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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046951 ID=TCONS_00046951|Name=TCONS_00046951|organism=Clytia hemisphaerica|type=transcript|length=4478bp gtttgtaaattgtctaaatattttatcatgattagtataattacgcatga attaacatattttatgcacagatcgcgaatcgtgcatcgtaaatcgttag atcgtgcatcttaaattacaccaaccctttAGTTACCCCCTGTTGTGGAT GACATGGATTTTCCGTAACAATTTACCTGTAAAAAACTTCAGGATTTCCG TTACATTCAAGTATATGGTTAATATGGTTACTGTATAGCATAATTCTTTA CCAAataaatttatcattttcagtgtcattctgaaacaaaaatttgatcc CAGGTTTCGTGACCTCGATCGATTATTAAGGGGGATTCTGAGAACTCTAT ATAGAGGGAGATTGATtatatggggggggggttgattataccagacccga tcaatcgaacttgtcgaaccaatcgaacaatcaaactaatcaaactccat cgaacgactaaattttgattaaaaaaattaatcgaactccaagatttttt acaagattgtgagtgttcgattaagttccaTCATTAACAACACCAGCTTC CTCAGCAGTTGGCGATGGAACAACCGACATTTTGGCAACTCTGAATTCCT TAATCGACAGCCGACTTAGTGCGTTGTTGCCAACAGCCGCCATCCCTTCT GCTTCAAGTCCTGTCCTTTAAAACCAGGCCAATAACTTTATTCTTCCACa acaattccaaacaacaacaacgtCCGTCACGCCCGGTACCGTAAACGCAA CCGCCTCTAACGCCCTCACGGGAGCAATCAACAACATCAATAATGGTAAC CCAGCTACGAGTACGGGCGATAACGTTTTGCTTTCGTTGCCACTTCTTCA ACAACAACTAGGACAAGTTTtgcaacagcaacaacaacctCAAACTCAAC ATCAATTGTGTACGAACGAACTGCCTGCTATTCCAGCCAAGATTATCAAA CAAATAAAGAATGGTGAGTTCATTGACTTTGACCTCTTGCTGCCTAGCAA TATTGGTAGGCCTGCCAATACTTCTGTTGCATTTGCCTTCGATGGAGATG GAAATATATCTCTCCAACAGCGTAGTGACTCTAGTctgtttacaaaaaaa gctaaggTTATTGACCTAAATTCATGGCTGATGGTGTGGTCCAGGTTCAT TCAAGCCACCTTGGTTTTTCGCCCTTTTCTCGTCAACCAGTTGATTGCAT ACCAAGTGTATATTGCACAACTAGCCAACGATTACTTTTTTAATGGGTGG TATGTATATGACAAAGCCTTCAGAACTTACATCGCAAACAACCCCACCGC TAGGTGGGATATTACTAGTACAACATTATTCAACATGCACCTCCAGGGTC AAAGGGAGCCTAGCAAATGTTACCTTTGCCAAAGCAAGGACCATCTTGCC CCTCGATGCACCGCGTCTTCTGCTTCCCTTTCTGGTCGGTCGTCCTTGAA TCTTGGCTCAGCTCCTCAACCTGCACACCACACCCCTCGTTTGCCTTCCC AGCCTGTCCCTCGCCCTCGGCCCCCTTCTTTTCCTCGTGCACAGTACTTC CAACCCTACCCTTCCCTCCGCCAGCCCTTTCCTAACCCCCAGCAAGCTTC CTCTGCTGCCAATACCACGAAGCAATGCCATCTTTTCAACACAATCTTTT CAACACAAGCCTCCCTTGTCGTCCCGGCTGCAGGTACGTCCACACCTGCC TCATCTGCAGCGACAACCACCCAGCCCTCCAGTGCCCCTACCGTTAGCGA TTTTCAAACCCTACTTGACTTTCCCTCCTTTTCCTTTCTCCCCTCTCCCT