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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049350 ID=TCONS_00049350|Name=TCONS_00049350|organism=Clytia hemisphaerica|type=transcript|length=1183bp
GTCAAATTCTTTCAATGCATTTGGCTGAAATACAGATTCTTGAAAAGAAT
TTAGCCTGAAAAAACTACTATTTTATTAAGGGGTTATGCTGTTAATAATA
TTACTTATTCAATGGGAGCTCAATTTAGCGTCCCAAAATCTTAATTGTAA
TTATGACTCATCTCCAGATCTTTTTAAAAAGTAGCATGAATGACATTAAA
AACAAAGTACAAGTAGAtaaatccaaaaagaaaaaacagagCCTGAGTAT
AGaaaatattgtatcaaatttaaaacaaacCATACATCAAGCTTACATAC
CTAGCAGCGATAATGAAAATGGTTTAATTGGAGAAAGTTCAGATATCAAG
GAAGAAAACTGTAAAGTGTGTggtaaatcatttttgaaaggAGATACAAC
AAGAGAAGATGACAGAAGCTACGAGAGTTTTTGCTGTAATGAATGTACTG
ATTTAACTGAAGAAATAACCGTAATTCAACAAGAAGCTCCTAGAATACAT
TCATTTGCTCCAGAAATACCTTTTATCCCTTCAGAAATCCCTCTAATAAC
TCCAGATATTCCTCTTGTTTGCAATAACCAATTGGATTCTGGTATTAATG
AGAGTGTTAAAACGTTGAGCATTGAAATTTGTCGGAAATGTGGAGACCCG
TTTACAttgaaacaaagttttgaaagtcGTATTGGTGTTGGAGCATTTTT
AGTTAGTGAATGCGGAAACTGCTTTGCTAAAAAAAGACAGCTTCAAGAAT
CCTATGAGCTTCCTAGACCCTTCGTTTGTGACGTATGCAGTAAATCTTTT
GCAAGAAAATCTGATTTTGAAAGGCACCAAGACATACACACTGGAATCAA
GAAGTTTCATTGCGATGATTGTGGTAAATCTTTTCATCGAAATAGTAATT
TGAAGAGACATAAACAAACTCATCTTGTAACTAAAGAATATAAATGTAGT
GTGTGTAAAGGAAATTTTACGCGTAAAAAGTATCTTGAAAACCATGAAAG
AGAAAAACATAAATTTCttactttgtaatttttaaattaTAATCAGTTAG
TCATAATAAGGAAATCCAGCAAACAACCAAGTCCGCGGTCAATTAAATAT
GATCAATTGCATACCTCAAAGCCTGTGATTTAAAATTATCAAGACAGGGC
TTACAAATGTTTATCATACATAGAGCAGCATTA Run BLAST on NCBI protein sequence of TCONS_00049350-protein >TCONS_00049350-protein ID=TCONS_00049350-protein|Name=TCONS_00049350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MTHLQIFLKSSMNDIKNKVQVDKSKKKKQSLSIENIVSNLKQTIHQAYIP
SSDNENGLIGESSDIKEENCKVCGKSFLKGDTTREDDRSYESFCCNECTD
LTEEITVIQQEAPRIHSFAPEIPFIPSEIPLITPDIPLVCNNQLDSGINE
SVKTLSIEICRKCGDPFTLKQSFESRIGVGAFLVSECGNCFAKKRQLQES
YELPRPFVCDVCSKSFARKSDFERHQDIHTGIKKFHCDDCGKSFHRNSNL
KRHKQTHLVTKEYKCSVCKGNFTRKKYLENHEREKHKFLTL Run BLAST on NCBI transcript from alignment at scaffold_154:833940..835122 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049350 ID=TCONS_00049350|Name=TCONS_00049350|organism=Clytia hemisphaerica|type=transcript|length=1183bp|location=Sequence derived from alignment at scaffold_154:833940..835122 (Clytia hemisphaerica)
TAATGCTGCTCTATGTATGATAAACATTTGTAAGCCCTGTCTTGATAATT
TTAAATCACAGGCTTTGAGGTATGCAATTGATCATATTTAATTGACCGCG
GACTTGGTTGTTTGCTGGATTTCCTTATTATGACTAACTGATTAtaattt
aaaaattacaaagtaaGAAATTTATGTTTTTCTCTTTCATGGTTTTCAAG
ATACTTTTTACGCGTAAAATTTCCTTTACACACACTACATTTATATTCTT
TAGTTACAAGATGAGTTTGTTTATGTCTCTTCAAATTACTATTTCGATGA
AAAGATTTACCACAATCATCGCAATGAAACTTCTTGATTCCAGTGTGTAT
GTCTTGGTGCCTTTCAAAATCAGATTTTCTTGCAAAAGATTTACTGCATA
CGTCACAAACGAAGGGTCTAGGAAGCTCATAGGATTCTTGAAGCTGTCTT
TTTTTAGCAAAGCAGTTTCCGCATTCACTAACTAAAAATGCTCCAACACC
AATACgactttcaaaactttgtttcaaTGTAAACGGGTCTCCACATTTCC
GACAAATTTCAATGCTCAACGTTTTAACACTCTCATTAATACCAGAATCC
AATTGGTTATTGCAAACAAGAGGAATATCTGGAGTTATTAGAGGGATTTC
TGAAGGGATAAAAGGTATTTCTGGAGCAAATGAATGTATTCTAGGAGCTT
CTTGTTGAATTACGGTTATTTCTTCAGTTAAATCAGTACATTCATTACAG
CAAAAACTCTCGTAGCTTCTGTCATCTTCTCTTGTTGTATCTcctttcaa
aaatgatttaccACACACTTTACAGTTTTCTTCCTTGATATCTGAACTTT
