TCONS_00047078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047078
Unique NameTCONS_00047078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1688

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047078 ID=TCONS_00047078|Name=TCONS_00047078|organism=Clytia hemisphaerica|type=transcript|length=1688bp
TGTAAATCACGAccagaaaatttcgaaaattccatAACTGCCATAAATGA
TGGAATTATTTATGTTTGATCAATGTAAGCTTTAAAGTAGTCTTCACATC
GAGAGCAGAGGAGTATATAACGCTCAACGAAATCTATTCGTCATTTTTCA
TGATAAGCAGTGCTGTTGTATTTAGCAATAATCTTTCTATCGTTGAATGG
TTAACGTGTTGATGATATAACCAAATATTTATATAGAAACTATTAACTCT
TGAAACAGACAATTTTGCATATTGGTTGTTACATACAAAGCAAGGGCTTT
TCATATTCAGCCGATAGAAAACAACCATAGTTAATTTGATTCCTGGTTTC
GCTGGCTTGCTTCAGTTTATGAAGTTTTCAGGAGATATACAAACTGCTAC
AATACTTGTTAAAGTTGTCACACAATAAAGATCAAGAAGGCGTCAAAAAG
AATGAGTAAAGTCAAGAAGGTAACACCAAGTCAAATTCGTGCCGGAAAAG
CAGATTTTCCGTTAATCGGTATGCCACTTGGTGGACAACCGGTCATCTCA
CCAACGAAGAAAAAATCGTCAGCTTTCGATTTCCCGAAGAAATTCACAGA
CGATGACCTCCGGGAGCGTCTTACGTCACAACAATACAATGTCACACAGA
AGTCTGGGACCGAGAAAGCAGGGACTGGAGAATTTTACAAACATAAAGGA
AAAGGGAGTTATTTATGTGTTGTATGTCATGAAGATTTATTCGCATCTGC
CACCAAATACGATAGTGGTAGTGGTTGGCCCTCATTTTACGATGTCCAAT
CAAAAGACAGTATCAAACTTATGGCGGATACCTCAATGATGGTACCTCGA
ACTGAAGTGATATGCTCTCAATGTGGGGCACATTTAGGACATGTTTTTAA
TGACGGTCCTAAAGAGACTTGGAAACGATATTGTATCAATTCTTCGTCCT
TATGTTTCAGAGGAGAAGATAAGTAATTTCGATACTGATGCTGGTTGAAT
TTCATCTCAAAGGAACCAAGAACCTTCTTCCGCTTACGGAGAATCGTCAT
CATTACGAATAATGGCTGCTcgaagttcgaattagaaagagttTATTGCA
GTCATCATCGATCTTTTTTGGGAGCAATGGATATTCTGCTAGCACTTACA
AATACATCTAGAGTCAGATACACTGAGTTATGATGGTATTTATACTCTAT
ATGATTGATATGTCGGTCAGACACGGTGACCCATATTAAGATGCTCTGTT
AAACTGAGCTAAAAATCACAATAAGAATTAATTTGTAAACTGTGATTAAA
TTTACATCAATCTCGGTTTAATAGCATTATAAAATACTTCTATATGTAGG
CTGTACTTGTAAGAAGATATAGCAAATTTTTATATCGTTAACAATTTCGT
AATATTTCAACTTCCTTTTGTCATTTTCACATAAAAACACAACCAATAGA
GAAAGCATCCTAGACCTTTTCAAcactagcctgtaccaaactcttctccG
TGAAAGAAGAAACACGCGGAAAGAGTAAAAATCGCCCGTTCGAGTGGTAC
AGGCCTTAAACGtgggaatttttgaaattttcttaaggtgaaaaatcact
ttcaaaattgactgttttcccggaaaattctatATTTACTTTCGTGAAAT
TCATATCCAAAATATTCCCTTTTTATTGATCATGTTAT
Run BLAST on NCBI