CTAAGCCAGCCACCTCTGTGAAACCTGCAGTGCTCCATGAATTGATCTCT GGGTATGACCCTGAAATAAGAGATTTTTTAGTGTCTGGGTTTTTCTATGG ATTCCACATTGGAATTCAAGGGCCCTCTCCCTCAGGACCTGAACGCAACA ACCTTTCGGCCGATTCTAACGGTCAGGCTGTGTCTACAGCCATCTTGAAA GAATTGAAGCGGGGACATACCGCAGGCCCCTTCGACTCCCACCCTCTACC TTCCTTCTTCTGTTCCCCCCTTGGTGCTGCCCCAAAGAAAGATGGAACCC AACGTGTCATCCTGGACTTATCCTTCCCCCTGGCTCTTCTGTTAATGATG GAATCCCTATCGATCTAACTCATGTGGAATACACATCCTTTGATGAAACC CTCAACATGATCCGCCTAGTGGGCCCAGGTTGTTTTATGGGAAAAATCGA CATTAAGCATGCCTTTCGCCTATGCCCCGTTCACCCTGATGACTGGCCCC TTCTAGGTTACCATTGGCAAGGTAGGTATTATTTTGATCTTTGTCTCCCT TTTGGCAGCCGATCCTTCCCCTGTATTTTCAACATGTTTGCTGATGCTCT GCAGTGGATTCTTGTACATAAATGTCTTCTATCTGCTCTCTCCCACTATC TTGACGACTTCATTCTGTGTGCGGTTACTTCAGTCGAAACTCAGCATAAG ATGAATGTTACACAGGCTCTCTTCAAGGACGTTGGTGTCCCCGTCGCTTT GGACAAATTGGAAGGCCCAAGTCAGGTTATGTCTTATCTTGGTATTGAAA TTGACACTGTATCTTCTCTCATTCGTCTTCCTGATGATAAGTTGTCTGCG CTTAAAACAATGGTATCCTCTTGGCGCTCAAAGAAGAAATGTACAAAACG CGAGCTTCTTTCTTTGATTGGGTCTTTGTCGTTTGCCTGCAAAGTGATTC GTCCAGGTCGTATCTTTATGCGTCGCCTAATCGATCTTTCTACTTCTGTG GCTCGTCTCAATCACCATATTGACATTTCCTGTGATGTCCGTCTTGATCT TGACATGTGGGCAGAATTCCTCGATTCCTGGAATGGGTCTTTTATCCCTA CCCCCATCTCCCTTAAGAAGCCTTTTGAGATTTTCACGGATGCTTCCTTT TTGGGTTTTGGCTGCTTTTTCCAGGGTTTATGGATTTCCCAAGCCTGGCC TTtcgatgtttccaattttacCCACATATCCTTCCTTGAGATCTTCGCTG CTTTTGTATCTTTAACAACATGGACTGAGTTTTTTAGGGATTGTAGGATT GTTGTGTTTTCTGACAATGAGGCTACAGTTTCGGTCTGGTCGTCTTCTTC TTCAAAAGACAAGCAAATGATGGCAATTATTAGGGAGATCTTTTTTATTA CTGCTAAGAAGAATATCCTCCTTTCCGTCCGTCACATCCCGGGTTCTAAT AATGTTTTTGCTGATCTCTTGTCCCGTTTACAGGTCAACGCATTCAAATT AGTCTGTCCCGAATCTTGTCCGTACCCATCAATTCCACCAGTCTCTTCAA TGGATCTCTTGGCAAAGATCTTGTTGGGCTCTTAAAAGACTCGTTGGCCC CTTCCACCCAATCCACCTATATGTGCGGCACCCGCTCCTACCTCAATTTT TGCGAGACATCTGGTTTGACCCCATTTCCTGTTTCAGAGTCTTCGTTGTG TTTCTTTGCTGTCTTCTCTTTTAATCGTGGTATAGCTTGCAAAACCATTA AAGTATACATTACTGGAGTACTACACCAAAACACCATGCTGGGTTCCAAT GCATCCCTACCCCTTATGCCCGTCCTTCACAAACTCGTCCGAGGTATCCG ACGTCGCCAAGGCAACTCCTTAACCCGCAAACAAAGAAAACCTATCACCA TGTCCCACCTGCGAATCATTTCCAACTTTTTACTGTGCAGTGGTCACCCT ACACACGATAAATACATGCTCCTGACTGCTTGCCTTACAgccttttttgg ttttttgagaGTTTCCGAATTTACTTGCCCATCACTCAGTTCGTATGACC