CTCCAATTAAACCATTTTCATTATCGCTGCTAGGTATGTAAGCTTGATGT
ATGgtttgttttaaatttgatacaatattttCTATACTCAGGctctgttt
tttctttttggatttaTCTACTTGTACTTTGTTTTTAATGTCATTCATGC
TACTTTTTAAAAAGATCTGGAGATGAGTCATAATTACAATTAAGATTTTG
GGACGCTAAATTGAGCTCCCATTGAATAAGTAATATTATTAACAGCATAA
CCCCTTAATAAAATAGTAGTTTTTTCAGGCTAAATTCTTTTCAAGAATCT
GTATTTCAGCCAAATGCATTGAAAGAATTTGAC Coding sequence (CDS) from alignment at scaffold_154:833940..835122 >TCONS_00049350 ID=TCONS_00049350|Name=TCONS_00049350|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_154:833940..835122 (Clytia hemisphaerica)
ttacaaagtaaGAAATTTATGTTTTTCTCTTTCATGGTTTTCAAGATACT
TTTTACGCGTAAAATTTCCTTTACACACACTACATTTATATTCTTTAGTT
ACAAGATGAGTTTGTTTATGTCTCTTCAAATTACTATTTCGATGAAAAGA
TTTACCACAATCATCGCAATGAAACTTCTTGATTCCAGTGTGTATGTCTT
GGTGCCTTTCAAAATCAGATTTTCTTGCAAAAGATTTACTGCATACGTCA
CAAACGAAGGGTCTAGGAAGCTCATAGGATTCTTGAAGCTGTCTTTTTTT
AGCAAAGCAGTTTCCGCATTCACTAACTAAAAATGCTCCAACACCAATAC
gactttcaaaactttgtttcaaTGTAAACGGGTCTCCACATTTCCGACAA
ATTTCAATGCTCAACGTTTTAACACTCTCATTAATACCAGAATCCAATTG
GTTATTGCAAACAAGAGGAATATCTGGAGTTATTAGAGGGATTTCTGAAG
GGATAAAAGGTATTTCTGGAGCAAATGAATGTATTCTAGGAGCTTCTTGT
TGAATTACGGTTATTTCTTCAGTTAAATCAGTACATTCATTACAGCAAAA
ACTCTCGTAGCTTCTGTCATCTTCTCTTGTTGTATCTcctttcaaaaatg
atttaccACACACTTTACAGTTTTCTTCCTTGATATCTGAACTTTCTCCA
ATTAAACCATTTTCATTATCGCTGCTAGGTATGTAAGCTTGATGTATGgt
ttgttttaaatttgatacaatattttCTATACTCAGGctctgttttttct
ttttggatttaTCTACTTGTACTTTGTTTTTAATGTCATTCATGCTACTT
TTTAAAAAGATCTGGAGATGAGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049350-exon-scaffold_154-1491911889:833940..835122 | TCONS_00049350-exon-scaffold_154-1491911889:833940..835122 | Clytia hemisphaerica | exon |
| TCONS_00049350-exon-scaffold_154-1510915933:833940..835122 | TCONS_00049350-exon-scaffold_154-1510915933:833940..835122 | Clytia hemisphaerica | exon |
| TCONS_00049350-exon-scaffold_154-1575043694:833940..835122 | TCONS_00049350-exon-scaffold_154-1575043694:833940..835122 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:833940..835122 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00049350 vs. Swiss-Prot (Human)
Match: ZN549 (Zinc finger protein 549 OS=Homo sapiens GN=ZNF549 PE=1 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 1.921e-23 Identity = 77/246 (31.30%), Postives = 112/246 (45.53%), Query Frame = 3
Query: 360 CKVCGKSFLK-----GDTTREDDRSYESFCCNEC-TDLTEEITVIQQ------EAPRI-----HSFAPEIPFIPSEIPLITPDIPLVCNNQLDSGINESVKTLSIEI--------CRKCGDPFTLKQSF--ESRIGVG--AFLVSECGNCFAKKRQLQESYEL---PRPFVCDVCSKSFARKSDFERHQDIHTGIKKFHCDDCGKSFHRNSNLKRHKQTHLVTKEYKCSVCKGNFTRKKYLENHER 1001
C +CGKSFL G R R S+ C EC L+ + ++++ E P + SF + F+ + + T + P VC S I+ + + C +CG F KQS RI G + ECG F K++L E + +P+VC +C KSF R SD+ RHQ IHTG + + C DCGK+F L +H + H + Y+CS C F + L H+R
Sbjct: 277 CNICGKSFLHKQTLVGHQQRIHTRE-RSYVCIECGKSLSSKYSLVEHQRTHNGEKPYVCNVCGKSFRHKQTFVGHQQRIHTGERPYVCMECGKSFIHSYDRIRHQRVHTGEGAYQCSECGKSFIYKQSLLDHHRIHTGERPYECKECGKAFIHKKRLLEHQRIHTGEKPYVCIICGKSFIRSSDYMRHQRIHTGERAYECSDCGKAFISKQTLLKHHKIHTRERPYECSECGKGFYLEVKLLQHQR 521
The following BLAST results are available for this feature:
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