TCONS_00046697 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046697
Unique NameTCONS_00046697
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length865

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046697 ID=TCONS_00046697|Name=TCONS_00046697|organism=Clytia hemisphaerica|type=transcript|length=865bp
GTGACGGTTCAAATATACATGAAGCAAAAGCATTGATGGAATGGATGAAC
GTCACCAATGTACACATTCGTTTTTCTGGACTGTTCAGAAAGTTTGATTA
CATTGACACTAGATGGCATCATTACGTGGTGAGCACGATATCCATGGTCG
CACGATGTGATTGTAACGGTCATGGTGACGGCTTATCATGTCCGCTCAAC
AAAATTACCGGTAACCGAAAATGCGATTGTCTTGATAACACATGTGGTGA
TCGTTGTGAAAGATGTTGTCCTGCGTTCAATCAGTATCCTTGGAGGAAAG
GTTCGCGGACGTCCTGGATTTCTGATAACACGACTGCTTGTGAACAATGC
AACTGCCACAACCACAGTGACACGTGCCGTTATGATGCTGACGTAGCAAA
AAATGAATTGAGTTTAGACATGAAGGGGCAGTACGCTGGCGGTGGTGTTT
GTCTCAATTGCAGGGACAATACAGAAGGAATAAATTGTgagaaatgtcaa
aaatatttttatcgtCCACCCGGGGTTGACGTAACGTCACTTGGCGCATG
TCCACCATGTAAATGCCATCCTGCCGGAAGCCGAGCGACGGGACAAGGGA
TCAGCTACTTGGAGTGTGTGAGGGATCAAGAAATGGCACTTTTTCATGAT
AGGAATGTTGGTGATTGTTTTTGTCGTTCAAATGTAATAGGTACCAAATG
TGACACCTGTAAAGATGGCTTCTATCGATTGGAATTGAGTAACCCTAATG
GATGCAGGTCTTGTCGATGCTATCTAGCTGGAACATTCCAACGATTGAAT
ATTTGCCATAAGTGTCCATGCAAAGCTAACGTCAAACTTCGTGACTGCTC
TTCCTGCAAAGACGG
Run BLAST on NCBI

transcript from alignment at scaffold_116:232930..241333-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046697 ID=TCONS_00046697|Name=TCONS_00046697|organism=Clytia hemisphaerica|type=transcript|length=8404bp|location=Sequence derived from alignment at scaffold_116:232930..241333- (Clytia hemisphaerica)
GTGACGGTTCAAATATACATGAAGCAAAAGCATTGATGGTATGTTCGTCT
ACCTTCTTTTTTTTTGCTAGGCTGCTGGCATCCACTAACGGATTCGTGCT
CCTTATAGATAGATATATGGTAGATCATTAAACAGACCCAGACTACCTGG
GGTTTTGTAGAGGTCTGCGATCCAGACTACTTTTTTGCTTGAGTAGTGAC
ATTGCTTTGTCGACGCGTGTGTAGTTGTTGTGACCTTTTTAAGGCCTCCT
TTAAGTTGTTTGATATTTTTTAGACCAAAATTGTCGCCTGCGGCTCCAAG
ATTACAAGGAAAACTCTCTGCAACATTTTCTACACTTTTTGTGATCTTTT
TCTCGCTAACTTTGACCTTCCAATGCCTCTTTTTTAAGCTATCTGAGATT
