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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048171 ID=TCONS_00048171|Name=TCONS_00048171|organism=Clytia hemisphaerica|type=transcript|length=4196bpRun BLAST on NCBI protein sequence of TCONS_00048171-protein >TCONS_00048171-protein ID=TCONS_00048171-protein|Name=TCONS_00048171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1150bp EEPSGRLRLRSQTYLLTEINYFDFRSLHQFAIAQFYNLHRSPFLLQMFASRun BLAST on NCBI transcript from alignment at scaffold_141:341868..359296+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048171 ID=TCONS_00048171|Name=TCONS_00048171|organism=Clytia hemisphaerica|type=transcript|length=17429bp|location=Sequence derived from alignment at scaffold_141:341868..359296+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_141:341868..359296+ >TCONS_00048171 ID=TCONS_00048171|Name=TCONS_00048171|organism=Clytia hemisphaerica|type=CDS|length=69060bp|location=Sequence derived from alignment at scaffold_141:341868..359296+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00048171 vs. Swiss-Prot (Human)
Match: UNC80 (Protein unc-80 homolog OS=Homo sapiens GN=UNC80 PE=1 SV=2) HSP 1 Score: 239.965 bits (611), Expect = 1.461e-63 Identity = 180/640 (28.12%), Postives = 309/640 (48.28%), Query Frame = 3
Query: 72 FRSLHQFAIAQFYNLHRSPFLLQMFASVSPMLMTDDMIDLTPEELYELIPSRCLFALLESLDHEIEDRLDIMSLVDGEKPIRPYDDVLEDNDHN-KIDLSIRLALTIIAYKPESSRALQMMFVLSAIVPYHLKYLESQTD------ANPHESDHKKHEMRQIKSLIKYIATIIEHNEALVIRYRNDSSMNADNLLDNPSSSGILDRMQSAYTAVRNWWRNAGEMIQEGDEPEHIFEDGENPLLVNATNRDEKKQLDDFYQPRTVLLTLASEFTLQCTQRYSQLKSNTRGQNDTKFSDIIDEENAFILIDVAMSLLQLVFYDHNVLKNAGLQRFLLEAMPSITWTESL--EAFTIIIKRMNRIFNKLLLKPAYMSFVDWDGLEVLIKGVNLTVKKDESVADVEDLRSLLHTCTRVMIGDFSTQLDPSAPTSSTADIP----DGLRSPSSPGFNTMVIKLAAKLLYIRNDQFGLESNMMMYLQDPDATKVERFLIHWLLPLCIRMGTGRYDMPTLSTDDVTFVSNVLMNLL---QLKNADGSTHVANQAFSMLTSFTFNFGR--QHQTISPAMSQICFLGLKILLNVFNEAFGKLWKSLRSALIHYIDFNESDYTVWLFISHIVSNRSPVLMHLIPVIRKKL 1937
R +FA QFY LHR PF+LQ+FASV+P+L D + P + + ++CLF LL+SL+ E D LDI+ LV EKP++ D + D I +I+L +T++AY PES R+LQM+ VL A+VP +L+ L+ QT A E +++L+ Y ++ R D ++ SSG+ R Q G + E H+ E+G+ + DE+ ++F +PR LL + +EF C R L+ N G+ +++D ++ L ++A SLL+L YD +++ GL+R+++E +P WT A +I+KR++R+FNK+ P V+W+ LI+GV LT+++ ++ + LRSL++ C +++G P+S +P SP P F+T V++L A + + F L + + + + E L++ L+P + +G+G D P L +V + ++N+L ++ + S + ++ S + G+ + + ++ + SQ +L LK++L F G W L + +W F+ IV R P+ + L P I+ KL
Sbjct: 2250 LRQAIEFACHQFYILHRKPFVLQLFASVAPLLEFPDAANNGPSKG---VSAQCLFDLLQSLEGETTDILDILELVKAEKPLKSLDFCYGNEDLTFSISEAIKLCVTVVAYAPESFRSLQMLMVLEALVPCYLQKLKRQTSQVETVPAAREEIAATAALATSLQALL-YSVEVLTRPMTAPQMSRCDQGHKGTTTANHTMSSGVNTRYQ-----------EQGAKLHFIRENLHLLEEGQG---IPREELDERIAREEFRRPRESLLNICTEFYKHCGPRLKILQ-NLAGEPRVIALELLDVKSHMRLAEIAHSLLKLAPYDTQTMESRGLRRYIMEMLPITDWTAEAVRPALILILKRLDRMFNKIHKMPTLRRQVEWEPASNLIEGVCLTLQRQPIISFLPHLRSLINVCVNLVMGVV-------GPSSVADGLPLLHLSPYLSPPLP-FSTAVVRLVALQIQALKEDFPLSHVISPFT---NQERREGMLLNLLIPFVLTVGSGSKDSPWLEQPEVQLLLQTVINVLLPPRIISTSRSKNFMLESSPAHCSTPGDAGKDLRREGLAESTSQAAYLALKVILVCFERQLGSQWYWLSLQVKEMALRKVGGLALWDFLDFIVRTRIPIFVLLRPFIQCKL 2859 The following BLAST results are available for this feature:
BLAST of TCONS_00048171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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