TCONS_00048860 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048860
Unique NameTCONS_00048860
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048860 ID=TCONS_00048860|Name=TCONS_00048860|organism=Clytia hemisphaerica|type=transcript|length=2450bp
CCAggttaaaactgttttttgaaattctgaaaaaatatttcaaaacaatt
tcgaGCCCCCGGAAAAAAACACAAATCTTTAAATGTTGACAACAGTTCGC
TACATTTTCAGGAGGTGAGGTAGGAAAAAACTTCAAGTATATAAAGGCAG
TCGAGAATTGAAGATTTTAATCTTGTTAGTTGAAAGAATTGTGGTAATGT
TTCGGCTATTACTTCTAGTAGCTGTTGTACAGCTCGCCTGTGCCAGAGTT
TTTATTGTTGATAATAAAAAGAAGGTCGCAGGTTTGAGACATGGATCTTT
GACCAAACCATTTGAAACTATTGAAGCTTGtatcaagaaattgaaaaacc
cAGgtGATGAATGCCAGATTCGCGAAGGAAGATATCATGAGGAGATTAAA
ATCGAAAACTTGAAAGGAACGAAAGAGATGCCTTACGTTATTCGAGGTTA
TAAAGACGAACGACCACTTCTTGACGGTACAGTGGTGTTGAAAAATGTGA
CTAAATGGAAACAGAATGGAAATATCTGGAGCGCGAAGATCGATTCTACC
ATTTGGCAATTGTTCTTTGGTAAAACCATGATGACCAATGCAAGATGGCC
GAATGCCAAATGGTCCGACAAAACAATCTTTGATGGAAAACGGTGGCCAA
CACTAGCAGAAGGATCACGATCAGGGCTGATCATCAACAAAGGAAGAAGT
CTTGCCGACACTGGTATCGATATGACCGGAGCTTTAGCCATCTTGAATAT
CGGGAGCTTCGAGACATTTGTggcaaaagttgaaaaccacaGAGCCGGGA
AAAATCAATTCAACTTTAAAGACACCTTCGGTGATTACCATTTTAGCCAC
GATAGAAGCCGGTACTTCTTGGAAGACAAGTTGGAGCTCTTAGATGCTGA
AGAAGAATGGTTCTTTAACAAAACAGATAAAATGTTGTACATGTATCCTC
CACAAGGACAGAAACCATACGATGTTGAATTGAGAGGAAAAGTCCAATCT
TACATCTTCACTTTCAGTAATTGTGAATTTATCACACTGAAAAACATGGA
TTTCTTCACTACCGCTGTTAAGGCCGTAACACCGACGCCACGGAGCCGGA
CAAGCGACTTGGTTTTTGAttcattgaaatttgaattcCATACTTATTCT
AAACGTATGTTACAAGATATCAGTTTAATCAATTGGATGGATATTGATGG
TATTTACAGAGTTGGCAGACCAGAAACATGGGGAAAATTCACCTTCTACA
ATAATGTTTTCAGAGGATCTGATGGACTGGCGTTATCATACTGGGGACGA
AATGTCACACTGTCTAATAACCTGTTTGAGTACAACGATTGGTGTGCTGC
CAATATGGTCAAAGGAGGAGGCGGTTTAGCTACAGTAAAATCATTCAGTA
TCTACGATGTGTTTGAACGTAACACATTCAGATACAATGGAGCAAGTGTT
GCCATCAGACCTGGTAAATATCCAACAGTCAGATTAAATGATATCTCCAA
ACAGTGCTGGGGAGTTATCCAAAACGACGGAGCAGGTGTCCAGTTGACCA
GAAAACCACAAAATTATTCAAGACTGGAATACAACTGGGTTCATGATCAA
CCAAAATATGGTCTCCGTTTTGATGGTGAACCACCAAAGATTGGTGAAAA
TGGTACCATGTCCAGAAACGTTGTTTGGAAATGTAATGGTCTGATGGCGA
AAGGTGATTACCATACGGTAACACAAAACACAGTGTTTGACAAGAGGAAT
GATAAAGATGATGACAAACAAGGTGCTGGTTGCATGCTCTGTGTGTTGAA
GTATGTCCGCACAAACCCTGGTGTCATCAATGAGCATACCATCGTTACTG