GCTTAAAGCAACAATTTACGCCCGTTGCGCATAAGTTTTCTCCGAAAATT
TCCCCTAAAAAGGTTAAAATTTTTCCAATCTCGCCTCCCGAAACGAAAAC
TCGTGGCTACGCCTCTGCTACACCCATCAATTTCGCCTCAGCGTAACTAA
ATAATTTTCATTTCATTTGTAGGAATGGATGAACGTCACCAATGTACACA
TTCGTTTTTCTGGACTGTTCAGAAAGTTTGATTACATTGACACTAGATGG
GTAAGACCAAAATTCAACTTCACTGCCTTTAATTCGATCTTTAAGAGGCC
AAGAAAATTCTCTGGGTGGTGACGGTTGTCACAACTGACCTTTATTAACC
CTTTATTATCTGCCATATTTGATTTGAGCTTTTTGAAGATGTATCCGCAA
GAAAAAGTGCTAAAGATTATCTAAAGTATTCGACGAAAAGAGATCTTTTG
CTCTAGATGCACCACTATTGAGTTGGGCTACTATGTAGGTACCACTTTCA
AAAACTCCGATCATAGATTTTGGTTAGACGGGATTTATATTATTCTGTAT
AATTATTCGATTCTTACTATAATCCGAACTAGTTATTAGTCCATATCAAG
GAGAAAATAGTGTAAAACTATTTCTATGATTTAATCTCTCTGTAATTCGA
ACAAGTTAGACATACCGTTTGAGTCCGAATAAATTAAAGTCAACTTTTTA
TCAATGTGTTTGAATTATCTTTAGCATCATTACGTGGTGAGCACGATATC
CATGGTCGCACGATGTGATTGTAACGGTCATGGTGACGGCTTATCATGTC
CGCTCAACAAAATTACCGGTAACCGAAAATGCGATTGTCTTGATAACACA
TGTGGTGATCGTTGTGAAAGATGTTGTCCTGCGTTCAATCAGTATCCTTG
GAGGAAAGGTTCGCGGACGTCCTGGATTTCTGATAACACGACTGCTTGTG
AACGTAAGATTAACGATTTTTTCAGTATTTTGCGTTATTTCTTATCAAAC
CCCCTTTTTTAAATGTTAGTACTCTTAATGTGCTAGACTATCTATGTAGT
CGAACTTGCGGCTGATTTCAGAATGCAATAAGCAAGAGAACTTGTTAAAA
GGATTTGTAGATAAGTCGACGACAATCTTTTTAAAAGCTCCGATCGCAGG
TTGAATATAAGACTATTTTAATGCAGATGTCGAAAAACAGCAAGGCCATT
CAGAACGAAATTTTAAATATAATACTAGGCATAGCTTCACTAAATGCCTT
ATCTGGCACCCAGATGGTGAAATTTTCATCCGACACACTAAAGCTCTGAA
GGTCGGGAAAATTTTCAACATCTTTAAGGTTTACATTACGGAATTTTGCG
AGACCGCGTCAATAATTTTGCAGCAGGAGGTCTGGTAACCCAGCCCTCGT
TTTCGGGGATTGGCGGGTCCAACCGAAATATTATTAGGTTTACGGGCAAG
GGCTGTTGAACCCGACTGAGGATGCGGCACATCAAAGGCCGACTATCATT
CCTCTCCGATGGGAAATTGGCCCGCTCCCTTTAGAGCTTTAGCGTGGGCG
GCCGCCAATCCACCATCGGAAATATCAGATAACTAAACGCCCCTTCTATA
TAACTACTATAACATGAAAAACAGTCAATAACAATTCATAATACAGTAAC
ATTCATCTCAAAAGCATTTTCCTTGAAAAATATTATACAGCTCTTCCGGA
AAAAAACACTTTGTATGATATAACTTCCCCGGACAGTACCGAACAATCCC
GGAAGAGGGTAGGTGCTTAAAAGACGATAAACAAACACAATAGAAAAAAT
TCGAGATGCCAATCCAATATTATCCAAAACCAATCCAAACTTATTTTCTC
TTCTTTTCCCAGAATGCAACTGCCACAACCACAGTGACACGTGCCGTTAT
GATGCTGACGTAGCAAAAAATGAATTGAGTTTAGACATGAAGGGGCAGTA
