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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047372 ID=TCONS_00047372|Name=TCONS_00047372|organism=Clytia hemisphaerica|type=transcript|length=2344bp
CGGCTTGCTCGCAAGACGTCAACCGCCTTTTATTCGAATACATCGGGCGG
AAGCCCTCAATACCGCCAACGAAAATGAGTTATTAAACTTTATTAAGAGT
GTCGCCGTAAAAGGCACCGAACTgttaaataaactgaaatgtcCATACGC
CTACCTCGTAAAAACCAAACATAAAATTGTAGGCATCACTCACGCCCCTC
TCGATATATTGGGTACGCTCTTCCTCCACATCACTTACGGAGCGCGCTCA
TCGAGTCAAATGGTTTACATTTCGAAAAACTGTAAAGGTTTTTACCTATC
TCAAACCGCTATGAAAGATTTGGGAATCGTCAACGAATTCTTCCCAAAAA
GCATCTCCGCCTCCACAGGACAGAGTCACAATCAGACGAATGCCACTGCC
AAGAGAGAACGCCACCGCCAAATCGCCCAGAAGACATCCCCTTCGAGCCA
ATGCAAGAGAACATTCCAAAGCTTAAATCATGGATCCTGGACGCGTTCGG
CTCTTCCGCCTTTAACCAATGCCCTCACCAGGAGCTGCTACCAACAATGA
CAGGAGAACCCATCCGACTCCATCTTAAAGAAGACACAGTCCCTTACGCA
GCTCACACGCCTATCCCGTCTCACACCACTGgaaacaaaaagtcaaagaa
gacATCGACCGCAGCGTCCGTCTCAAGATCATCAAACAAATCCCCCAAGG
AACCACAGCCGAGTGGTGTGCGCGTATGATTGTCACCTCAAAGAAAAACG
GGGACCCCGCCGAACTGTTGATCTACAGAAACTTAACGGCGCTACACTCC
GAGAACCACATCACACACCAAGCCCCTTCAATGTGGCATCTACTTTCCCC
ATAAAAACTTACAGAACTGTAATTGACGCGTTGAATGGATATCATAGCCT
CCCACTTCATGAAACGACCAAGAACAGTATGACTTTCATTACTGAATGGG
GTCGGTATTGGTACTGCTGCGCCCCAATGGGGTACCACGTCTCCGGAGAT
GCGTACACTCGGGGGTTTGATGACATCACCCAAGAGTTCCCGAGATCTGC
TAGGATTGTCGACGACGCACTACTCTGGGACCACAGCATCCAAGAATCCT
TCTGGCACACGATAGACTACCTGATCCTCTGTGCTAAaaacagggctcga
aataacgatatttaggtggtcggacacatagtccgatcaaaaattgattt
gggtcggacatgtcctaaggcttttaaagtaaaatcgNCTCTTATTACTT
TCGTCACTTGTTATACACTACGAGGCTTGGGAACTCTGTTACTCTACCTA
CTGAACCCTGAACTCTACACCGTTATTATatgggaggtaaacaaacgcgt
ttttgcctgcgaggggttagggaaagtgggttttcagtttctaacttttg
atagcgatcttcttttggcaaaagattttcagggtggtataatatcatga
atagatagaacatacgaaaatttgaggggattttgtttgacagaacttaa
gaaaagctcaaaaaaccctTAGGGACCTTAACCcttaattctatttgact
ttgaagcttcatggaagatgaagaagtagaaagataaaaaatgcactggt
taattttttttaactattgtgtgttctatcattgttgaaagttggagAAA
TTTCTACCGACGCAGAAATTTTTTACAGCTAATTAAAGGCACGGTCTGCT
TATACTATATGTTTGCTATATCGTCTaggcaaaaaatggtaaaaaaagac
gcaaacataatttttcataagtgtggttataatttttttgattgcggccg
cgtacaggaactcgccaaatgtttattgattatgaaaaaagctttttaag
tgGGCCCACCCGTGGGGCTATCCCCTCTGCTTTGCTTTTCTGTCTCtgac
agtcagggaaatccttCAATTTAATTGCggtagtaattttttactgcaat
tgcggtataaacgTCACTTTCATGCAGAATATGATGGTTGATATACCTTT
TTAAtattcagttttttaaatttttctgcaGTACCTGGTACCCTGGTTAC
TAAAATTCTAGCCAATCAAAACCAAAATACAACAGTCAAAATTGTTGTAA
GTATAATATCCAAGAAGAGAGGGTGCCTTGAAATCTATAATGAAACCACT