GCAATATTGCTGATGTTGCCAATGGCGGAAAAATACCTAAAGGTAAAGGG
AAAGTATATCCATTGCAGGGTTTGATCATTGAAGGCAACCGAATGAACAT
GGATGTTAAACGAGAGTTGATGGATCCAGACAACCATGATTTCAGACCAC
GACCTGCATCGAAAACAGCACAAATCAATGCTGGAGCTTATGAATATTCC
AGAGATTCGAAAACCTATTGGATTCCTGGACGACAGGTTGAAAAAGCGTC
ATCCCCTGTTCCAGTTGATGGCTCCCAGACGGTAATCACTGAAAATCGAG
ATGCATTGATGTGGTTGAATGCTTTAGATTGTTATCAACACAATGTCTTC
TTTGGTACCATCAAAGGAACAATGAGACTGATTGATAGCACCGAAAATGA
TGACAATGTGGCGTATCTTCCTTACAGATTGACCAAAGGACGTAGCTACC
GATGGAGAGTGGATGCTGTTTGCAATGGATCAGAAGTTAAAGGAGATACA
TGGacGTAGCTACCGATGGAGAGTAGATGCTGTTTGCAATGGATCAGAAG
TTAAAGGAGATACATGGacatttaaagctatttaaatgcAGATTAGATTA
Run BLAST on NCBI

transcript from alignment at scaffold_147:233582..239844-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048860 ID=TCONS_00048860|Name=TCONS_00048860|organism=Clytia hemisphaerica|type=transcript|length=6263bp|location=Sequence derived from alignment at scaffold_147:233582..239844- (Clytia hemisphaerica)
CCAGGTTAAAACTGTTTTTTGAAATTCTGAAAAAATATTTCAAAACAATT
TCGAGCCCCCGGAAAAAAACACAAATCTTTAAATGTTGACAACAGTTCGC
TACATTTTCAGGAGGTGAGGTAGGAAAAAACTTCAAGTATATAAAGGCAG
TCGAGAATTGAAGATTTTAATCTTGTTAGTTGAAAGAATTGTGGTAATGT
TTCGGCTATTACTTCTAGTAGCTGTTGTACAGCTCGCCTGTGCCAGAGTT
TTTATTGTTGATAATAAAAAGAAGGTCGCAGGTTTGAGACATGGATCTTT
GACCAAACCATTTGAAACTATTGAAGCTTGTATCAAGAAATTGAAAAACC
CAGGTGAGTGGAAATCATATGAGCCTGACTTTTATCTTACACCCCTGTCT
TACAGCTCCATAGCCGGGTCTGTGACCGGGGCCCGGGGGGGGGAGATACT
ACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCCGGGGCCCGGGGGGGGGGGGTACTACCCTTGCCGACCGACGGGGGTG
CTCCGCTGAGGTTCCAAAAATGGACCCTACCTGAGACTCGTTTTTTCAAA
ATTTTGCCAAAATTTGCGAAAAAAGTGACCCTGAATGGGACTGAAATTCC
GAAGTTTTCTCAAATTTTCTCAAATTTTCCCCAAATTTTCCAAAAAAGGC
ACCCTACAAGGGACTGATTTTTCTATTTTGTTGTTTTTGCGACCTTACCT
GGGACTCGTGGAGGTTAAAAAAGGCACCCTGGCCAGTAACCCATTTAACC
CTTCTAGAGGGTGTAACCTTTGATGGAAGACTAAAGGGAAAAATAACTAT
ATATAGCTGAAATCAGGCTTTAAGGTACCTCTGTTCCAAAAATAATTTTC
CAGCACTAAAAGGACAAAAAGTTCATTTTCTTCTTCTTAATTCTCTGATA
TTTTTCAAGTTGACGATAAACCAGTTATCACACTTTTGCTCGTACAATAT
AGGATATATTTTTCTCGAGTTTTCTAAATTATCCTCGCCTTAAGGCCCGG
AAAATATGAATGACGAAAAATCTGAACTCGAAAAATATATCCTATATTGT
ACTTTGTAGTACCGTGTGATAAATATTACTAATTTTGACTTCTCTTTCAT
