|organism=Clytia hemisphaerica|type=transcript|length=1267bp
aataagcaattcccggtgggggtcactagtggccgcctatagcagtgcct
atagaccaagagtaaggcctaaaagactgaatctgtctattgtgtagact
acacTTTTATATGAAAAGATAAATGAGAAATTGatataatatattttata
aagaagtttctctattaaaagtgaaaaaaaacaacaaataagtTTGAAAT
CTGTCATCTATTATTTATGTTTGATAATCactttttccccgataattttA
CTAGAATTGGATAATGCAGATTCTTATCAAAGTGTTTATTATTTTGCATG
TGATATTGGTACCGTCCCCATATGTGTGTATCGTAATTTTCTTCTACTTC
TACATCAAAAATCTGACCAGCAGCTTCTACGAATAAATTTAAGGTGTTCG
ATCGTTGTGGAGCAAAAAAGATGCAATGCCCTCCGGGAGCAAGAAGGAAT
TGAATAGTGGTGACAAGAGCTTTATGGAAATTGACAAAGAACAAACAATC
AGCTGAAATAATAACGTCAAATTGACCATGAAGATGAGCTAAAcagtcat
ttttgtaaattcccTCATCCCATTTCAATAAAACTGAATTGACATTCTTT
GATACTAGAGTATCATGATTTGATTTAAGCATTATATTCAAGTTATCAAT
GCCTTTTTCATTTCCATCACTCAAGACTATTTCTTTTGTCTTTAAGGTTG
CTGCAACTTGAAGTCCAGCTAACGCAGACATTCCACAACCTAATTCAATT
AtatgtttattttcaaataGTTGTTTATGTTTGTAACAATAATATGATAA
GACTTCTTCAGAAGGCCAAATACATACGTTTCCAGTATTATTAAAACCAC
GTAACTCTTCTGCTGTAAATTGTTCACCAACTAATCGAACTAAAATCTCA
GTATCATCAGTTTGGCCATAATTCAATTTGTAAGAACACCATTTTTCAGA
ACTGTTTTCGACCTCAATAGGCTTGACAGAGTACAAATCATAGCCAGAAA
AATTTCGAACAGAATATTCAGATGAAGTCacatcattgtttttattcttt
ttcctTAACGCTTGTGCCAAGAATTTCCAACGCTCTTTTGCTGCATCTGA
TGAAGttgtttttgatttcattttttctctcCCCCAAAGGAAGaaactct
ttttcaaaattcttagccgtttttttctttctatgaGTAATGTTTTACAA
AAACTTAGTCTCTCTAAAGATCAATTTCTTGAGGTTGGTTTGCTCATACC
ATTTATTCTAATTTGCG
Run BLAST on NCBI

transcript from alignment at scaffold_166:529385..530715-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049813 ID=TCONS_00049813|Name=TCONS_00049813|organism=Clytia hemisphaerica|type=transcript|length=1331bp|location=Sequence derived from alignment at scaffold_166:529385..530715- (Clytia hemisphaerica)
AATAAGCAATTCCCGGTGGGGGTCACTAGTGGCCGCCTATAGCAGTGCCT
ATAGACCAAGAGTAAGGCCTAAAAGACTGAATCTGTCTATTGTGTAGACT
ACACTTTTATATGAAAAGATAAATGAGAAATTGATATAATATATTTTATA
AAGAAGTTTCTCTATTAAAAGTGAAAAAAAACAACAAATAAGTTTGAAAT
CTGTCATCTATTATTTATGTTTGATAATCACTTTTTCCCCGATAATTTTA
CTAGAATTGGATAATGCAGATTCTTATCAAAGTGTTTATTATTTTGCATG
TGATATTGGTACCGTCCCCATATGTGTGTATCGTAATTTTCTTCTACTTC
TACATCAAAAATCTGACCAGCAGCTTCTACGAATAAATTTAAGGTGTTCG
ATCGTTGTGGAGCAAAAAAGATGCAATGCCCTCCGGGAGCAAGAAGGAAT
TGAATAGTGGTGACAAGAGCTTTATGGAAATTGACAAAGAACAAACAATC
AGCTGAAATAATAACGTCAAATTGACCATGAAGATGAGCTAAACAGTCAT
TTTTGTAAATTCCCTCATCCCATTTCAATAAAACTGAATTGACATTCTTT
GATACTAGAGTATCATGATTTGATTTAAGCATTATATTCAAGTTATCAAT
GCCTTTTTCATTTCCATCACTCAAGACTATTTCTTTTGTCTTTAAGGTTG
CTGCAACTTGAAGTCCAGCTAACGCAGACATTCCACAACCCAATTCAATT
ATATGTTTATTTTCAAATAGTTGTTTATGTTTGTNACGCAGACATTCCAC
AACCTAATTCAATTATATGTTTATTTTCAAATAGTTGTTTATGTTTGTAA
CAATAATATGATAAGACTTCTTCAGAAGGCCAAATACATACGTTTCCAGT
ATTATTAAAACCACGTAACTCTTCTGCTGTAAATTGTTCACCAACTAATC
GAACTAAAATCTCAGTATCATCAGTTTGGCCATAATTCAATTTGTAAGAA
CACCATTTTTCAGAACTGTTTTCGACCTCAATAGGCTTGACAGAGTACAA
ATCATAGCCAGAAAAATTTCGAACAGAATATTCAGATGAAGTCACATCAT
TGTTTTTATTCTTTTTCCTTAACGCTTGTGCCAAGAATTTCCAACGCTCT
TTTGCTGCATCTGATGAAGTTGTTTTTGATTTCATTTTTTCTCTCCCCCA
AAGGAAGAAACTCTTTTTCAAAATTCTTAGCCGTTTTTTTCTTTCTATGA
