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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046803 ID=TCONS_00046803|Name=TCONS_00046803|organism=Clytia hemisphaerica|type=transcript|length=2187bp
ctcagaaagaataaataaataaaaattcaagatgAAGACAATTACAGTGG
TGGCGTTTGCAGTATGTTCTCTGATAGCTTTGGCAAATGCAAGATATGTT
AGTGATTATGAGATGGCGGAGGATTTTGAGACTTGGCGTCGTTCGATTGG
CCAACCCGGTTCGTTATGGGATTGCGTCCAACCTTGTATGGAAAATGAAG
GCCGATGGGAAACATGTAGATGGCAATATGAAGAGTGCAGACAAAGATTT
ATTGATGGAAAAAGACGACGATAATTCTATTGCTGTTTTGTTATATGATA
GATTCGATAGATttacttttgtttatatcaataattaaaaaataatttat
ttcagGAAATTGAACGTTAGTTTTCTCACCCAAGATGAACTCCTCTacga
attcatgatattcatgacgtaatgttttctacggaaagaccccggttttt
gccagtagtggcaaattttatacaacttttgccTAGTTTGAATTCGTGAC
TACttgctaaaaccggggtatttccgtagaaaacattacgtcatgaataa
tacgtaatatcatgaatagtgcCTGTGCACAATGCATTCTGTCACTGTAT
AATGCCCAAAGATGTGAAAACCCACCACATGATCTCCCCGAAAAGTTACA
CCAAGATGTGACTTTTCAAAGCCATGACAAGCCCGCCTGAACCATTTGTC
CCTTTTATAGATTTTATAGGATTAGGTTAAATCTGAGTAaggcaaaaata
tattttacttttagCAGAAGTGTCATCTGATGGTCAttgggtgcctaata
aacgtccACCCCCTCCCCACTGTTTAAaacttttcgaaaatatttttacg
aACATTATTGTAGATCGTCATCAtaccttttacgccggccctttttTATT
ACGCCacggcctaattttgggcttacgtcaattagggccgttaataacgc
caaaatttgtaaaaatggctacttatgcttcaaattagtaaataatgatg
taatttttcagtagtaaactgttgaaaattccatcgaaaatcaatgattt
ttaaatatattaaatatttcaatgttttaaatatggagtaaaacaatgga
tataattttcgtcttcgaatcatacctaaaatccattaaattgagaaata
atgattaaaaattaacgccacttttaggttaaaattataaaatcttggcc
ctttttacgccggccttaATTACGCCACGAGCCAAAAAATAACGgaaata
agggccggtgtaaaaagggccgataagttAATCATAAAAAACTGAGCTAC
TGTAAGGGGCTGGGTTCGAGCTTGGTTTATTTCTTACAATAAATGTTATA
GACTGGGTGTTTAACCGTCAACTGTCCTGATTCGTTATACATGAAAGACA
TATCTTGTCTTTGACATACATCCAGCATTTCGACGACCAGTGGCTCATAA
TCCACCGTATGGATACTGGCAGCAATCCAATGAATAAAGTCATCCAAAGA
TTGGATTCCCTGAAACACTAACCTATATTCTTCGCTTATATCCAAATCAC
CAAATCCAGCTGTAATTAATAAGTTTTTGATTTCATCAACTCCGATGTAA
TAGAAATTACTGGTTATCTTTTCGTAAACTGACAATTGACGTATCacagt
tttaaaaaaatcagacCCATTCGAAGGATTTAATAACAGCTGACCACCAC
GtttcaaacatttaaaaatactttttaaagtAGCTTCTTTTTCAGCAGGT
GTCAACCAATGTAATACAAATACCATGATCACCAAATCAAAATCATCTCC
AAAGTTCGAAGCATCTCTACCAAAAGCCTGGTGAAATTCCAAGTTTGATG
TATCGCTAAATGCGTCTTTTGCTTTTTCGATTCGTTCTTTGATAGGATCA
ATACCAACAACTTTTCCTTTTcctccgaccatttttgaaagttgaaaagt
ATTGTTTCCAGTACCGCAACCAACGTCTAAGATTTTCCAACCTTTtttga
ttcgaatgttttgaatgaGCCCTTCGAAGCCTTTAACTTGCATTACTTTG
CTAAATGTATGATATATTTCCGATGCATCGTTTGTTTTTTGACCCGCTGG
CATTTTGTTATGAATAATTGTCAATGTTTAACTTTGAAATTTGGTTCACA