TTTTTTGTTGAAAAGGTGATGAATGCCAGATTCGCGAAGGAAGATATCAT
GAGGAGATTAAAATCGAAAACTTGAAAGGAACGAAAGAGATGCCTTACGT
TATTCGAGGTTATAAAGACGAACGACCACTTCTTGACGGTACAGTGGTGT
TGAAAAATGTGACTAAATGGAAACAGAATGGAAATATCTGGAGGTAAGGT
GCAGATTGCAAGCACTTAATATCAGGACAAGTTAAAAAAAAATTGCGTCT
CTGAAATCGTGTGTTTACATTTAGAATTTTCCGACAATAATTTGATTTCA
TTCTTTGTAAGGTAGGCAGAAGAGTGTCAATAGAATCTAAGTCAAATAAA
ATGAAAATTTCTGGCCGGCTGATCGGCAAAGGTAAAAAATCGATCTCCAA
TTATTTATAAAACACAATATTGATTTGACAATCATAAGTTAAAAGACCTC
AACGTGTATCTTCTTCCGTTTGAAATTGAAATTACCTGAAGATTCTATTC
CAATAGACTTTCGAGTATTACAAGTTTTTTATAAGAACATCTAAAAGTTT
TGAGACCTTCGGATGTTCTTAGAAATATTTTGAGTTTTTAGCCTATAATT
GTTCTTAACATGTTGTTATGAGTATTTTTTTATCCAATTGGGTGTTTTAG
AGTCCACAAAGACTTAAAAATGTTCTCAACTGTTCTTAAAATCTTTGATA
TCGAAGCCTTCATGTCATTATATAGTTTGTTCTTATAAAAAAACGTGGAT
AATCTTCTTTAGCGCGAAGATCGATTCTACCATTTGGCAATTGTTCTTTG
GTAAAACCATGATGACCAATGCAAGATGGCCGAATGCCAAATGGTCCGAC
AAAACAATCTTTGATGGAAAACGGTGGCCAACACTAGCAGAAGGATCACG
ATCAGGTAGGTACTCTGATCATTTAAGGGTTTTGACCTTCTAAGAGTGCT
CTACACACGCCAGTTTTACTGGCCTATACTAGGATATTGAAAAAAATCAG
TAGAGGAGTAATAGAGTAGTTCTGTAGTATATACTTTTATCGAATTAATC
TTCGCGAGATTTATTTTTGAAGAAAACTCGCGAGATCGCTGACTCTCAAA
ATTTTTAAAGATCAGATTTTATTTTGCTTAGTCGCAATATTAGCCCAACT
TTTAAGGTTGAAACATTCATATGCCGATTTGAATCCACACTAACCGCAAT
GATCCAAAAACACTCCTACAATCTCATCTTAGGGCTGATCATCAACAAAG
GAAGAAGTCTTGCCGACACTGGTATCGATATGACCGGAGCTTTAGCCATC
TTGAATATCGGGAGCTTCGAGACATTTGTGGCAAAAGTTGAAAACCACAG
AGCCGGGAAAAATCAATTCAACTTTAAAGACACCTTCGGTGATTACCATT
TTAGCCACGATAGAAGCCGGTACTTCTTGGAAGACAAGTTGGAGCTCTTA
GATGCTGAAGAAGAATGGTTCTTTAACAAAACAGATAAAATGTTGTACAT
GTATCCTCCACAAGGACAGAAACCATACGATGTTGAATTGAGAGGAAAAG
TCCAATCTTACATCTTCACTTTCAGTAATTGTGAATTTATCACACTGAAA
AACATGGATTTCTTCACTACCGCTGTTAAGGCCGTAACACCGACGCCACG
GAGCCGGACAAGCGACTTGGTTTTTGATTCATTGAAATTTGAATTCCATA
CTTATTCTAAACGTATGTTACAAGATATCAGTTTAATCAATTGGATGGAT
ATTGATGGTATTTACAGAGTTGGCAGACCAGAAACATGGGGAAAATTCAC
CTTCTACAATAATGTTTTCAGAGGATCTGATGGACTGGCGTTATCATACT
GGGGACGAAATGTCACACTGTCTAATAACCTGTTTGAGTACAACGATTGG
TGTGCTGCCAATATGGTCAAAGGAGGAGGCGGTTTAGCTACAGTAAAATC
ATTCAGTATCTACGATGTGTTTGAACGTAACACATTCAGATACAATGGAG
CAAGTGTTGCCATCAGACCTGGTAAATATCCAACAGTCAGATTAAATGAT
