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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048093 ID=TCONS_00048093|Name=TCONS_00048093|organism=Clytia hemisphaerica|type=transcript|length=1662bp
TTTATCATGATCGTTCTTAAGAAAACAAcgtaaagaaaagaaagaaagtt
taTTATGAAGATGAGAGTTTGGATTTTAGTAGCAAccatttatttttcta
ttgttaatGTCTGTACAAAACCATTGGAAAGGAGGTTCCTCAGCCAAAAA
GGTGGTCAAGATTTGAAGAAAGAAGATTGTAGAGAAATCGTCGAAACATT
GGAATCTGAAACTTTAAGTATCGAAGATGATCAACAAAATGACGataact
ttttaaaatcaatcagTGAAGACGAGACTCAGAAGAAGAAGCGAGggagg
aagaaaaagaagaaacgtcGAAAGGAGAACAAGGGTGTCAACAACACAAA
GAATGGCCGCGCGCATCGCACTGTTTCAAGATGTGGTACTAGAGTCCAGT
ATCTCTGCAATTGGCTTTTCATTGATGGACAATTGCGATTGGTTTGCAGT
AATGTAAACGTTGTTCGATGTAGATAAATGCGAACTGATAATTTTCAGGA
GTAGTCTTGAAGGAACCCTATTGGCAAGAGACGATAAATGTATTTCCATG
ACGCGTTTCATTTTACTTggataaatgaaaattaaaaggAGTCTTGGGAT
AACTGGATTACAAAAAAGTTGGCAAAGCCAGCACTCTCACAACACTGACA
CTAAATTGATACATTAACTGTTTACATGATATTGTGCAAGCAGATAATAT
CTCTTTATAATGAATTgcataaaaatattgaatggtGTAGATGCTTTTTC
TAACCATAAGGAAGTTGCTTTGCACATCTAAATGGGAAAAACTGATCGTt
tttaaaaactcaaaatatatgAGGATGATAACTGCCGGAAACAATCAATG
CTTAATATAGTTTAAGTGTCAGCAAGAAATTGAGCTCAAACCTATATATT
TgtgttaaaattgaaaataaaaatcaatttgtcaCGCTGCAATAATGTTC
TTCTTAAATgtgaaattgactttttttgtGTTAAGTTTGGGAGCTTTCCA
ATTCACAATTGAAataaaaactgatggaaaacttgtttttgatgAGCAAA
GCTTGGATGAGGGATATGATGAACGAATAATTAAAGACAGCACTGAAGAA
TCTATTGGCATGAATAAGCTATTAATTTCTGAAAGAGAGATATACGACAT
CGATGCTGATGAGGCAATCCAGTGGAAAGACGAAGAGACAGTTCAACTCG
ATGGTGATAAGGAGAAACGGAAGCAAAAACAAAGACAACAGAGAAGAAGA
ACAACAACAATGAAACCACCCGAAATTTCAAGAGAATTTGGCCGTTTACA
ATGCCAAAATACAGTGGAGAGACGTTGCAGAATATTGTTCATTGAAAGTG
AATTTCGATTGGTTTGTGAAAATATCAATGTTCTTCGATGTAACTGAATG
ATGTTTAGTTTGTAATGAAATATCAAACAGTTTTGACTGAGTTAGTGGCT
AGCCCATGTTGGAATTCTAAAAGGCGAAGCATTTCCGAAGTGCTACTTAT
TTTTATCACTCCTGTCGCAGTGGGCCGGTGAAAGTTTCACCGGGTCTAAT
CTAGAGATCTTTAAAGCTCACTGAAAAAGCCATTACCAAGATTGTCACGG
GggtaaaattcaaaactttcgcTTTCAAGAATTTAACGAACCTACAATCT
CGGACaaaatat Run BLAST on NCBI protein sequence of TCONS_00048093-protein >TCONS_00048093-protein ID=TCONS_00048093-protein|Name=TCONS_00048093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MFFLNVKLTFFVLSLGAFQFTIEIKTDGKLVFDEQSLDEGYDERIIKDST
EESIGMNKLLISEREIYDIDADEAIQWKDEETVQLDGDKEKRKQKQRQQR
RRTTTMKPPEISREFGRLQCQNTVERRCRILFIESEFRLVCENINVLRCN Run BLAST on NCBI transcript from alignment at scaffold_14:579360..581021 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048093 ID=TCONS_00048093|Name=TCONS_00048093|organism=Clytia hemisphaerica|type=transcript|length=1662bp|location=Sequence derived from alignment at scaffold_14:579360..581021 (Clytia hemisphaerica)
atattttGTCCGAGATTGTAGGTTCGTTAAATTCTTGAAAgcgaaagttt
tgaattttaccCCCGTGACAATCTTGGTAATGGCTTTTTCAGTGAGCTTT
AAAGATCTCTAGATTAGACCCGGTGAAACTTTCACCGGCCCACTGCGACA
GGAGTGATAAAAATAAGTAGCACTTCGGAAATGCTTCGCCTTTTAGAATT
CCAACATGGGCTAGCCACTAACTCAGTCAAAACTGTTTGATATTTCATTA
