TCONS_00046810 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046810
Unique NameTCONS_00046810
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046810 ID=TCONS_00046810|Name=TCONS_00046810|organism=Clytia hemisphaerica|type=transcript|length=1327bp
cagCTAAAATACAAAACATCGAGTTTAGCACAAAATGTAGACACGGAGCT
TGAAAACCTCGAATTGCCAGACGACGATACAAAAAGTTCAATGAAACCTA
ACATCTAAATGGCacaactttcaaataaaaacagcTTCAATGCGATACTG
TTGATTGTTCTGGCTTCAGGATTGTTGATGTTTTATACACTGTTTGGTAC
TGGCGAAACATTTGGTTTGGTGTTTGGTGGCAACAACAAAGgTTATGAGA
AGAAGCCTGCATACAAAATCATCAACAAAATCTATAAACCTTCAACGACA
TCGACAACAACGAAAACGACTTTGACTACGACGATAGgaaacaaaaccaa
aaacaaaGGAGACCACAATGCAATTTCCGAAAAGAGATGGTTGGCTGAGA
CCAATAAAGATCACCAAGCCATTTACAGTCAGCTGAAACCCGTCCAATGG
TACAAAGACAACTGGAAAGGCGATTGTCCTTATCCGTCCTATGTGTTTCG
AAAGCTTGAGAGTCAATCTTGGTTTCCATTATATTTGCATCACCAAATGA
AAGTCAATCTATCTCAAACCATACCAAAACGACTCAAACAAAGCTGTACC
AGATGGTGGCACGCACATGCAGAAGCAGATTTTGTCGACCTTCCACATCG
CAAATTTACATGGAAAGAACAGAAACCCAACCACGTGCGTCCTAATTGCT
CTTTTGGACAAAAACGCAGACCTTGGACCCGATGTTCAAAGAAACATCAA
GAGTTATGGACTGTGTTAGATAAGCTAGGTGTAATTTACTTCATACGGTC
TGGGTCCGAACTTGGAGTGATCAGAGGCAGTTCTTACCTCTCCATGGGTG
AGGAATGGGACGTCGATGTCTTTGTAGATGTACCACAAGAAAAACTGATT
CGATTACTAAGAAATAAACTTAATCCTCGTCCTCATGTAGATGGATCCTT
AAAAAGCGTTACAGCTGAAACACATTGGCACGTGAAAGGTTGCCCTGAAA
TCCACATGGTTTTTAATGAGTGGATGGTTGATCAAATGGTGCAAGAAATA
CCACGACCAACACACGATAGCCTGTGTACTTGTTATATGAACTCTGCCAA
ATTAGCTTGCCATAAAGACGCGATAGAAAGAATGTATGCACAATATGGAC
CTTCTTGGTTTGTCCCTCTCCATgcaaaatttcttgattttcctTGGGCA
GCAAGAGGCAAAAATATTCAAcctaaacttaaaaagttaacaTCTCCAGA
TGGAATAATTTACGAAAAAGCAGTGAGAGATCTTGATCGTAGCATCCAGT
ATACAAAATACGATATGGAAATGATNN
Run BLAST on NCBI

transcript from alignment at scaffold_117:451775..456855-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046810 ID=TCONS_00046810|Name=TCONS_00046810|organism=Clytia hemisphaerica|type=transcript|length=5081bp|location=Sequence derived from alignment at scaffold_117:451775..456855- (Clytia hemisphaerica)
CAGCTAAAATACAAAACATCGAGTTTAGCACAAAATGTAGACACGGAGCT
TGAAAACCTCGAATTGCCAGACGACGGTGGGTGCCACCCAATATTTGAAA
ATCAGAAATTTTTAGTTAAAAACGGAGAAGAAACGCTGAATATTTGAGAA
ATTTAAGACCTTAATCGAGGCTTTTCCCAAAAATAAGCTATTTGAGGGAC
GAAAATCTTTAGCTTTTCAGGACTTTTATTTTGTAACAGAGACTGACTGA
AATGAGATTGATGTGTTTAACCACCCACAGGGGATTTTTAAGGCCCAAAA
AGATGCCCCTATAAAGCGGTCCGTATCCGTTTTCTGTATTTGCACAGGTG
ACCCCCGACCTAAAAGCACACCTAAAAGATTCATTCGAGAAGAGCACTCA
TGACAATTTCTATTAATATTTTCTAGATACAAAAAGTTCAATGAAACCTA
ACATCTAAATGGCACAACTTTCAAATAAAAACAGGTAAAAAGTTTCCTTT
GAAGCATTTATCTAATTCTAAAAAGTTGATTCTGTAAAAAATCACTCTTC
ATGTTATTTGTAGACTGGTACGCCAGTCGGGCTAAAACGGTATCACGCTG