CAACAGCACACCTCCAAAGATCTGATATTACGTTTAACCCGGATTTTTCA ATTATGTCCGTCCGAATCAAGGCAAGTAAGACTGATCCTTTTCGACTTGG TGTGACCATCCGAATTACCGCCACCTTCGACCAAATTTGTTCTGTGGGTG CAATGAGGAACTATCTAGCCATACGTGATTCATCAATTGGCCCGctcttt aaatttttagatgGCAAATTTCTAACGCGCAGGAAAGTTCATGATCTTCT CGGAAAGTCCCTCCCGCTTGAACACAATTTGAATACCCATAGTTTTCGCA TCGGTGGTGCTTCGNGctctttaaatttttagatgGCAAATTTCTAACGC GCAGGAAAGTTCATGATCTTCTCGGAAAGTCCCTCCCGCTCGAACACAAT TTGAATACCCATAGTTTTCGCATTGGTGGTGCTTCAGCTGCCCTCTCAGC AGGTGTATCTGACTCAATGATACGCATCATGGGTAGATGGTCTAGTGATT GCTATCTTAGGTATCTCAGAATCTCTGACCGAGATATTTCGAAATTTAAC ACTAACATGGCTAAGGTAACTTTTGTTTCGTCCACCTGGGACCCAAATAA TTGGTGatttatataaattttatctCTA Run BLAST on NCBI protein sequence of TCONS_00046951-protein >TCONS_00046951-protein ID=TCONS_00046951-protein|Name=TCONS_00046951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=392bp
MIRLVGPGCFMGKIDIKHAFRLCPVHPDDWPLLGYHWQGRYYFDLCLPFG SRSFPCIFNMFADALQWILVHKCLLSALSHYLDDFILCAVTSVETQHKMN VTQALFKDVGVPVALDKLEGPSQVMSYLGIEIDTVSSLIRLPDDKLSALK TMVSSWRSKKKCTKRELLSLIGSLSFACKVIRPGRIFMRRLIDLSTSVAR LNHHIDISCDVRLDLDMWAEFLDSWNGSFIPTPISLKKPFEIFTDASFLG FGCFFQGLWISQAWPFDVSNFTHISFLEIFAAFVSLTTWTEFFRDCRIVV FSDNEATVSVWSSSSSKDKQMMAIIREIFFITAKKNILLSVRHIPGSNNV FADLLSRLQVNAFKLVCPESCPYPSIPPVSSMDLLAKILLGS Run BLAST on NCBI transcript from alignment at scaffold_118:202617..207094 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046951 ID=TCONS_00046951|Name=TCONS_00046951|organism=Clytia hemisphaerica|type=transcript|length=4478bp|location=Sequence derived from alignment at scaffold_118:202617..207094 (Clytia hemisphaerica) TAGagataaaatttatataaatCACCAATTATTTGGGTCCCAGGTGGACG
AAACAAAAGTTACCTTAGCCATGTTAGTGTTAAATTTCGAAATATCTCGG
TCAGAGATTCTGAGATACCTAAGATAGCAATCACTAGACCATCTACCCAT
GATGCGTATCATTGAGTCAGATACACCTGCTGAGAGGGCAGCTGAAGCAC
CACCAATGCGAAAACTATGGGTATTCAAATTGTGTTCGAGCGGGAGGGAC
TTTCCGAGAAGATCATGAACTTTCCTGCGCGTTAGAAATTTGCcatctaa
aaatttaaagagCNCGAAGCACCACCGATGCGAAAACTATGGGTATTCAA
ATTGTGTTCAAGCGGGAGGGACTTTCCGAGAAGATCATGAACTTTCCTGC
GCGTTAGAAATTTGCcatctaaaaatttaaagagCGGGCCAATTGATGAA
TCACGTATGGCTAGATAGTTCCTCATTGCACCCACAGAACAAATTTGGTC
