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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046960 ID=TCONS_00046960|Name=TCONS_00046960|organism=Clytia hemisphaerica|type=transcript|length=1469bp
gTTTTAGATAAATTGGTCGAAATGATTTGCAAACATTGATTCAGCTTTTA
AGAAGTTTAAACTCAAAGAAGGAAAACGTTGTTAGTTAGTGTAGAAACAG
TCTAACACAGAGAATttgtattcaaaacaaaacttggtTCAATGGGAACA
TTCGAGCCCTCTATCTGATCATGAAAAATTTCATGATCAGATAGAGTACA
TGTTAAAACAAAAGGGAGGCGAGTGCAGAATGAACTTTGAGACAAAGTTA
GTTCCCtacaaaaataatctttaacatAACCAGCTCCTaaagatacaaaa
aaaaatgttacacTTACATTGTGAAAATAAGTCGATTAAGGTTGAAATAA
CTTCACTTCTCTACTTGTCTacttacaaagaaaatttgaccTCTTTATAT
ATATATACTATTTGGAAAGTAGTTAAAGGGGTCAAACAAAAAGGGTAATG
GCAAATAGCATTCTGAGGAGCAAATATAATTTGCTATTGACTTCAATTAT
GCGAAAATGGGGAAATGGGGAAGGGGAAAAATGGTTTCCTGGAGATTATG
TAACCTCGGGTCTCTGCACGAGTCCAAGGGTTAATTGGGTGGTGTGTTCA
GAATTTCATTGAAACACGACAGTACCaatcattttgtttattttgacttt
tgaaaataagctatttctcAACCCccattttcccttgcagtttgcctatg
gcgtcactattttggtcaaaaaaagttttcccgggcctaatccgcgtccc
ccctctcaaaaatatctgtaatatactgttctttggaatagactaaaaat
ggttaggtcgtaaaaaagatgtcacggaaccccaggcttggccctcTACT
ATtacaaatttaaaattatttttcataaaacaattAACAAGTTCTACACT
ACAATTAAAGACAATTAAAAAGATGGTCACtttaaagccagattgacatt
atgttttccgaggtctgaatcgctgcttCAAAAATGCTGAGCTTGCATAA
AGATTGCAGTTATTCAACTAATCATCAAATCAAAAGATAGCGTGTGACGT
ATGTTCGATTCGACACTGCAATGTCTCTAATATAACATCTTAATGACCAA
AAAGCTGTTTATAATGTTTTGACTGCAAAGTGTCGAATAAGAATTTTAAT
GAATTGTCCGCGTTTTTAATGAAGCTGTGGAATGTGTTTGCAGAATAAGC
AAACAGACTCATGAATAGATATAATACTGGCTTTTAAGATGTTTTAATTC
TACTTTCGTCtttcacaaatatcttcgttcaTCATCTCCATAAGATCATC
CATCGATTCAAATGTTTTACTTTTCACATTACGGATACATTTACTACCTC
TCGAAGCTGAAGATGCCCATCTGTAATGGGTAATGTTTGATGATGAAAAA
ACTTCGCATTCTCTATCGCCTTGTAACATGAAGAACCGATCTCGAATACT
TAAATAAACGATTTCTCCT Run BLAST on NCBI transcript from alignment at scaffold_118:424813..426281 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046960 ID=TCONS_00046960|Name=TCONS_00046960|organism=Clytia hemisphaerica|type=transcript|length=1469bp|location=Sequence derived from alignment at scaffold_118:424813..426281 (Clytia hemisphaerica)
AGGAGAAATCGTTTATTTAAGTATTCGAGATCGGTTCTTCATGTTACAAG
GCGATAGAGAATGCGAAGTTTTTTCATCATCAAACATTACCCATTACAGA
TGGGCATCTTCAGCTTCGAGAGGTAGTAAATGTATCCGTAATGTGAAAAG
TAAAACATTTGAATCGATGGATGATCTTATGGAGATGAtgaacgaagata
tttgtgaaaGACGAAAGTAGAATTAAAACATCTTAAAAGCCAGTATTATA
TCTATTCATGAGTCTGTTTGCTTATTCTGCAAACACATTCCACAGCTTCA
TTAAAAACGCGGACAATTCATTAAAATTCTTATTCGACACTTTGCAGTCA
AAACATTATAAACAGCTTTTTGGTCATTAAGATGTTATATTAGAGACATT
GCAGTGTCGAATCGAACATACGTCACACGCTATCTTTTGATTTGATGATT
AGTTGAATAACTGCAATCTTTATGCAAGCTCAGCATTTTTGaagcagcga
ttcagacctcggaaaacataatgtcaatctggctttaaaGTGACCATCTT
TTTAATTGTCTTTAATTGTAGTGTAGAACTTGTTaattgttttatgaaaa
ataattttaaatttgtaATAGTAgagggccaagcctggggttccgtgaca
tcttttttacgacctaaccatttttagtctattccaaagaacagtatatt
acagatatttttgagaggggggacgcggattaggcccgggaaaacttttt
ttgaccaaaatagtgacgccataggcaaactgcaagggaaaatggGGGTT
gagaaatagcttattttcaaaagtcaaaataaacaaaatgattGGTACTG
TCGTGTTTCAATGAAATTCTGAACACACCACCCAATTAACCCTTGGACTC
GTGCAGAGACCCGAGGTTACATAATCTCCAGGAAACCATTTTTCCCCTTC
CCCATTTCCCCATTTTCGCATAATTGAAGTCAATAGCAAATTATATTTGC
TCCTCAGAATGCTATTTGCCATTACCCTTTTTGTTTGACCCCTTTAACTA
CTTTCCAAATAGTATATATATATAAAGAggtcaaattttctttgtaagtA
GACAAGTAGAGAAGTGAAGTTATTTCAACCTTAATCGACTTATTTTCACA
ATGTAAgtgtaacatttttttttgtatctttAGGAGCTGGTTatgttaaa
gattatttttgtaGGGAACTAACTTTGTCTCAAAGTTCATTCTGCACTCG
CCTCCCTTTTGTTTTAACATGTACTCTATCTGATCATGAAATTTTTCATG
ATCAGATAGAGGGCTCGAATGTTCCCATTGAaccaagttttgttttgaat
acaaATTCTCTGTGTTAGACTGTTTCTACACTAACTAACAACGTTTTCCT
TCTTTGAGTTTAAACTTCTTAAAAGCTGAATCAATGTTTGCAAATCATTT
CGACCAATTTATCTAAAAc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046960-exon-scaffold_118-1491911889:424813..426281 | TCONS_00046960-exon-scaffold_118-1491911889:424813..426281 | Clytia hemisphaerica | exon |
| TCONS_00046960-exon-scaffold_118-1510915933:424813..426281 | TCONS_00046960-exon-scaffold_118-1510915933:424813..426281 | Clytia hemisphaerica | exon |
| TCONS_00046960-exon-scaffold_118-1575043694:424813..426281 | TCONS_00046960-exon-scaffold_118-1575043694:424813..426281 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_118 | supercontig | scaffold_118:424813..426281 . |
Blast
The following BLAST results are available for this feature:
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