GAAACTGAAATTGTAATGAGCCAACATGGCAATAGTAATGCCATCTTAAC
ATTTCTTCTGGTTTTTCTGAGAATTAATAAATCTGTTTCCATAGATATAc
cctaagggaagaaattttagtgaaaagaaatttttgcggtatTCAATTTC
GCGAacgagccgatttcaaaagtttcacgaaatttaatttcgcg Run BLAST on NCBI protein sequence of TCONS_00047372-protein >TCONS_00047372-protein ID=TCONS_00047372-protein|Name=TCONS_00047372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
GLLARRQPPFIRIHRAEALNTANENELLNFIKSVAVKGTELLNKLKCPYA
YLVKTKHKIVGITHAPLDILGTLFLHITYGARSSSQMVYISKNCKGFYLS
QTAMKDLGIVNEFFPKSISASTGQSHNQTNATAKRERHRQIAQKTSPSSQ
CKRTFQSLNHGSWTRSALPPLTNALTRSCYQQ Run BLAST on NCBI transcript from alignment at scaffold_126:255609..257952 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047372 ID=TCONS_00047372|Name=TCONS_00047372|organism=Clytia hemisphaerica|type=transcript|length=2344bp|location=Sequence derived from alignment at scaffold_126:255609..257952 (Clytia hemisphaerica)
cgcgaaattaaatttcgtgaaacttttgaaatcggctcgtTCGCGAAATT
GAataccgcaaaaatttcttttcactaaaatttcttcccttagggTATAT
CTATGGAAACAGATTTATTAATTCTCAGAAAAACCAGAAGAAATGTTAAG
ATGGCATTACTATTGCCATGTTGGCTCATTACAATTTCAGTTTCAGTGGT
TTCATTATAGATTTCAAGGCACCCTCTCTTCTTGGATATTATACTTACAA
CAATTTTGACTGTTGTATTTTGGTTTTGATTGGCTAGAATTTTAGTAACC
AGGGTACCAGGTACtgcagaaaaatttaaaaaactgaataTTAAAAAGGT
ATATCAACCATCATATTCTGCATGAAAGTGAcgtttataccgcaattgca
gtaaaaaattactaccGCAATTAAATTGaaggatttccctgactgtcaGA
GACAGAAAAGCAAAGCAGAGGGGATAGCCCCACGGGTGGGCCcacttaaa
aagcttttttcataatcaataaacatttggcgagttcctgtacgcggccg
caatcaaaaaaattataaccacacttatgaaaaattatgtttgcgtcttt
ttttaccattttttgcctAGACGATATAGCAAACATATAGTATAAGCAGA
CCGTGCCTTTAATTAGCTGTAAAAAATTTCTGCGTCGGTAGAAATTTctc
caactttcaacaatgatagaacacacaatagttaaaaaaaattaaccagt
gcattttttatctttctacttcttcatcttccatgaagcttcaaagtcaa
atagaattaagGGTTAAGGTCCCTAagggttttttgagcttttcttaagt
tctgtcaaacaaaatcccctcaaattttcgtatgttctatctattcatga
tattataccaccctgaaaatcttttgccaaaagaagatcgctatcaaaag
ttagaaactgaaaacccactttccctaacccctcgcaggcaaaaacgcgt
ttgtttacctcccatATAATAACGGTGTAGAGTTCAGGGTTCAGTAGGTA
GAGTAACAGAGTTCCCAAGCCTCGTAGTGTATAACAAGTGACGAAAGTAA
TAAGAGNcgattttactttaaaagccttaggacatgtccgacccaaatca
atttttgatcggactatgtgtccgaccacctaaatatcgttatttcgagc
cctgtttTTAGCACAGAGGATCAGGTAGTCTATCGTGTGCCAGAAGGATT
CTTGGATGCTGTGGTCCCAGAGTAGTGCGTCGTCGACAATCCTAGCAGAT
CTCGGGAACTCTTGGGTGATGTCATCAAACCCCCGAGTGTACGCATCTCC
GGAGACGTGGTACCCCATTGGGGCGCAGCAGTACCAATACCGACCCCATT
CAGTAATGAAAGTCATACTGTTCTTGGTCGTTTCATGAAGTGGGAGGCTA
