TCONS_00046894 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046894
Unique NameTCONS_00046894
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046894 ID=TCONS_00046894|Name=TCONS_00046894|organism=Clytia hemisphaerica|type=transcript|length=293bp
GCCGAATACTTTTGTCATCAAATGAAATGATTCCCATTGTCTGTTTATCA
CTGTCGTCCGAATGTCCTTGGTACTCTACATCTACGCCTGGTTCTTGCTT
TCCGGGGTAAACATAAGGTTGCTGTTGGTCTGCTGGTACTGGTTGGTAGC
CTTGCGTTGGTGGTGGATAAGCCATCCCTGTATTAGGAGGAGGGTAAGCA
CCATCCTGAGGTTGGTATAGAGGTGCTTGGTATCCAGGATTTTGTGACGC
TTCGTAGCTTGGAGGTTGTGCCattataaaatctttattttct
Run BLAST on NCBI

transcript from alignment at scaffold_118:195698..196032+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046894 ID=TCONS_00046894|Name=TCONS_00046894|organism=Clytia hemisphaerica|type=transcript|length=335bp|location=Sequence derived from alignment at scaffold_118:195698..196032+ (Clytia hemisphaerica)
GCCGAATACTTTTGTCATCAAATGAAATGATTCCCATTGTCTGTTTATCA
CTGTCGTCCGAATGTCCTTGGTACTCTACATCTACGCCTGGTTCTTGCTT
TCCGGGGTAAACATAAGGTTGCTGTTGGTCTGCTGGTACTGGTTGGTAGC
CTTGCGTTGGTGGTGGATAAGCCATCCCTGTATTAGGAGGAGGGTAAGCA
CCATTCTGAGGAGGGTAGGCACCATTCTGAGGTGGGTAGGCACCATCCTG
AGGTTGGTATAGAGGTGCTTGGTATCCAGGATTTTGTGACGCTTCGTAGC
TTGGAGGTTGTGCCattataaaatctttattttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029921XLOC_029921Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046894-exon-scaffold_118-1491911889:195698..195894TCONS_00046894-exon-scaffold_118-1491911889:195698..195894Clytia hemisphaericaexon
TCONS_00046894-exon-scaffold_118-1510915933:195698..195894TCONS_00046894-exon-scaffold_118-1510915933:195698..195894Clytia hemisphaericaexon
TCONS_00046894-exon-scaffold_118-1575043694:195698..195894TCONS_00046894-exon-scaffold_118-1575043694:195698..195894Clytia hemisphaericaexon
TCONS_00046894-exon-scaffold_118-1491911889:195937..196032TCONS_00046894-exon-scaffold_118-1491911889:195937..196032Clytia hemisphaericaexon
TCONS_00046894-exon-scaffold_118-1510915933:195937..196032TCONS_00046894-exon-scaffold_118-1510915933:195937..196032Clytia hemisphaericaexon
TCONS_00046894-exon-scaffold_118-1575043694:195937..196032TCONS_00046894-exon-scaffold_118-1575043694:195937..196032Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:195698..196032 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.51329	4.27472	24.5611	1.66231	119.171	103.42	110.759	106.245	44.935	42.5082	59.8316	31.0189	43.9822	59.3233	45.958	37.646	45.5974	53.3001	35.0244	56.7864	0	0	9.75456	2.64842	119.299	97.9247	0	14.0662	0.00024312	15.9483
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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