TCONS_00048842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048842
Unique NameTCONS_00048842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length798

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048842 ID=TCONS_00048842|Name=TCONS_00048842|organism=Clytia hemisphaerica|type=transcript|length=798bp
AGGTAGTATCAATGACGAGTAGCGGAATATAATGACATAAAAAGGAGGGA
TACCGTGAAAGTGCAGAATAGTGTACAAGAACCACTGGATAAACCGATAA
TCGAGATCGTTCTCAGGTAGACATGGCCCTCAATTGTCAACTTGACTAAA
ACACGGCAGGAAAATCATTTATTCAACATCGAAGCGCTAAGAATTATGCA
CCCGACTGTATCCACGGAGATTTTATatgcaaatatttttattatacccc
tatatcagtgacccggtcgGCTCCACTTGATGGATAACCCGTTGAAAGAA
ATTACATAGAACCCAAATCAAAGATCTTATTTATGGTCTTACCCCGGCCA
ACAATCgttagtttttttaagaattcttgGAATATtacttgaaattattt
ttttcctacccGACGAAGTTAAAAGTTATCACTTAGTGAGTTTTGGAGAT
CCTATAGTCAGACCCGgtgggtttcaaaacttcactgggtcactgataaa
ggggtgttctattatatatgaaatataaaaaatgtacgTCTATGTGTGTC
AGTAAATGTCCGGGACAGTGTATATCATCCGTTTATGTCAACACGCTGGG
GCTTTACAATAACCACAGAGTATCATCAAATTTTACACTTGCGTTTGATT
TCCAGTTTAGTGAAATCGGAGAGGTCATGTCGCAGCTATTGGTGAATTGC
ACCCAATGGAGAGAAGATAAAAATTCCAATTGGGGAAAGAGAAAGATCCA
TTGAGTAATGCGGAACTTCCAAAAGGAGATAAACTTGAACGATTCGGG
Run BLAST on NCBI

transcript from alignment at scaffold_147:6546..7895-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048842 ID=TCONS_00048842|Name=TCONS_00048842|organism=Clytia hemisphaerica|type=transcript|length=1350bp|location=Sequence derived from alignment at scaffold_147:6546..7895- (Clytia hemisphaerica)
AGGTATTTCGTTCTCGAATGTTTTCACCTGGTTTTATCGTCATCCTTTAT
ACCATTTTAATATGTATCTTTCGTCTAGTAAAATAATTTTGTCATGCACN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTAGATAAAGTAAAGTTACATCTTCTAATTTACAG
GATTTTGACATTAACATTTGCGTTCTAGGTAGTATCAATGACGAGTAGCG
GAATATAATGACATAAAAAGGAGGGATACCGTGAAAGTGCAGAATAGTGT
ACAAGTAAGTACTCTCGGGTACCTAATGGCTGGGGGCGCTAATTAATTTT
CCACTTAGGACAATTTTATAACCCCCCACCCCGCTTATTAAGTTTTGAGA
TAATGTTAACTGTAAATTTCTTTATATGTCTAATAAATACTCGATGGGTT
TGGTTGTGCTTTCTATCTAAAGAGCTAACGTAATGAAGCCCTGAATATAC
CTATTTTTATTCATTCGTTGTCTTTTATAGGAACCACTGGATAAACCGAT
AATCGAGATCGTTCTCAGGTAGACATGGCCCTCAATTGTCAACTTGACTA
AAACACGGCAGGAAAATCATTTATTCAACATCGAAGCGCTAAGAATTATG
CACCCGACTGTATCCACGGAGATTTTATATGCAAATATTTTTATTATACC
CCTATATCAGTGACCCGGTCGGCTCCACTTGATGGATAACCCGTTGAAAG
AAATTACATAGAACCCAAATCAAAGATCTTATTTATGGTCTTACCCCGGC
CAACAATCGTTAGTTTTTTTAAGAATTCTTGGAATATTACTTGAAATTAT
TTTTTTCCTACCCGACGAAGTTAAAAGTTATCACTTAGTGAGTTTTGGAG
ATCCTATAGTCAGACCCGGTGGGTTTCAAAACTTCACTGGGTCACTGATA
AAGGGGTGTTCTATTATATATGAAATATAAAAAATGTACGTCTATGTGTG
TCAGTAAATGTCCGGGACAGTGTATATCATCCGTTTATGTCAACACGCTG
GGGCTTTACAATAACCACAGAGTATCATCAAATTTTACACTTGCGTTTGA
TTTCCAGTTTAGTGAAATCGGAGAGGTCATGTCGCAGCTATTGGTGAATT
GCACCCAATGGAGAGAAGATAAAAATTCCAATTGGGGAAAGAGAAAGATC
CATTGAGTAATGCGGAACTTCCAAAAGGAGATAAACTTGAACGATTCGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031042XLOC_031042Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048842-exon-scaffold_147-1575043694:7894..7895TCONS_00048842-exon-scaffold_147-1575043694:7894..7895Clytia hemisphaericaexon
TCONS_00048842-exon-scaffold_147-1575043694:7492..7567TCONS_00048842-exon-scaffold_147-1575043694:7492..7567Clytia hemisphaericaexon
TCONS_00048842-exon-scaffold_147-1575043694:6546..7265TCONS_00048842-exon-scaffold_147-1575043694:6546..7265Clytia hemisphaericaexon
TCONS_00048842-exon-scaffold_147-1510915933:7894..7895TCONS_00048842-exon-scaffold_147-1510915933:7894..7895Clytia hemisphaericaexon
TCONS_00048842-exon-scaffold_147-1510915933:7492..7567TCONS_00048842-exon-scaffold_147-1510915933:7492..7567Clytia hemisphaericaexon
TCONS_00048842-exon-scaffold_147-1510915933:6546..7265TCONS_00048842-exon-scaffold_147-1510915933:6546..7265Clytia hemisphaericaexon
TCONS_00048842-exon-scaffold_147-1491911889:7894..7895TCONS_00048842-exon-scaffold_147-1491911889:7894..7895Clytia hemisphaericaexon
TCONS_00048842-exon-scaffold_147-1491911889:7492..7567TCONS_00048842-exon-scaffold_147-1491911889:7492..7567Clytia hemisphaericaexon
TCONS_00048842-exon-scaffold_147-1491911889:6546..7265TCONS_00048842-exon-scaffold_147-1491911889:6546..7265Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:6546..7895 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.305355	0.455454	0.468761	0	3.81833	2.8388	3.45939	5.24665	1.3522	1.95304	1.57151	1.38629	1.59119	2.1154	0.429219	0.79973	1.33834	0.915726	0.712836	0.754187	1.08749	1.48368	0.556123	0.960487	1.48981	2.56931	1.34217	2.10695	1.0757	0.905278
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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