GAAGGTGGCGGTAATTCGGATGGTCACACCAAGTCGAAAAGGATCAGTCT
TACTTGCCTTGATTCGGACGGACATAATTGAAAAATCCGGGTTAAACGTA
ATATCAGATCTTTGGAGGTGTGCTGTTGGGTCATACGAACTGAGTGATGG
GCAAGTAAATTCGGAAACtctcaaaaaaccaaaaaaggcTGTAAGGCAAG
CAGTCAGGAGCATGTATTTATCGTGTGTAGGGTGACCACTGCACAGTAAA
AAGTTGGAAATGATTCGCAGGTGGGACATGGTGATAGGTTTTCTTTGTTT
GCGGGTTAAGGAGTTGCCTTGGCGACGTCGGATACCTCGGACGAGTTTGT
GAAGGACGGGCATAAGGGGTAGGGATGCATTGGAACCCAGCATGGTGTTT
TGGTGTAGTACTCCAGTAATGTATACTTTAATGGTTTTGCAAGCTATACC
ACGATTAAAAGAGAAGACAGCAAAGAAACACAACGAAGACTCTGAAACAG
GAAATGGGGTCAAACCAGATGTCTCGCAAAAATTGAGGTAGGAGCGGGTG
CCGCACATATAGGTGGATTGGGTGGAAGGGGCCAACGAGTCTTTTAAGAG
CCCAACAAGATCTTTGCCAAGAGATCCATTGAAGAGACTGGTGGAATTGA
TGGGTACGGACAAGATTCGGGACAGACTAATTTGAATGCGTTGACCTGTA
AACGGGACAAGAGATCAGCAAAAACATTATTAGAACCCGGGATGTGACGG
ACGGAAAGGAGGATATTCTTCTTAGCAGTAATAAAAAAGATCTCCCTAAT
AATTGCCATCATTTGCTTGTCTTTTGAAGAAGAAGACGACCAGACCGAAA
CTGTAGCCTCATTGTCAGAAAACACAACAATCCTACAATCCCTAAAAAAC
TCAGTCCATGTTGTTAAAGATACAAAAGCAGCGAAGATCTCAAGGAAGGA
TATGTGGgtaaaattggaaacatcgaAAGGCCAGGCTTGGGAAATCCATA
AACCCTGGAAAAAGCAGCCAAAACCCAAAAAGGAAGCATCCGTGAAAATC
TCAAAAGGCTTCTTAAGGGAGATGGGGGTAGGGATAAAAGACCCATTCCA
GGAATCGAGGAATTCTGCCCACATGTCAAGATCAAGACGGACATCACAGG
AAATGTCAATATGGTGATTGAGACGAGCCACAGAAGTAGAAAGATCGATT
AGGCGACGCATAAAGATACGACCTGGACGAATCACTTTGCAGGCAAACGA
CAAAGACCCAATCAAAGAAAGAAGCTCGCGTTTTGTACATTTCTTCTTTG
AGCGCCAAGAGGATACCATTGTTTTAAGCGCAGACAACTTATCATCAGGA
AGACGAATGAGAGAAGATACAGTGTCAATTTCAATACCAAGATAAGACAT
AACCTGACTTGGGCCTTCCAATTTGTCCAAAGCGACGGGGACACCAACGT
CCTTGAAGAGAGCCTGTGTAACATTCATCTTATGCTGAGTTTCGACTGAA
GTAACCGCACACAGAATGAAGTCGTCAAGATAGTGGGAGAGAGCAGATAG
AAGACATTTATGTACAAGAATCCACTGCAGAGCATCAGCAAACATGTTGA
AAATACAGGGGAAGGATCGGCTGCCAAAAGGGAGACAAAGATCAAAATAA
TACCTACCTTGCCAATGGTAACCTAGAAGGGGCCAGTCATCAGGGTGAAC
GGGGCATAGGCGAAAGGCATGCTTAATGTCGATTTTTCCCATAAAACAAC
CTGGGCCCACTAGGCGGATCATGTTGAGGGTTTCATCAAAGGATGTGTAT
TCCACATGAGTTAGATCGATAGGGATTCCATCATTAACAGAAGAGCCAGG
GGGAAGGATAAGTCCAGGATGACACGTTGGGTTCCATCTTTCTTTGGGGC
AGCACCAAGGGGGGAACAGAAGAAGGAAGGTAGAGGGTGGGAGTCGAAGG
GGCCTGCGGTATGTCCCCGCTTCAATTCTTTCAAGATGGCTGTAGACACA
GCCTGACCGTTAGAATCGGCCGAAAGGTTGTTGCGTTCAGGTCCTGAGGG
