TCONS_00048123 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048123
Unique NameTCONS_00048123
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length519

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048123 ID=TCONS_00048123|Name=TCONS_00048123|organism=Clytia hemisphaerica|type=transcript|length=519bp
TATTGACTGATGGCATAGCCCTTGGTAATGAAAATATCCAGGGTCAAAAG
TTGTCTTCGACGAAATTTACTGTATCAAAGCGATGATATCCCAATTAAAA
CAAACGGATCAGTTTGACTTGAACACCGTTACAAAACAGCTTGAAAGAAT
TATGatgagaaaattcttttttgtccAGTTTCGCCCTCAAAATTCAGGAA
ATGTTTGCTGCAGAATCGGAAGAAGTGAAAGAAAATACTGTCTAAGGAGG
TTCAACTGGCGAAAGATAATGTTTCCATTCATCCAACTCTTCTTGAAACT
GTCTAGTCACGTCCTATCATCCATCAGCCACGATTGAAAACGAGAAAAAT
CAACATTGAACTGCTGTACAGTATATTCACGCAACTCTACTATAACAATT
TGAGGCCTATTAGAGTCAAAAACTACCTCAATGAAATGCGCATGATGACG
ATGGCTTGAACATAAACAAATCTTCCAATTCTTTAATTGATCACTCCTTC
CTATCCACTTCCTATCAAC
Run BLAST on NCBI

transcript from alignment at scaffold_140:167692..170872-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048123 ID=TCONS_00048123|Name=TCONS_00048123|organism=Clytia hemisphaerica|type=transcript|length=3181bp|location=Sequence derived from alignment at scaffold_140:167692..170872- (Clytia hemisphaerica)
TATTGACTGATGGCATAGCCCTTGGTAATGAAAATATCCAGGTAAGACAA
GCCTAGCTCTATACCATATCTCATCCTTAATTCAATCTCTTGTCAGTCCT
GTGTTTTTTAGCATTCTTTTAATTACATTTTAAATCAATAAAAAAATTTA
AATATATTTAATAATTTAATAATTTATATCTTTTGCATTTTCTTTTTATA
AATCTTAGTTTAGACGGAAAAACAATTTTGTAAAATTGACGACGAATAAA
TGTTAAATAAATAACAAAAATAAAATAAAAAACAACAAATCTCACTGGCA
AATACTTATATCTTTGCTAACTTTGTATCCTTACTATGTCTCTTTTAAAG
TATAATACACTTTTTTTTATAAGAACAATTTTATAAGAACAATGAGGCTA
AAAAATGCCAAAAAATAAGAACTATTTAAGAACAGTGGAGAGGCTGAAAG
TATTTTAAAAGTAGTTTTTTTGTTTAGTTATAGCAAAAAGAATCACTGGT
TTCTAAAATCCTCTAAATAGTAAAGCAAATAGCCAAAACTTGTTTTTTAC
CTTAGAAAAAATAAGAACAAAATAAGAACAATTCAAGGTTCAAAGTGCCA
AAAAAATAAGAACAGCCGAGCCTCAGCAAAAATTTACTGGTTCTTATTAA
AGAAAGTGTAGCTTCTCTCTATTTTTCAGAAGATTACTAAACAGGTCTAG
TGTTTTTGTATCAGTGTACAAAATTATTGAACCATCAGTGGTAGTTTGTA
TTGACCCTAAAGAATATTTTGTTTCTGGTCCAGCTTGAAAATTGTCGTAA
CCCGGCCGAATTTTTTCTCTTTGAACTTTCCATTCTTTTCCAAATTTTCC
ATTTCAACATTTTCTACGCAAACAAGTGATCCAAACAATCTTTCCATATT
TTCCATTCTGTATGATTTTGTTAATGCTTTTGATTTTACTTCTCAGGGTC
AAAAGTTGTCTTCGACGAAATTTACTGTATCAAAGCGATGATATCCCAAT
TAAAACAAACGGATCAGTTTGACTTGAACACCGTTACAAAACAGCTTGAA
AGAATTATGGTACAAGCCTCCCTTATATTTCATAATAACAGAAACAATGT
CTAAATGTATGTTTGATCTCTCATAATTTCAACAATATCATCATATTCAT