ATCTCCAAACAGTGCTGGGGAGTTATCCAAAACGACGGAGCAGGTGTCCA
GTTGACCAGAAAACCACAAAATTATTCAAGACTGGAATACAACTGGGTTC
ATGATCAACCAAAATATGGTCTCCGTTTTGATGGTGAACCACCAAAGATT
GGTGAAAATGGTACCATGTCCAGAAACGTTGTTTGGAAATGTAATGGTCT
GATGGCGAAAGGTGATTACCATACGGTAACACAAAACACAGTGTTTGACA
AGAGGAATGATAAAGATGATGACAAACAAGGTGCTGGTTGCATGCTCTGT
GTGTTGAAGTATGTCCGCACAAACCCTGGTGTCATCAATGAGCATACCAT
CGTTACTGGCAATATTGCTGATGTTGCCAATGGCGGAAAAATACCTAAAG
GTAAAGGGAAAGTATATCCATTGCAGGGTTTGATCATTGAAGGCAACCGA
ATGAACATGGATGTTAAACGAGAGTTGATGGATCCAGACAACCATGATTT
CAGACCACGACCTGCATCGAAAACAGCACAAATCAATGCTGGAGCTTATG
AATATTCCAGAGATTCGAAAACCTATTGGATTCCTGGACGACAGGTTGAA
AAAGCGTCATCCCCTGTTCCAGTTGATGGCTCCCAGACGGTAATCACTGA
AAATCGAGATGCATTGATGTGGTTGAATGCTTTAGATTGTTATCAACACA
ATGTCTTCTTTGGTACCATCAAAGGAACAATGAGACTGATTGATAGCACC
GAAAATGATGACAATGTGGCGTATCTTCCTTACAGATTGACCAAAGGACG
TAGCTACCGATGGAGAGTGGATGCTGTTTGCAATGGATCAGAAGTTAAAG
GAGATACATGGACATTTAAAGCTATTTAAATGCAGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTGGAAATGTAATGGTCTGATGGCGAAAGGTGATTACCATACGGTAACA
CAAAACACAGTGTTTGACAAGAGGAATGATAAAGATGATGACAAACAAGG
TGCTGGTTGCATGCTCTGTGTGTTGAAGTATGTCCGCACAAACCCTGGTG
TCATCAATGAGCATACCATCGTTACTGGCAATATTGCTGATGTTGCCAAT
GGCGGAAAAATACCTAAAGGTAAAGGGAAAGTATATCCATTGCAGGGTTT
GATCATTGAAGGCAACCGAATGAACATGGATGTTAAACGAGAGTTGATGG
ATCCAGACAACCATGATTTCAGACCACGACCTGCATCGAAAACAGCACAA
ATCAATGCTGGAGCTTATGAATATTCCAGAGATTCGAAAACCTATTGGAT
TCCTGGACGACAGGTTGAAAAAGCGTCATCCCCTGTTCCAGTTGATCGCT
CCCAGACGGTAATCACTGAAAATCGAGATGCATTGATGTGGTTGAATGCT
TTAGATTGTTATCAACACAATGTCTTCTTTGGTACCATCAAAGGAACAAT
GAGACTGATTGATAGCACCGAAAATGATGACAATGTGGCGTATCTTCCTT
ACAGATTGACCAAAGGACGTAGCTACCGATGGAGAGTAGATGCTGTTTGC
AATGGATCAGAAGTTAAAGGAGATACATGGACATTTAAAGCTATTTAAAT
GCAGATTAGATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031047XLOC_031047Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048860-exon-scaffold_147-1575043694:239492..239844TCONS_00048860-exon-scaffold_147-1575043694:239492..239844Clytia hemisphaericaexon
TCONS_00048860-exon-scaffold_147-1575043694:237802..237979TCONS_00048860-exon-scaffold_147-1575043694:237802..237979Clytia hemisphaericaexon