protein sequence of Methionine sulfoxide reductase

>TCONS_00047078-protein ID=TCONS_00047078-protein|Name=Methionine sulfoxide reductase|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
MSKVKKVTPSQIRAGKADFPLIGMPLGGQPVISPTKKKSSAFDFPKKFTD
DDLRERLTSQQYNVTQKSGTEKAGTGEFYKHKGKGSYLCVVCHEDLFASA
TKYDSGSGWPSFYDVQSKDSIKLMADTSMMVPRTEVICSQCGAHLGHVFN
DGPKETWKRYCINSSSLCFRGEDK
Run BLAST on NCBI

transcript from alignment at scaffold_120:40666..42353

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047078 ID=TCONS_00047078|Name=TCONS_00047078|organism=Clytia hemisphaerica|type=transcript|length=1688bp|location=Sequence derived from alignment at scaffold_120:40666..42353 (Clytia hemisphaerica)
ATAACATGATCAATAAAAAGGGAATATTTTGGATATGAATTTCACGAAAG
TAAATatagaattttccgggaaaacagtcaattttgaaagtgatttttca
ccttaagaaaatttcaaaaattcccaCGTTTAAGGCCTGTACCACTCGAA
CGGGCGATTTTTACTCTTTCCGCGTGTTTCTTCTTTCACggagaagagtt
tggtacaggctagtgTTGAAAAGGTCTAGGATGCTTTCTCTATTGGTTGT
GTTTTTATGTGAAAATGACAAAAGGAAGTTGAAATATTACGAAATTGTTA
ACGATATAAAAATTTGCTATATCTTCTTACAAGTACAGCCTACATATAGA
AGTATTTTATAATGCTATTAAACCGAGATTGATGTAAATTTAATCACAGT
TTACAAATTAATTCTTATTGTGATTTTTAGCTCAGTTTAACAGAGCATCT
TAATATGGGTCACCGTGTCTGACCGACATATCAATCATATAGAGTATAAA
TACCATCATAACTCAGTGTATCTGACTCTAGATGTATTTGTAAGTGCTAG
CAGAATATCCATTGCTCCCAAAAAAGATCGATGATGACTGCAATAaactc
tttctaattcgaacttcgAGCAGCCATTATTCGTAATGATGACGATTCTC
CGTAAGCGGAAGAAGGTTCTTGGTTCCTTTGAGATGAAATTCAACCAGCA
TCAGTATCGAAATTACTTATCTTCTCCTCTGAAACATAAGGACGAAGAAT
TGATACAATATCGTTTCCAAGTCTCTTTAGGACCGTCATTAAAAACATGT
CCTAAATGTGCCCCACATTGAGAGCATATCACTTCAGTTCGAGGTACCAT
CATTGAGGTATCCGCCATAAGTTTGATACTGTCTTTTGATTGGACATCGT
AAAATGAGGGCCAACCACTACCACTATCGTATTTGGTGGCAGATGCGAAT
AAATCTTCATGACATACAACACATAAATAACTCCCTTTTCCTTTATGTTT
GTAAAATTCTCCAGTCCCTGCTTTCTCGGTCCCAGACTTCTGTGTGACAT
TGTATTGTTGTGACGTAAGACGCTCCCGGAGGTCATCGTCTGTGAATTTC
TTCGGGAAATCGAAAGCTGACGATTTTTTCTTCGTTGGTGAGATGACCGG
TTGTCCACCAAGTGGCATACCGATTAACGGAAAATCTGCTTTTCCGGCAC
GAATTTGACTTGGTGTTACCTTCTTGACTTTACTCATTCTTTTTGACGCC
TTCTTGATCTTTATTGTGTGACAACTTTAACAAGTATTGTAGCAGTTTGT
ATATCTCCTGAAAACTTCATAAACTGAAGCAAGCCAGCGAAACCAGGAAT
CAAATTAACTATGGTTGTTTTCTATCGGCTGAATATGAAAAGCCCTTGCT
TTGTATGTAACAACCAATATGCAAAATTGTCTGTTTCAAGAGTTAATAGT
TTCTATATAAATATTTGGTTATATCATCAACACGTTAACCATTCAACGAT
AGAAAGATTATTGCTAAATACAACAGCACTGCTTATCATGAAAAATGACG
AATAGATTTCGTTGAGCGTTATATACTCCTCTGCTCTCGATGTGAAGACT
ACTTTAAAGCTTACATTGATCAAACATAAATAATTCCATCATTTATGGCA
GTTatggaattttcgaaattttctggTCGTGATTTACA