TATCAGATGTGTTTTCACTAACTCTGACCTACTGGCT Run BLAST on NCBI transcript from alignment at scaffold_117:382882..386533- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046803 ID=TCONS_00046803|Name=TCONS_00046803|organism=Clytia hemisphaerica|type=transcript|length=3652bp|location=Sequence derived from alignment at scaffold_117:382882..386533- (Clytia hemisphaerica)
CTCAGAAAGAATAAATAAATAAAAATTCAAGATGAAGACAATTACAGTGG
TGGCGTTTGCAGTATGTTCTCTGATAGCTTTGGCAAATGCAAGATATGTT
AGTGATTATGAGGTAATGTAAACTCCAAGTTAATTCATTAATTGATCGCA
CGTTTTTTATATTTTTATAAGCATATATTAGGTTCAAATCTTGGAAAAAC
TTAAGCATTGCCTACGCATATGCTGAGCCTCAAGCAAACTTTCAAAACGT
TTGATCTCCCAAATTTCAAAAAAAAAATCCATTAAATAGGAGCATAGCAT
AAACATATGTCCAGGGCTCACAAAAGTTTACCCTCTTCTTATAAAAAAAC
GTGTAATTCTTTAAAAATAGATCTTATCGGAGTTTTTGATTTTTCTAAAA
AGGCGATGCATTGTGGGATTGTTTCGGGTGTATTACAATAGAATTCCCTC
CATGAATTCCTAAGAGATTTCTATTGTAATACTCCCGAAACAATCCCACA
ATGCATCACTTTTTTAGAAATATAAAAAACTCCAATAAGATCTATTGTGT
TCACTCCTGCCTCAATGTCCTTATGGAAATCTTCTAAGCAAGTGGGGATA
AACTAAAAGAGCCAAATGGTGATGGGTTTGAGAACTCATTAAAAATGCCA
TGCTACTATCCATTGGTTTTAATTCTATTGTTTTATACGGTATTACTTCG
AAAAAACGTCCGGGGCGTTTATTTAATTTTTTCGATTTTAGGAGGGGCGT
TTATTTGAGGGGGCGTTTATTCGAAGTAATACGGTAAGTTTAAAATAAAT
CCAGTTAGGGTTCCAAATTTTTAAGCGATTTTCCTTGTGGCTCGATCCCA
AAGTGAAGATTCTAAATGGAGATGATAATTCAGGATATTGTATATCCACC
GGATCTGTGATACAGATGTGTTTTTCTCTAGAAAGAGGCTCTTTGAGACA
GGAGATGATTGTAACAACAAGAGTGAGATAGTCTGAGGTCAAAAAATATT
TAAAATACACGTCAATTCTAGACAAGAAATATGTGTTTGGGTTTACCCGT
GGGTAGATAGACCTTATCATGAATTACGTCACGATTATCACTTGCCTCGT
ATTCAAACAATTTCCATGGTGATTATATCCCTTGCGACACTAAATGATTT
TTTTTATAAATAGAAAGTAGTTTTGATAAAATCCGCTGGGAGTTAATCAC
CATATGGCAATAATTTCAAAACGAGGTGGACCTTGACGTTATTCTAACCT
TTTAAACTTGAAGGTTTGTGAAGTTGGGGTAAGTAAGGTGTATTTAGATA
CACCCCTTTGTCACAGACCCTGTGGGACTACCTCCCTACTGGAAAAAAAA
AATTCGTCCCAGGTGCTAAAAATACCCTTAAATTTCAGCTACACTGGGAA
AGTTTCATCTCCTTTTGAGATTTAAGGAGCAATAGAATTTCTATCCCCAA
TTGAATTCAATAGAAATTGTCATCCCTACTTGTGGGAAAGAGAGAATATT
TTCCAACAGGGCTGTGAGACAGGGGTATTTAGACTTCTGATTCTGATATT
TATGATGTTCTTCATTGCAAACTTTAGATGGCGGAGGATTTTGAGACTTG
GCGTCGTTCGATTGGCCAACCCGGTTCGTTATGGGATTGCGTCCAACCTT
GTATGGAAAATGAAGGCCGATGGGAAACATGTAGATGGCAATATGAAGAG
TGCAGACAAAGATTTATTGATGGAAAAAGACGACGATAATTCTATTGCTG
TTTTGTTATATGATAGATTCGATAGATTTACTTTTGTTTATATCAATAAT
TAAAAAATAATTTATTTCAGGAAATTGAACGTTAGTTTTCTCACCCAAGA
TGAACTCCTCTACGAATTCATGATATTCATGACGTAATGTTTTCTACGGA
AAGACCCCGGTTTTTGCCAGTAGTGGCAAATTTTATACAACTTTTGCCTA
GTTTGAATTCGTGACTACTTGCTAAAACCGGGGTATTTCCGTAGAAAACA
TTACGTCATGAATAATACGTAATATCATGAATAGTGCCTGTGCACAATGC
ATTCTGTCACTGTATAATGCCCAAAGATGTGAAAACCCACCACATGATCT
CCCCGAAAAGTTACACCAAGATGTGACTTTTCAAAGCCATGACAAGCCCG
CCTGAACCATTTGTCCCTTTTATAGATTTTATAGGATTAGGTTAAATCTG
AGTAAGGCAAAAATATATTTTACTTTTAGCAGAAGTGTCATCTGATGGTC
ATTGGGTGCCTAATAAACGTCCACCCCCTCCCCACTGTTTAAAACTTTTC
GAAAATATTTTTACGAACATTATTGTAGATCGTCATCATACCTTTTACGC
