TCONS_00048935 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048935
Unique NameTCONS_00048935
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length393

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048935 ID=TCONS_00048935|Name=TCONS_00048935|organism=Clytia hemisphaerica|type=transcript|length=393bp
gttttaaaaaagttgaagaggTGTAAGATGTTGGTTGAAAAGAAGAAGCT
GAAACTGTAGCAAAGAGAAAGAACAGAAGAAAGAAGAtcgaaatttttat
tgtttcatctGGTTTCATTGACAAGACAGGCTCAACAGAGTTGTTGTGTC
ATTTCCAGAAAaggaaagctgaaaaatgaccTGCATACGTggtgaaaaaa
ccttttttgcaaAGCAGCGAATATAACTATAAGAGAGTGAGCAAGAACAT
GAACTTGGCCTTTTTGCATGCTTTGAAATGGAGATGAATATATTCAAGTT
ATGGATAATCTGGAAGAATTTATCCCTCCTCTTATTCAGTGGAAAAGAGA
ACTGATTGTTTGTCGTTGTTCTTGAAATCTTGACTTGGCTGCT
Run BLAST on NCBI

transcript from alignment at scaffold_148:4414..4806

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048935 ID=TCONS_00048935|Name=TCONS_00048935|organism=Clytia hemisphaerica|type=transcript|length=393bp|location=Sequence derived from alignment at scaffold_148:4414..4806 (Clytia hemisphaerica)
AGCAGCCAAGTCAAGATTTCAAGAACAACGACAAACAATCAGTTCTCTTT
TCCACTGAATAAGAGGAGGGATAAATTCTTCCAGATTATCCATAACTTGA
ATATATTCATCTCCATTTCAAAGCATGCAAAAAGGCCAAGTTCATGTTCT
TGCTCACTCTCTTATAGTTATATTCGCTGCTttgcaaaaaaggttttttc
accACGTATGCAggtcatttttcagctttcctTTTCTGGAAATGACACAA
CAACTCTGTTGAGCCTGTCTTGTCAATGAAACCagatgaaacaataaaaa
tttcgaTCTTCTTTCTTCTGTTCTTTCTCTTTGCTACAGTTTCAGCTTCT
TCTTTTCAACCAACATCTTACAcctcttcaacttttttaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031083XLOC_031083Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048935-exon-scaffold_148-1491911889:4414..4806TCONS_00048935-exon-scaffold_148-1491911889:4414..4806Clytia hemisphaericaexon
TCONS_00048935-exon-scaffold_148-1510915933:4414..4806TCONS_00048935-exon-scaffold_148-1510915933:4414..4806Clytia hemisphaericaexon
TCONS_00048935-exon-scaffold_148-1575043694:4414..4806TCONS_00048935-exon-scaffold_148-1575043694:4414..4806Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_148supercontigscaffold_148:4414..4806 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.55487	2.17766	3.44419	3.00113	3.74928	2.33393	1.15777	3.04114	1.2429	0.741169	0.57276	2.63779	1.28124	1.12159	2.16155	3.40837	1.05654	3.0622	1.96967	2.55521	1.80039	1.05473	3.75085	1.32972	8.39704	5.19181	0	2.2785	0.737043	1.16198
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048935 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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