CTAAATTGAACTACATAGGGTCACCCAAGTTGACAAACAACGTCGTTTTT
CTTGGCTGCTAAACTTTTCTGAACAATTTAAGGAAAAAATTTTTATATGT
TGGGTAGTGGCGNCGTCATATTCATCTAAATTGAACTACACAGGGTCTTT
TAAGTTGACACACAACGTCGTTTTATTTGGTTGCGAAACTTTTTGAAACA
ATTTAAGGAAAAAAATTATATATGTTGGGTAGTGGCGTTTTTTTAGAAGA
TTTTATTCTCACTTATTGAAAATTGTCAAACAATGAAATTAATTTATTCT
GATTTTATTTTTTTAGATGAGAAAATTCTTTTTTGTCCAGTTTCGCCCTC
AAAATTCAGGAAATGTTTGCTGCAGAATCGGAAGAAGTGAAAGAAAATAC
TGTCTAAGGGTAAGGAATTAATTTTACAAAATTAAAAGGAAAAAGGAAAC
AAATTAATTACAATATTTTGTTCATACACGTCTTTTTTTTTTTAAGAAAC
TAGTTTTACCAAGCAGCCTCAATGTTTCTTAAGAAATCGGCCTTCTTGAG
CCTTAAATGTTTCTTACATGTTTCTAAACTTTTTGACATAATTAGCCTTG
ATTGGAAGGTTCTTATAAAAAAAACGAATTAAAAAATGTTATTTTCTCAT
TCTCAGCCTCAGCATGTTTCTTAGATGTTTCTTAGTTTTTAGGCATTCTG
AGCCTCATGTTTCTTAAAAGTGTGTTTCTTAAAAAAAAAAAAGACGTGTA
CTTCTCTCATGAAATCAATCTAGAAGAATTCTGCATAAAAGGAGACCGGG
TTAAGATTCATCATATTTGAATGCTTTCAAAGGTCTGAAACGTTTAAATT
GACTCTGTAATCTTTCGTCTTCGGACCATTGGACACAATTCTCTGTAAGG
TCGATAGGTGTATGAGCAATTTCATGATCGTAATGAATCTTGCTCATACT
TCGTATTGATTTAACAATTTGAAAGTCTTCAAAAGTGAATTTACTATTAC
AGAGCAACTAGTTTCCATTCCCCCTAATTTATTGATTCATTCAATTCTGT
TTTGATAATCAATTTCGCTCTTACCCATATAGAGGTTCAACTGGCGAAAG
ATAATGTTTCCATTCATCCAACTCTTCTTGAAACTGTCTAGTCACGTCCT
ATCATCCATCAGCCACGATTGAAAACGAGAAAAATCAACATTGAACTGGT
ACCGTTACGTTTCCATGGATGTCTTATTGATGCATGATGTCTCTAGGTCT
TTACTCTGAGTGTCCTGTTTGACATGACTTATAATGATTTAAATGAATAA
TCCATCAGATACATCACCCCGGCTTCGATATTACGGGCTGAACTGATCTG
TTTAAAATCATATCATCAAATGAACTAAAAGCTGCTCCTAAAAAGATTGG
CAGCCTGCACATTTCGATAAAAAGGTGATATCTCTTTGCAATGACGATTT
TGAATGAATGGATTTAAAAGTTTGGAAAAAGAAGATGAAAGAATATAAAG
ATACTTTTACTGGAAAGGAAAAATTATATTCTTCTGAAACTTTAGATTTC
TCTGAATTCAAACTGTGTTTAGATTTTTTACCTTTTTTTGGAACAAAAAT
TAGAACCCTTCAAGTTGGACCCCATTAGTGTAATGTCATAGCTGGAAAAT
AGCTTAATAATCANTTTCTCTGAATTCAAACTGTGTTTAGATTTTTTACC
AATTTTTGTTCCAAACAAAAATTAGAACCCTTCAAATTGGACCCCATTAG
TGTATTGTCATAGCTGGAAAATAGCTTAATAATCGATTTGAATTGTCGTC
TCAAAAGACGCCTGGATGGAACGATCAAATTCGAAAGTTATCGTTTTGTC
AGTAATATCTCTTCTCTTATTTCAGCTGTACAGTATATTCACGCAACTCT
ACTATAACAATTTGAGGCCTATTAGAGTCAAAAACTACCTCAATGAAATG
CGCATGATGACGATGGCTTGAACATAAACAAATCTTCCAATTCTTTAATT
GATCACTCCTTCCTATCCACTTCCTATCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030632XLOC_030632Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048123-exon-scaffold_140-1575043694:170832..170872TCONS_00048123-exon-scaffold_140-1575043694:170832..170872Clytia hemisphaericaexon