CGGCCCTTTTTTATTACGCCACGGCCTAATTTTGGGCTTACGTCAATTAG
GGCCGTTAATAACGCCAAAATTTGTAAAAATGGCTACTTATGCTTCAAAT
TAGTAAATAATGATGTAATTTTTCAGTAGTAAACTGTTGAAAATTCCATC
GAAAATCAATGATTTTTAAATATATTAAATATTTCAATGTTTTAAATATG
GAGTAAAACAATGGATATAATTTTCGTCTTCGAATCATACCTAAAATCCA
TTAAATTGAGAAATAATGATTAAAAATTAACGCCACTTTTAGGTTAAAAT
TATAAAATCTTGGCCCTTTTTACGCCGGCCTTAATTACGCCACGAGCCAA
AAAATAACGGAAATAAGGGCCGGTGTAAAAAGGGCCGATAAGTTAATCAT
AAAAAACTGAGCTACTGTAAGGGGCTGGGTTCGAGCTTGGTTTATTTCTT
ACAATAAATGTTATAGACTGGGTGTTTAACCGTCAACTGTCCTGATTCGT
TATACATGAAAGACATATCTTGTCTTTGACATACATCCAGCATTTCGACG
ACCAGTGGCTCATAATCCACCGTATGGATACTGGCAGCAATCCAATGAAT
AAAGTCATCCAAAGATTGGATTCCCTGAAACACTAACCTATATTCTTCGC
TTATATCCAAATCACCAAATCCAGCTGTAATTAATAAGTTTTTGATTTCA
TCAACTCCGATGTAATAGAAATTACTGGTTATCTTTTCGTAAACTGACAA
TTGACGTATCACAGTTTTAAAAAAATCAGACCCATTCGAAGGATTTAATA
ACAGCTGACCACCACGTTTCAAACATTTAAAAATACTTTTTAAAGTAGCT
TCTTTTTCAGCAGGTGTCAACCAATGTAATACAAATACCATGATCACCAA
ATCAAAATCATCTCCAAAGTTCGAAGCATCTCTACCAAAAGCCTGGTGAA
ATTCCAAGTTTGATGTATCGCTAAATGCGTCTTTTGCTTTTTCGATTCGT
TCTTTGATAGGATCAATACCAACAACTTTTCCTTTTCCTCCGACCATTTT
TGAAAGTTGAAAAGTATTGTTTCCAGTACCGCAACCAACGTCTAAGATTT
TCCAACCTTTTTTGATTCGAATGTTTTGAATGAGCCCTTCGAAGCCTTTA
ACTTGCATTACTTTGCTAAATGTATGATATATTTCCGATGCATCGTTTGT
TTTTTGACCCGCTGGCATTTTGTTATGAATAATTGTCAATGTTTAACTTT
GAAATTTGGTTCACATATCAGATGTGTTTTCACTAACTCTGACCTACTGG
CT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046803-exon-scaffold_117-1575043694:386422..386533 | TCONS_00046803-exon-scaffold_117-1575043694:386422..386533 | Clytia hemisphaerica | exon |
| TCONS_00046803-exon-scaffold_117-1575043694:382882..384956 | TCONS_00046803-exon-scaffold_117-1575043694:382882..384956 | Clytia hemisphaerica | exon |
| TCONS_00046803-exon-scaffold_117-1510915933:386422..386533 | TCONS_00046803-exon-scaffold_117-1510915933:386422..386533 | Clytia hemisphaerica | exon |
| TCONS_00046803-exon-scaffold_117-1510915933:382882..384956 | TCONS_00046803-exon-scaffold_117-1510915933:382882..384956 | Clytia hemisphaerica | exon |
| TCONS_00046803-exon-scaffold_117-1491911889:386422..386533 | TCONS_00046803-exon-scaffold_117-1491911889:386422..386533 | Clytia hemisphaerica | exon |
| TCONS_00046803-exon-scaffold_117-1491911889:382882..384956 | TCONS_00046803-exon-scaffold_117-1491911889:382882..384956 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_117 | supercontig | scaffold_117:382882..386533 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR029063 | SAM-dependent_MTases |
Blast
The following BLAST results are available for this feature:
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