AGAGGGCCCTTGAATTCCAATGTGGAATCCATAGAAAAACCCAGACACTA
AAAAATCTCTTATTTCAGGGTCATACCCAGAGATCAATTCATGGAGCACT
GCAGGTTTCACAGAGGTGGCTGGCTTAGAGGGAGAGGGGAGAAAGGAAAA
GGAGGGAAAGTCAAGTAGGGTTTGAAAATCGCTAACGGTAGGGGCACTGG
AGGGCTGGGTGGTTGTCGCTGCAGATGAGGCAGGTGTGGACGTACCTGCA
GCCGGGACGACAAGGGAGGCTTGTGTTGAAAAGATTGTGTTGAAAAGATG
GCATTGCTTCGTGGTATTGGCAGCAGAGGAAGCTTGCTGGGGGTTAGGAA
AGGGCTGGCGGAGGGAAGGGTAGGGTTGGAAGTACTGTGCACGAGGAAAA
GAAGGGGGCCGAGGGCGAGGGACAGGCTGGGAAGGCAAACGAGGGGTGTG
GTGTGCAGGTTGAGGAGCTGAGCCAAGATTCAAGGACGACCGACCAGAAA
GGGAAGCAGAAGACGCGGTGCATCGAGGGGCAAGATGGTCCTTGCTTTGG
CAAAGGTAACATTTGCTAGGCTCCCTTTGACCCTGGAGGTGCATGTTGAA
TAATGTTGTACTAGTAATATCCCACCTAGCGGTGGGGTTGTTTGCGATGT
AAGTTCTGAAGGCTTTGTCATATACATACCACCCATTAAAAAAGTAATCG
TTGGCTAGTTGTGCAATATACACTTGGTATGCAATCAACTGGTTGACGAG
AAAAGGGCGAAAAACCAAGGTGGCTTGAATGAACCTGGACCACACCATCA
GCCATGAATTTAGGTCAATAAccttagctttttttgtaaacagACTAGAG
TCACTACGCTGTTGGAGAGATATATTTCCATCTCCATCGAAGGCAAATGC
AACAGAAGTATTGGCAGGCCTACCAATATTGCTAGGCAGCAAGAGGTCAA
AGTCAATGAACTCACCATTCTTTATTTGTTTGATAATCTTGGCTGGAATA
GCAGGCAGTTCGTTCGTACACAATTGATGTTGAGTTTGaggttgttgttg
ctgttgcaAAACTTGTCCTAGTTGTTGTTGAAGAAGTGGCAACGAAAGCA
AAACGTTATCGCCCGTACTCGTAGCTGGGTTACCATTATTGATGTTGTTG
ATTGCTCCCGTGAGGGCGTTAGAGGCGGTTGCGTTTACGGTACCGGGCGT
GACGGacgttgttgttgtttggaattgttGTGGAAGAATAAAGTTATTGG
CCTGGTTTTAAAGGACAGGACTTGAAGCAGAAGGGATGGCGGCTGTTGGC
AACAACGCACTAAGTCGGCTGTCGATTAAGGAATTCAGAGTTGCCAAAAT
GTCGGTTGTTCCATCGCCAACTGCTGAGGAAGCTGGTGTTGTTAATGAtg
gaacttaatcgaacactcacaatcttgtaaaaaatcttggagttcgatta
atttttttaatcaaaatttagtcgttcgatggagtttgattagtttgatt
gttcgattggttcgacaagttcgattgatcgggtctggtataatcaaccc
cccccccatataATCAATCTCCCTCTATATAGAGTTCTCAGAATCCCCCT
TAATAATCGATCGAGGTCACGAAACCTGggatcaaatttttgtttcagaa
tgacactgaaaatgataaatttatTTGGTAAAGAATTATGCTATACAGTA
ACCATATTAACCATATACTTGAATGTAACGGAAATCCTGAAGTTTTTTAC
AGGTAAATTGTTACGGAAAATCCATGTCATCCACAACAGGGGGTAACTaa
agggttggtgtaatttaagatgcacgatctaacgatttacgatgcacgat
tcgcgatctgtgcataaaatatgttaattcatgcgtaattatactaatca
