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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049259 ID=TCONS_00049259|Name=TCONS_00049259|organism=Clytia hemisphaerica|type=transcript|length=2851bpRun BLAST on NCBI protein sequence of TCONS_00049259-protein >TCONS_00049259-protein ID=TCONS_00049259-protein|Name=TCONS_00049259-protein|organism=Clytia hemisphaerica|type=polypeptide|length=634bp MKILVIIFVFQAILNLGHSTSAKLELKISHELTDTEMSVNDSLRYTIQLQRun BLAST on NCBI transcript from alignment at scaffold_154:217477..237716- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049259 ID=TCONS_00049259|Name=TCONS_00049259|organism=Clytia hemisphaerica|type=transcript|length=20240bp|location=Sequence derived from alignment at scaffold_154:217477..237716- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_154:217477..237716- >TCONS_00049259 ID=TCONS_00049259|Name=TCONS_00049259|organism=Clytia hemisphaerica|type=CDS|length=30480bp|location=Sequence derived from alignment at scaffold_154:217477..237716- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00049259 vs. Swiss-Prot (Human)
Match: NRP2 (Neuropilin-2 OS=Homo sapiens GN=NRP2 PE=1 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 1.604e-32 Identity = 102/340 (30.00%), Postives = 170/340 (50.00%), Query Frame = 1
Query: 1090 VVYNVPFTVAGCSGPLGMTNGXXXXXXXXXXXXXXXXE--PTRARYSADGDAWCAQKEDQNQYIQIDLAYESRITALSTKGRQSKEM----WVEQYQVEYSLDGDEWYMYTENGFPKMFTGNVDKSQEVKNWMSNPIRANFIRIRPVQWVGGMCLRFELFGCAIKHTRNCIDPLGMEDGRITINSLS----QNFQGSNLNESRLNYEAGEFPHGWQAKETNTAEESHLEIDLGSLSQIKKIAIQGSYPTFGTT---SSFYVKTFHLRFSKNGKDFSKIIDNSVSNFGEKSFIGPQDSSRAAVGALVPIQSNVKIEGRYIRIVPEEFITFKV-MRVELYGC 2067
+V+ P C+ PLGM +G I + Q+S++S+Y P ++R D + W + +Y+Q+DL + + +TA++T+G S+E +V+ Y++E S +G++W +Y K+F N D ++ V N + P+ F+RIRP W G+ LR ELFGC + C + LGM G I + +S Q + S ++ +G FP QA+ E L++DLG+ +K + IQG+ T + +V+ F + +S NGKD+ I D K F G + PI + +Y+R+ PE + + MR+E+ GC
Sbjct: 266 LVHQEPLENFQCNVPLGMESGRIANEQISASSTYSDGRWTPQQSRLHGDDNGWTPNLDSNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNGEDWMVYRHGKNHKVFQANNDATEVVLNKLHAPLLTRFVRIRPQTWHSGIALRLELFGCRVTDA-PCSNMLGMLSGLIADSQISASSTQEYLWSPSAARLVSSRSGWFPRIPQAQPG----EEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLNGKDWEYIQDPRTQQ--PKLFEGNMHYDTPDIRRFDPIPA------QYVRVYPERWSPAGIGMRLEVLGC 592 The following BLAST results are available for this feature:
BLAST of TCONS_00049259 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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