TCONS_00048860-exon-scaffold_147-1575043694:237090..237232TCONS_00048860-exon-scaffold_147-1575043694:237090..237232Clytia hemisphaericaexon
TCONS_00048860-exon-scaffold_147-1575043694:235082..236762TCONS_00048860-exon-scaffold_147-1575043694:235082..236762Clytia hemisphaericaexon
TCONS_00048860-exon-scaffold_147-1575043694:233582..233676TCONS_00048860-exon-scaffold_147-1575043694:233582..233676Clytia hemisphaericaexon
TCONS_00048860-exon-scaffold_147-1510915933:239492..239844TCONS_00048860-exon-scaffold_147-1510915933:239492..239844Clytia hemisphaericaexon
TCONS_00048860-exon-scaffold_147-1510915933:237802..237979TCONS_00048860-exon-scaffold_147-1510915933:237802..237979Clytia hemisphaericaexon
TCONS_00048860-exon-scaffold_147-1510915933:237090..237232TCONS_00048860-exon-scaffold_147-1510915933:237090..237232Clytia hemisphaericaexon
TCONS_00048860-exon-scaffold_147-1510915933:235082..236762TCONS_00048860-exon-scaffold_147-1510915933:235082..236762Clytia hemisphaericaexon
TCONS_00048860-exon-scaffold_147-1510915933:233582..233676TCONS_00048860-exon-scaffold_147-1510915933:233582..233676Clytia hemisphaericaexon
TCONS_00048860-exon-scaffold_147-1491911889:239492..239844TCONS_00048860-exon-scaffold_147-1491911889:239492..239844Clytia hemisphaericaexon
TCONS_00048860-exon-scaffold_147-1491911889:237802..237979TCONS_00048860-exon-scaffold_147-1491911889:237802..237979Clytia hemisphaericaexon
TCONS_00048860-exon-scaffold_147-1491911889:237090..237232TCONS_00048860-exon-scaffold_147-1491911889:237090..237232Clytia hemisphaericaexon
TCONS_00048860-exon-scaffold_147-1491911889:235082..236762TCONS_00048860-exon-scaffold_147-1491911889:235082..236762Clytia hemisphaericaexon
TCONS_00048860-exon-scaffold_147-1491911889:233582..233676TCONS_00048860-exon-scaffold_147-1491911889:233582..233676Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:233582..239844 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.340573	0	0	0	0	0	0.467131	0.991092	0	0.369186	15.1156	17.6121	3.14772	17.5655	15.8133	20.9	25.3388	16.6491	90.5784	72.9378	17.1611	23.6918	23.8068	30.277	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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