CAAACTAAACATCATTCAGTTACATCGAAGAACATTGATATTTTCACAAA
CCAATCGAAATTCACTTTCAATGAACAATATTCTGCAACGTCTCTCCACT
GTATTTTGGCATTGTAAACGGCCAAATTCTCTTGAAATTTCGGGTGGTTT
CATTGTTGTTGTTCTTCTTCTCTGTTGTCTTTGTTTTTGCTTCCGTTTCT
CCTTATCACCATCGAGTTGAACTGTCTCTTCGTCTTTCCACTGGATTGCC
TCATCAGCATCGATGTCGTATATCTCTCTTTCAGAAATTAATAGCTTATT
CATGCCAATAGATTCTTCAGTGCTGTCTTTAATTATTCGTTCATCATATC
CCTCATCCAAGCTTTGCTcatcaaaaacaagttttccatcagtttttatT
TCAATTGTGAATTGGAAAGCTCCCAAACTTAACacaaaaaaagtcaattt
cacATTTAAGAAGAACATTATTGCAGCGtgacaaattgatttttattttc
aattttaacacAAATATATAGGTTTGAGCTCAATTTCTTGCTGACACTTA
AACTATATTAAGCATTGATTGTTTCCGGCAGTTATCATCCTcatatattt
tgagtttttaaaaACGATCAGTTTTTCCCATTTAGATGTGCAAAGCAACT
TCCTTATGGTTAGAAAAAGCATCTACaccattcaatatttttatgcAATT
CATTATAAAGAGATATTATCTGCTTGCACAATATCATGTAAACAGTTAAT
GTATCAATTTAGTGTCAGTGTTGTGAGAGTGCTGGCTTTGCCAACTTTTT
TGTAATCCAGTTATCCCAAGACTccttttaattttcatttatccAAGTAA
AATGAAACGCGTCATGGAAATACATTTATCGTCTCTTGCCAATAGGGTTC
CTTCAAGACTACTCCTGAAAATTATCAGTTCGCATTTATCTACATCGAAC
AACGTTTACATTACTGCAAACCAATCGCAATTGTCCATCAATGAAAAGCC
AATTGCAGAGATACTGGACTCTAGTACCACATCTTGAAACAGTGCGATGC
GCGCGGCCATTCTTTGTGTTGTTGACACCCTTGTTCTCCTTTCgacgttt
cttctttttcttcctccCTCGCTTCTTCTTCTGAGTCTCGTCTTCActga
ttgattttaaaaagttatCGTCATTTTGTTGATCATCTTCGATACTTAAA
GTTTCAGATTCCAATGTTTCGACGATTTCTCTACAATCTTCTTTCTTCAA
ATCTTGACCACCTTTTTGGCTGAGGAACCTCCTTTCCAATGGTTTTGTAC
AGACattaacaatagaaaaataaatggTTGCTACTAAAATCCAAACTCTC
ATCTTCATAAtaaactttctttcttttctttacgTTGTTTTCTTAAGAAC
GATCATGATAAA Coding sequence (CDS) from alignment at scaffold_14:579360..581021 >TCONS_00048093 ID=TCONS_00048093|Name=TCONS_00048093|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_14:579360..581021 (Clytia hemisphaerica)
TCAGTTACATCGAAGAACATTGATATTTTCACAAACCAATCGAAATTCAC
TTTCAATGAACAATATTCTGCAACGTCTCTCCACTGTATTTTGGCATTGT
AAACGGCCAAATTCTCTTGAAATTTCGGGTGGTTTCATTGTTGTTGTTCT
TCTTCTCTGTTGTCTTTGTTTTTGCTTCCGTTTCTCCTTATCACCATCGA
GTTGAACTGTCTCTTCGTCTTTCCACTGGATTGCCTCATCAGCATCGATG
TCGTATATCTCTCTTTCAGAAATTAATAGCTTATTCATGCCAATAGATTC
TTCAGTGCTGTCTTTAATTATTCGTTCATCATATCCCTCATCCAAGCTTT
GCTcatcaaaaacaagttttccatcagtttttatTTCAATTGTGAATTGG
AAAGCTCCCAAACTTAACacaaaaaaagtcaatttcacATTTAAGAAGAA
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048093-exon-scaffold_14-1491911889:579360..581021 | TCONS_00048093-exon-scaffold_14-1491911889:579360..581021 | Clytia hemisphaerica | exon |
| TCONS_00048093-exon-scaffold_14-1510915933:579360..581021 | TCONS_00048093-exon-scaffold_14-1510915933:579360..581021 | Clytia hemisphaerica | exon |
| TCONS_00048093-exon-scaffold_14-1575043694:579360..581021 | TCONS_00048093-exon-scaffold_14-1575043694:579360..581021 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:579360..581021 . |
Blast
The following BLAST results are available for this feature:
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