Coding sequence (CDS) from alignment at scaffold_120:40666..42353

>TCONS_00047078 ID=TCONS_00047078|Name=TCONS_00047078|organism=Clytia hemisphaerica|type=CDS|length=525bp|location=Sequence derived from alignment at scaffold_120:40666..42353 (Clytia hemisphaerica)
TTACTTATCTTCTCCTCTGAAACATAAGGACGAAGAATTGATACAATATC
GTTTCCAAGTCTCTTTAGGACCGTCATTAAAAACATGTCCTAAATGTGCC
CCACATTGAGAGCATATCACTTCAGTTCGAGGTACCATCATTGAGGTATC
CGCCATAAGTTTGATACTGTCTTTTGATTGGACATCGTAAAATGAGGGCC
AACCACTACCACTATCGTATTTGGTGGCAGATGCGAATAAATCTTCATGA
CATACAACACATAAATAACTCCCTTTTCCTTTATGTTTGTAAAATTCTCC
AGTCCCTGCTTTCTCGGTCCCAGACTTCTGTGTGACATTGTATTGTTGTG
ACGTAAGACGCTCCCGGAGGTCATCGTCTGTGAATTTCTTCGGGAAATCG
AAAGCTGACGATTTTTTCTTCGTTGGTGAGATGACCGGTTGTCCACCAAG
TGGCATACCGATTAACGGAAAATCTGCTTTTCCGGCACGAATTTGACTTG
GTGTTACCTTCTTGACTTTACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030012XLOC_030012Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Methionine sulfoxide reductaseTCONS_00047078-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047078-exon-scaffold_120-1491911889:40666..42353TCONS_00047078-exon-scaffold_120-1491911889:40666..42353Clytia hemisphaericaexon
TCONS_00047078-exon-scaffold_120-1510915933:40666..42353TCONS_00047078-exon-scaffold_120-1510915933:40666..42353Clytia hemisphaericaexon
TCONS_00047078-exon-scaffold_120-1575043694:40666..42353TCONS_00047078-exon-scaffold_120-1575043694:40666..42353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_120supercontigscaffold_120:40666..42353 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.119938	0.14035	0.271601	0.345434	36.6187	29.729	33.7697	34.733	15.969	21.8083	18.2756	8.29136	14.4538	8.78093	4.14078	3.11351	15.5404	7.97344	17.8751	23.8815	8.67404	7.70385	3.19044	3.82575	2.80724	4.25227	17.5642	16.0772	26.8374	17.3064
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002579Met_Sox_Rdtase_MsrB
IPR011057Mss4-like
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0033743peptide-methionine (R)-S-oxide reductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0033743 peptide-methionine (R)-S-oxide reductase activity
Blast
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BLAST of TCONS_00047078 vs. Swiss-Prot (Human)
Match: MSRB3 (Methionine-R-sulfoxide reductase B3 OS=Homo sapiens GN=MSRB3 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 3.787e-41
Identity = 71/126 (56.35%), Postives = 88/126 (69.84%), Query Frame = 2 
Query:  593 FTDDDLRERLTSQQYNVTQKSGTEKAGTGEFYKHKGKGSYLCVVCHEDLFASATKYDSGSGWPSFYDVQSKDSIKLMADTSMMVPRTEVICSQCGAHLGHVFNDGPKETWKRYCINSSSLCFRGED 970
            F+  +LR+RLT  QY+VTQ+ GTE A  GE+  HK  G Y CVVC   LF S TK+DSGSGWPSF+DV + ++I    D S  + R E  CSQCGAHLGH+F+DGP+ T KRYCINS++L F   D
Sbjct:   45 FSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPAD 170
The following BLAST results are available for this feature:
BLAST of TCONS_00047078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSRB33.787e-4156.35Methionine-R-sulfoxide reductase B3 OS=Homo sapien... [more]
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