GTAATGTTTTACAAAAACTTAGTCTCTCTAAAGATCAATTTCTTGAGGTT
GGTTTGCTCATACCATTTATTCTAATTTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031576XLOC_031576Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049813-exon-scaffold_166-1575043694:529987..530715TCONS_00049813-exon-scaffold_166-1575043694:529987..530715Clytia hemisphaericaexon
TCONS_00049813-exon-scaffold_166-1575043694:529385..529922TCONS_00049813-exon-scaffold_166-1575043694:529385..529922Clytia hemisphaericaexon
TCONS_00049813-exon-scaffold_166-1510915933:529987..530715TCONS_00049813-exon-scaffold_166-1510915933:529987..530715Clytia hemisphaericaexon
TCONS_00049813-exon-scaffold_166-1510915933:529385..529922TCONS_00049813-exon-scaffold_166-1510915933:529385..529922Clytia hemisphaericaexon
TCONS_00049813-exon-scaffold_166-1491911889:529987..530715TCONS_00049813-exon-scaffold_166-1491911889:529987..530715Clytia hemisphaericaexon
TCONS_00049813-exon-scaffold_166-1491911889:529385..529922TCONS_00049813-exon-scaffold_166-1491911889:529385..529922Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:529385..530715 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.6832	20.7756	6.82443	5.01568	12.9858	9.10906	9.47651	12.2367	5.97054	4.64639	7.35453	4.00895	5.0215	3.72163	8.03366	7.71965	10.088	10.5578	6.49237	5.32418	10.3047	9.45282	22.082	21.0677	1.43431e-05	4.315	7.13037	6.37124	12.7069	13.833
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019410Methyltransf_16
IPR029063SAM-dependent_MTases
Blast
[Close]
BLAST of TCONS_00049813 vs. Swiss-Prot (Human)
Match: CMKMT (Calmodulin-lysine N-methyltransferase OS=Homo sapiens GN=CAMKMT PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 8.441e-56
Identity = 114/303 (37.62%), Postives = 171/303 (56.44%), Query Frame = -3 
Query:  240 KSKTTSSDAAKERWKFLAQALRKKNKNNDVTSSEYSVRNFSGYDLYSVKPIEVENSSE---KWCSYKLNYGQTDDTEILVRLVGEQFTAEE-LRGFNNTGNVCIWPSEEVLSYYCYKHKQLFENKHIIELGCGMSALAGLQVAATLKTKEIVLSDGNEKGIDNLNIMLKSNHDTLV--SKNVNSVLLKWDEGIYKNDCLAHLHGQFDVIISADCLFFVNFHKALVTTIQFLLAPGGHCIFFAPQRSNTLNLF---VEAAGQIFDVEVEENYDTHIWGRY-QYHMQNNKHFDKNLHYPILVKLS 1118
            +    S+     RWK L Q L++K+ ++ +     SVR F  ++L+SV   +   + E    W  Y   +    +  I +R        E+ L  F+NTGNVCIWPSEEVL+YYC KH  +F    + ELG GM+ LAGL VA +   KE++L+DGNEK I N+  ++  N    V  ++ ++S +L+WD    + D ++ L G FD+++ ADCLF   +  +LV  I+ LL P G  + FAP+R NTLN F    E AG  F ++  ENYD HI   + +   +N   +++NLHYP+L+ L+
Sbjct:   28 RGPVVSAPLGAARWKLLRQVLKQKHLDDCL--RHVSVRRFESFNLFSVTEGKERETEEEVGAWVQYTSIF--CPEYSISLRHNSGSLNVEDVLTSFDNTGNVCIWPSEEVLAYYCLKHNNIFRALAVCELGGGMTCLAGLMVAISADVKEVLLTDGNEKAIRNVQDIITRNQKAGVFKTQKISSCVLRWDN---ETD-VSQLEGHFDIVMCADCLFLDQYRASLVDAIKRLLQPRGKAMVFAPRRGNTLNQFCNLAEKAG--FCIQRHENYDEHISNFHSKLKKENPDIYEENLHYPLLLILT 320
The following BLAST results are available for this feature:
BLAST of TCONS_00049813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CMKMT8.441e-5637.62Calmodulin-lysine N-methyltransferase OS=Homo sapi... [more]
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