GGAAAGTGAAGCGTAGGAGTTAGGCAAGCGTAAGAAGAAATTTTGCCAGC
GAAAAGGGCTAAGAGCCTTGTTAATCAGCAGCCTCTCACCAAATTTTCTC
ACTCTCCTACACAGCTCCTATTCTAACAAACACCCGTCACCTTTATGTTC
CCGCCTGCTGACATGATTAATCAACAGACTAGTTTGCTAGTCTATGTTAT
TTGTTGAACGAAATGTCTATTTTGTTGTTGTTTTTTCTTTTCTTTCTAGC
TTCAATGCGATACTGTTGATTGTTCTGGCTTCAGGATTGTTGATGTTTTA
TACACGTAAGTAGTAGTGCCAGAATCAAAGGGATTTCCAAAATCTTCATA
GGACTAACGAGGATCAAGTTTTGATTGGAACTGAGAGTAAATCCAAATTA
TAACGGTAATTTGAAGTCCAACGGGGAGTCAAATTTGTTCGAATTACAGA
AAGATTCAAATTACCAAGAACTGTATTTATTTTTTCTCAAACCATTTTAG
TGTTTGGTACTGGCGAAACATTTGGTTTGGTGTTTGGTGGCAACAACAAA
GGTAAAAGAACATTCAAAGTTTTTGAAGCCTTCGTTTGTTTTTAAATTTT
TCATTTGACGATTTTTCGAATACTTTAATCGGATTAAATTTCGCGAGATT
AAATTTCGCGAGCGAAAAAAATCGCGAAATTTTCTGGATTTAATTTTGCA
TGGATTCAATTTCGCGAATAAGCCTGAAAACAGCTGAAAAATAGCCATTT
TTTGCCAAAAATGTAGACATTAGATTGGTTTCTCCGCCGAAAATGCAATT
TTAAAATTTCTATGGTGAATATAATTTCATGAGTCAAGAATCTCATGCCT
TTTCGCGAGTTTTAATTTCGGGAAGGTTACAAAAATTCGCGAAATCGCGA
AATTTAATCTCGCGAAAGTTAATCTGATTAAAGTATCTCCGGGCAATTTC
CTTCAAAATTGGGTGTTATAGATTCAATAAAGCCTAAAAATTTTCTAAGC
ATGGCTTTTCTGCCGTAGGAAGCATTTTCATATTGGGGGGCTGAAGTTTA
GTGACCTCGCGAGGGCCAACCATGGTTTGGCCCGAGGGGGGAAATTTTGA
AAATTTGAGCTCTAGATTGCTTAAAAATACACTCAAAACATGCACATAAA
GACAATTATGACAAATTAAAAAAGAAAAACTTTGCATTTTGCAAAATAAC
CATTTTTGAAAAAATTATTGGGGGCCTTGCCCTCCCCAGTTGCTACGGCA
CTGTTTTTAATATCAGCCATCGAAATCTTATGTTCTTGGAAAGTTTGTCA
TTATAAAAATGTGGACTATGTACCACCAATCCCTGGTGTTAAAAAAACCT
TAAATCTCATTACCATTTCTGGAAACTTTATGTCATCGCCGCACTGAGAA
AGATTAGCGTTTGAGAATCCTAACTGCGTTTGTTGGAAATATGCTGATGT
AGCAAAAACAAGTGCGACAAGATTAGAAAAAGGTTTTGAAAAAATTAAAA
TACATTGAATAAAAAACATTCCTCAAACAAAGGGATTGATACTTACCCTC
TTTCGAATGTTTAAAAAAATGTTTAAAATAATCAAAACATTCGGTTGTAA
ATTTGTTCGAAATCAACTTTGCTATTTTTTTGTTTACAAAAGCAATAGAA
TGTGAGGTCACATCTCAAAACCACTTTCGATCTTTCACTTGTTTGTAGGA
TATCGTTGCGTAAAAAAGTAGCTTAAATTTATCTGACTCAGCATGATGAC
ACTGTCTAAAACTAGGTCACAGTGTGGATCTAAACCACACTGAAACGACC
ACCTTCCATCACGCATCATGCTCGCGAAAGAGCGCACGCACATTATAAAC
GCGTACGTGTCATCTCCAGTACATTTTAGATTATTCATTGAAAACAGATT
ACAATATAGTCATTTTTTCATGTCTCGATTATTCAATTCCGAATAAAAGA
CATTCAGGGGAAAAAAGAGAAACACCTGGGTAATCTAGTAAAACAGGCCG
AAAGTAAATGGTAGACAAAGTAATAAGCCAAGGCAAAACGAGATTAGCGT
ACCACTATGAAAGAAACCGCCTCCGGCGGTCGATAAGCTCCTTTTATTCC
CATAGGAAACCTTTAAAAGAGGATATTTTCCATCGCCTCGTTGTTATTTA
GCTTTTTCATTTTATCTCAACGGTTTAAAGAACTCTTGCTAGGTTAGCGA
AAATNTAGCTTTTTCATTTTATCTTAACGGTTTAAAGAACTCTTGCTAGG
TTATAGCGGAAAAGTATTTCATCAAATAATGTAATGTTAATCTAGTATTT
TCCGTAACAAGTTTTGAACTGGGCCCGGGGACTGGGCCTCTGCCTATCTC
GTCAGGATCAGGAAAATTGACCGACAGAAAATTGCAAAAAAAACATTTGT
TTCGCCGCACATACCGTCACTCGATAAACCCACTACCCCAAAGGCTATTC
TAAATATCAATTTTCACATCTAATATAAATTTATTTGATTCTTAGGTTAT