TGATATCCATTCAACGCGTCAATTACAGTTCTGTAAGTTTTTATGGGGAA
AGTAGATGCCACATTGAAGGGGCTTGGTGTGTGATGTGGTTCTCGGAGTG
TAGCGCCGTTAAGTTTCTGTAGATCAACAGTTCGGCGGGGTCCCCGTTTT
TCTTTGAGGTGACAATCATACGCGCACACCACTCGGCTGTGGTTCCTTGG
GGGATTTGTTTGATGATCTTGAGACGGACGCTGCGGTCGATgtcttcttt
gactttttgtttcCAGTGGTGTGAGACGGGATAGGCGTGTGAGCTGCGTA
AGGGACTGTGTCTTCTTTAAGATGGAGTCGGATGGGTTCTCCTGTCATTG
TTGGTAGCAGCTCCTGGTGAGGGCATTGGTTAAAGGCGGAAGAGCCGAAC
GCGTCCAGGATCCATGATTTAAGCTTTGGAATGTTCTCTTGCATTGGCTC
GAAGGGGATGTCTTCTGGGCGATTTGGCGGTGGCGTTCTCTCTTGGCAGT
GGCATTCGTCTGATTGTGACTCTGTCCTGTGGAGGCGGAGATGCTTTTTG
GGAAGAATTCGTTGACGATTCCCAAATCTTTCATAGCGGTTTGAGATAGG
TAAAAACCTTTACAGTTTTTCGAAATGTAAACCATTTGACTCGATGAGCG
CGCTCCGTAAGTGATGTGGAGGAAGAGCGTACCCAATATATCGAGAGGGG
CGTGAGTGATGCCTACAATTTTATGTTTGGTTTTTACGAGGTAGGCGTAT
GgacatttcagtttatttaacAGTTCGGTGCCTTTTACGGCGACACTCTT
AATAAAGTTTAATAACTCATTTTCGTTGGCGGTATTGAGGGCTTCCGCCC
GATGTATTCGAATAAAAGGCGGTTGACGTCTTGCGAGCAAGCCG Coding sequence (CDS) from alignment at scaffold_126:255609..257952 >TCONS_00047372 ID=TCONS_00047372|Name=TCONS_00047372|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at scaffold_126:255609..257952 (Clytia hemisphaerica)
TCATTGTTGGTAGCAGCTCCTGGTGAGGGCATTGGTTAAAGGCGGAAGAG
CCGAACGCGTCCAGGATCCATGATTTAAGCTTTGGAATGTTCTCTTGCAT
TGGCTCGAAGGGGATGTCTTCTGGGCGATTTGGCGGTGGCGTTCTCTCTT
GGCAGTGGCATTCGTCTGATTGTGACTCTGTCCTGTGGAGGCGGAGATGC
TTTTTGGGAAGAATTCGTTGACGATTCCCAAATCTTTCATAGCGGTTTGA
GATAGGTAAAAACCTTTACAGTTTTTCGAAATGTAAACCATTTGACTCGA
TGAGCGCGCTCCGTAAGTGATGTGGAGGAAGAGCGTACCCAATATATCGA
GAGGGGCGTGAGTGATGCCTACAATTTTATGTTTGGTTTTTACGAGGTAG
GCGTATGgacatttcagtttatttaacAGTTCGGTGCCTTTTACGGCGAC
ACTCTTAATAAAGTTTAATAACTCATTTTCGTTGGCGGTATTGAGGGCTT
CCGCCCGATGTATTCGAATAAAAGGCGGTTGACGTCTTGCGAGCAAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047372-exon-scaffold_126-1491911889:255609..257952 | TCONS_00047372-exon-scaffold_126-1491911889:255609..257952 | Clytia hemisphaerica | exon |
| TCONS_00047372-exon-scaffold_126-1510915933:255609..257952 | TCONS_00047372-exon-scaffold_126-1510915933:255609..257952 | Clytia hemisphaerica | exon |
| TCONS_00047372-exon-scaffold_126-1575043694:255609..257952 | TCONS_00047372-exon-scaffold_126-1575043694:255609..257952 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_126 | supercontig | scaffold_126:255609..257952 . |
Blast
The following BLAST results are available for this feature:
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