tgataaaatatttagacaatttacaaac Coding sequence (CDS) from alignment at scaffold_118:202617..207094 >TCONS_00046951 ID=TCONS_00046951|Name=TCONS_00046951|organism=Clytia hemisphaerica|type=CDS|length=1179bp|location=Sequence derived from alignment at scaffold_118:202617..207094 (Clytia hemisphaerica) TTAAGAGCCCAACAAGATCTTTGCCAAGAGATCCATTGAAGAGACTGGTG GAATTGATGGGTACGGACAAGATTCGGGACAGACTAATTTGAATGCGTTG ACCTGTAAACGGGACAAGAGATCAGCAAAAACATTATTAGAACCCGGGAT GTGACGGACGGAAAGGAGGATATTCTTCTTAGCAGTAATAAAAAAGATCT CCCTAATAATTGCCATCATTTGCTTGTCTTTTGAAGAAGAAGACGACCAG ACCGAAACTGTAGCCTCATTGTCAGAAAACACAACAATCCTACAATCCCT AAAAAACTCAGTCCATGTTGTTAAAGATACAAAAGCAGCGAAGATCTCAA GGAAGGATATGTGGgtaaaattggaaacatcgaAAGGCCAGGCTTGGGAA ATCCATAAACCCTGGAAAAAGCAGCCAAAACCCAAAAAGGAAGCATCCGT GAAAATCTCAAAAGGCTTCTTAAGGGAGATGGGGGTAGGGATAAAAGACC CATTCCAGGAATCGAGGAATTCTGCCCACATGTCAAGATCAAGACGGACA TCACAGGAAATGTCAATATGGTGATTGAGACGAGCCACAGAAGTAGAAAG ATCGATTAGGCGACGCATAAAGATACGACCTGGACGAATCACTTTGCAGG CAAACGACAAAGACCCAATCAAAGAAAGAAGCTCGCGTTTTGTACATTTC TTCTTTGAGCGCCAAGAGGATACCATTGTTTTAAGCGCAGACAACTTATC ATCAGGAAGACGAATGAGAGAAGATACAGTGTCAATTTCAATACCAAGAT AAGACATAACCTGACTTGGGCCTTCCAATTTGTCCAAAGCGACGGGGACA CCAACGTCCTTGAAGAGAGCCTGTGTAACATTCATCTTATGCTGAGTTTC GACTGAAGTAACCGCACACAGAATGAAGTCGTCAAGATAGTGGGAGAGAG CAGATAGAAGACATTTATGTACAAGAATCCACTGCAGAGCATCAGCAAAC ATGTTGAAAATACAGGGGAAGGATCGGCTGCCAAAAGGGAGACAAAGATC AAAATAATACCTACCTTGCCAATGGTAACCTAGAAGGGGCCAGTCATCAG GGTGAACGGGGCATAGGCGAAAGGCATGCTTAATGTCGATTTTTCCCATA AAACAACCTGGGCCCACTAGGCGGATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00046951-exon-scaffold_118-1491911889:202617..207094 | TCONS_00046951-exon-scaffold_118-1491911889:202617..207094 | Clytia hemisphaerica | exon |
| TCONS_00046951-exon-scaffold_118-1510915933:202617..207094 | TCONS_00046951-exon-scaffold_118-1510915933:202617..207094 | Clytia hemisphaerica | exon |
| TCONS_00046951-exon-scaffold_118-1575043694:202617..207094 | TCONS_00046951-exon-scaffold_118-1575043694:202617..207094 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| scaffold_118 | supercontig | scaffold_118:202617..207094 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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