GAGAAGAAGCCTGCATACAAAATCATCAACAAAATCTATAAACCTTCAAC
GACATCGACAACAACGAAAACGACTTTGACTACGACGATAGGAAACAAAA
CCAAAAACAAAGGAGACCACAATGCAATTTCCGAAAAGAGATGGTTGGCT
GAGACCAATAAAGATCACCAAGCCATTTACAGTCAGCTGAAACCCGTCCA
ATGGTACAAAGACAACTGGAAAGGCGATTGTCCTTATCCGTCCTATGTGT
TTCGAAAGCTTGAGAGTCAATCTTGGTTTCCATTATATTTGCATCACCAA
ATGAAAGTCAATCTATCTCAAACCATACCAAAACGACTCAAACAAAGCTG
TACCAGGTACTATACTGTGTGTTCCGAAAAAAGCGGATAAATTTTTATGT
AGGGGATGAGGGACATGATGGAGTTTTTACAAGCTCTCGTTAATCAGTAA
TAAAACAATTTTGTTAGTTTTTCTAAAGAACGCGTCATTCTTATTACTTC
AAATGACTAATTATTAAAGTATCTTATAAAAACTCCAGCATCGTGTATTC
CCGTCCGAGAGTTACTACAAATTTGGAAAATAAAACTTAGTAACCAAATT
TAAAACTCAAAAACACAAAGACAGGGGTACCTCTCGGACAGGAGTTTTAC
CCCCAGTGTGCATCCCCCATATTACCTTATCGGGTAAAAAAATGTCGGAG
TTTTATTTAGTCGGGGTTTTTTTTCGTCAGGGAAAAATTTCGTCACCTAG
AGGCATTTTCGTGACTTTCCCCCGACCAAAATTCCAAATTCGTCATTTTT
CCCCGACGAAATTTACAATTTAGTCACTTTCACCCAACTTAATTGTCCAA
AGGAAATGGTTTCCTTCACTAGCTCGAAAAAAGATCTTGTAATTTGACGT
TTAAAGCACTATTTTCGTTTAATAAAGGTGTAAAAAATTTGAATTTTAAT
TTTGGTTGGGGTTTAAAAATTGGGTAAAAGTTTTGGTCGGGGATAAAAAA
ATCGGGTAAANTGGGGTTTAAAAAATTGGGTAAAAGTTTTGGTCGGGGAT
AAAAAAATCGGGTAAAAGTTTTGGTCGGGTGATAAAATATCGGGGAAAAA
ATTCATCGGGGGAAAATTTCGTCACCCCCTCAAAATTTTCGTCACTTTCC
CCCGACGATTTTTTCCCCGATAAGGTATAACATATCATATGGTATGTACG
GAGCCTACCGTTTGACGTCTTTGACTGACAAACTTACTTTGTCTTTCCAT
TCGTAGATGGTGGCACGCACATGCAGAAGCAGATTTTGTCGACCTTCCAC
ATCGCAAATTTACATGGAAAGAACAGAAACCCAACCACGTGCGTCCTAAT
TGCTCTTTTGGACAAAAACGCAGACCTTGGACCCGATGTTCAAAGAAACA
TCAAGAGTTATGGACTGTGTTAGATAAGCTAGGTGTAATTTACTTCATAC
GGTCTGGGTCCGAACTTGGAGTGATCAGAGGCAGTTCTTACCTCTCCATG
GGTGAGGAATGGGACGTCGATGTCTTTGTAGATGTACCACAAGAAAAACT
GATTCGATTACTAAGAAATAAACTTAATCCTCGTCCTCATGTAGATGGAT
CCTTAAAAAGCGTTACAGCTGAAACACATTGGCACGTGAAAGGTTGCCCT
GAAATCCACATGGTTTTTAATGAGTGGATGGTTGATCAAATGGTGCAAGA
AATACCACGACCAACACACGATAGCCTGTGTACTTGTTATATGAACTCTG
CCAAATTAGCTTGCCATAAAGACGCGATAGAAAGAATGTATGCACAATAT
GGACCTTCTTGGTTTGTCCCTCTCCATGCAAAATTTCTTGATTTTCCTTG
GGCAGCAAGAGGCAAAAATATTCAACCTAAACTTAAAAAGTTAACATCTC
CAGATGGAATAATTTACGAAAAAGCAGTGAGAGATCTTGATCGTAGCATC
CAGTATACAAAATACGATATGGAAATGATNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029867XLOC_029867Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046810-exon-scaffold_117-1575043694:456780..456855TCONS_00046810-exon-scaffold_117-1575043694:456780..456855Clytia hemisphaericaexon
TCONS_00046810-exon-scaffold_117-1575043694:456372..456429TCONS_00046810-exon-scaffold_117-1575043694:456372..456429Clytia hemisphaericaexon
TCONS_00046810-exon-scaffold_117-1575043694:455951..456006TCONS_00046810-exon-scaffold_117-1575043694:455951..456006Clytia hemisphaericaexon