TCONS_00048123-exon-scaffold_140-1575043694:169814..169926TCONS_00048123-exon-scaffold_140-1575043694:169814..169926Clytia hemisphaericaexon
TCONS_00048123-exon-scaffold_140-1575043694:169314..169406TCONS_00048123-exon-scaffold_140-1575043694:169314..169406Clytia hemisphaericaexon
TCONS_00048123-exon-scaffold_140-1575043694:168525..168640TCONS_00048123-exon-scaffold_140-1575043694:168525..168640Clytia hemisphaericaexon
TCONS_00048123-exon-scaffold_140-1575043694:167692..167847TCONS_00048123-exon-scaffold_140-1575043694:167692..167847Clytia hemisphaericaexon
TCONS_00048123-exon-scaffold_140-1510915933:170832..170872TCONS_00048123-exon-scaffold_140-1510915933:170832..170872Clytia hemisphaericaexon
TCONS_00048123-exon-scaffold_140-1510915933:169814..169926TCONS_00048123-exon-scaffold_140-1510915933:169814..169926Clytia hemisphaericaexon
TCONS_00048123-exon-scaffold_140-1510915933:169314..169406TCONS_00048123-exon-scaffold_140-1510915933:169314..169406Clytia hemisphaericaexon
TCONS_00048123-exon-scaffold_140-1510915933:168525..168640TCONS_00048123-exon-scaffold_140-1510915933:168525..168640Clytia hemisphaericaexon
TCONS_00048123-exon-scaffold_140-1510915933:167692..167847TCONS_00048123-exon-scaffold_140-1510915933:167692..167847Clytia hemisphaericaexon
TCONS_00048123-exon-scaffold_140-1491911889:170832..170872TCONS_00048123-exon-scaffold_140-1491911889:170832..170872Clytia hemisphaericaexon
TCONS_00048123-exon-scaffold_140-1491911889:169814..169926TCONS_00048123-exon-scaffold_140-1491911889:169814..169926Clytia hemisphaericaexon
TCONS_00048123-exon-scaffold_140-1491911889:169314..169406TCONS_00048123-exon-scaffold_140-1491911889:169314..169406Clytia hemisphaericaexon
TCONS_00048123-exon-scaffold_140-1491911889:168525..168640TCONS_00048123-exon-scaffold_140-1491911889:168525..168640Clytia hemisphaericaexon
TCONS_00048123-exon-scaffold_140-1491911889:167692..167847TCONS_00048123-exon-scaffold_140-1491911889:167692..167847Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_140supercontigscaffold_140:167692..170872 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.2882	1.0892	1.12391	0	0	0	0	0.307559	0	0	0	0	0	0	0	0	0	0.225905	0	0	0	0	0.22209	0.036031	0	0	0	0	0.238679	0.27671
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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