TCONS_00046810-exon-scaffold_117-1575043694:455705..455755TCONS_00046810-exon-scaffold_117-1575043694:455705..455755Clytia hemisphaericaexon
TCONS_00046810-exon-scaffold_117-1575043694:453400..453760TCONS_00046810-exon-scaffold_117-1575043694:453400..453760Clytia hemisphaericaexon
TCONS_00046810-exon-scaffold_117-1575043694:451775..452499TCONS_00046810-exon-scaffold_117-1575043694:451775..452499Clytia hemisphaericaexon
TCONS_00046810-exon-scaffold_117-1510915933:456780..456855TCONS_00046810-exon-scaffold_117-1510915933:456780..456855Clytia hemisphaericaexon
TCONS_00046810-exon-scaffold_117-1510915933:456372..456429TCONS_00046810-exon-scaffold_117-1510915933:456372..456429Clytia hemisphaericaexon
TCONS_00046810-exon-scaffold_117-1510915933:455951..456006TCONS_00046810-exon-scaffold_117-1510915933:455951..456006Clytia hemisphaericaexon
TCONS_00046810-exon-scaffold_117-1510915933:455705..455755TCONS_00046810-exon-scaffold_117-1510915933:455705..455755Clytia hemisphaericaexon
TCONS_00046810-exon-scaffold_117-1510915933:453400..453760TCONS_00046810-exon-scaffold_117-1510915933:453400..453760Clytia hemisphaericaexon
TCONS_00046810-exon-scaffold_117-1510915933:451775..452499TCONS_00046810-exon-scaffold_117-1510915933:451775..452499Clytia hemisphaericaexon
TCONS_00046810-exon-scaffold_117-1491911889:456780..456855TCONS_00046810-exon-scaffold_117-1491911889:456780..456855Clytia hemisphaericaexon
TCONS_00046810-exon-scaffold_117-1491911889:456372..456429TCONS_00046810-exon-scaffold_117-1491911889:456372..456429Clytia hemisphaericaexon
TCONS_00046810-exon-scaffold_117-1491911889:455951..456006TCONS_00046810-exon-scaffold_117-1491911889:455951..456006Clytia hemisphaericaexon
TCONS_00046810-exon-scaffold_117-1491911889:455705..455755TCONS_00046810-exon-scaffold_117-1491911889:455705..455755Clytia hemisphaericaexon
TCONS_00046810-exon-scaffold_117-1491911889:453400..453760TCONS_00046810-exon-scaffold_117-1491911889:453400..453760Clytia hemisphaericaexon
TCONS_00046810-exon-scaffold_117-1491911889:451775..452499TCONS_00046810-exon-scaffold_117-1491911889:451775..452499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:451775..456855 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.0214	31.9942	16.8506	15.2766	7.52576	3.6927	2.99216	2.78961	3.64679	2.45196	5.40223	5.52883	27.0443	28.1352	12.3779	12.2484	2.31255	3.74037	52.1798	39.1179	1.45429	1.15661	14.9394	11.3986	0.0913729	1.08962	1.10256	0.571669	5.68089	8.00677
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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