CGCTGGCGGTGGTGTTTGTCTCAATTGCAGGGTAAAAATCNGATGCTGAC
GTAGCAAAAAATAAATTGAGTTTAGACATGAAGGGGCAGTACGCTGGCGG
TGGTGTTTGTCTCAATTGCAGGGTAAAAATCTTTTTCATTCTCATGAAAT
AACTTAATTTGTCCAGGGATAACATAAGAAGTTGATTTCAACATCTTTTC
CAAAACCCAAAATCTATTGGAAAATTTATTTTGAGAAATGAACTAGAGTA
TGTCAAAATTTAACTGTGAATGATATTCGATGGCACAGAATAGCGTACTA
CAATTTGTCACATTTTTGATATTATGGAAATTTATTTCCTGGTTTATAAA
AAACTCTGACAGCTTAATGCTGGTCGATTGGTTAAGGTGCAACTCCTGAC
CGATCGGCTATGGATGGCTATCAATATCCTTTGGACCTTTGGATACACAG
CTGGCACACAACGTTGTTTCAACGTTCATCTAACGTTATATGGATGTTGT
GAACGTTATATAAACGTCGAAACAACGTTGTGTGCCAGCTGGATACGTTC
GTTTTTGGCAAGGCTTTTTTAACTTCAAAACTTTTTTTCATTCGCAGGAC
AATACAGAAGGAATAAATTGTGAGAAATGTCAAAAATATTTTTATCGTCC
ACCCGGGGTTGACGTAACGTCACTTGGCGCATGTCCACCATGTAAATGCC
ATCCTGCCGGAAGCCGAGCGACGGGACAAGGGATCAGCTACTTGGAGTGT
GTGAGGGATCAAGAAATGGCACTTTTTCATGATAGGGTTAGTACTTGACT
ATTATTCAGTTAAGTTTAATTAGTACTTTTTTCAAATTAGCTGCAGCAAT
CATATTTCCCATAATTACTTGAGAGGGAAATACAGGCTGGTAAAAATTCC
CTCGGGTCAAATCTGGTCAAATTTCAATCGGGAAAAAATTCGTCACTTTT
GTGAATTATAAAAAGTATTTTGAGAGGGTTTCTCCTTGACGGGAACTGGA
AACAAGTTTGAAGATTCGAATAATAGAAGTTCGAATAAGCGAGAGTTTAC
TGTACAAACAAAAACCACTTTTTGGCCACGGTTAATTGGGGAAAAACTCT
TTTCTTTTAGAATGTTGGTGATTGTTTTTGTCGTTCAAATGTAATAGGTA
CCAAATGTGACACCTGTAAAGATGGCTTCTATCGATTGGAATTGAGTAAC
CCTAATGGATGCAGGTGTAAGTAGCTTAGCTTCAACCCTTTTAATTGTAT
GAGATTTGTTATAAGTTTAAGTTATACCAACCCAAGTTTTGTAAAAAGAG
GGACTCGCTAACCGCCCAACCCGCCCAACGGGAAAGATGGGATCAAGAAT
AAATAAAAGACTAAAATTTTGTCTCTGTTTGTAAAGTCGACTTGCTTTTG
TATCCCACTTGTTTAACTTAGTTTTAAAGAAGACGTGTTTTCCTAGTTGT
AAATACAAGTTGTATGCTGGGAGGAGTTCCCTTATTTTAATTTCCTTCTG
GTATAGTGAAAGATTAAGTTTCTCTTTGATTTTACTGCATCTCAAACCTT
ATTTTATGTTCTTTTATATATAGCTTGTCGATGCTATCTAGCTGGAACAT
TCCAACGATTGAATATTTGCCATAAGGTGAGTGATTGTTGAAATTTTGAT
GTTGAATGCACCCTAATTGTACGTGGTCCAAAATGATTTTGTTGATGTCC
AATAGACTGAAAAATCACTTTGATTCACTCTGGATGATGAGTGTAAGCTA
TAGCAAGATTCACACTTTCATTCAGAAATGGTTTTAAAAGCCTTGGGTAT
TTCAAATTTTTAGAGAATATTTTAAAGGAGCTACTTTTTGAATACAAGTT
CTCTGCATGGTTGGATCCATGGTTGGATCGAATTTCTTGATACGGAAGGA
GCTTTTAAAATTCCTCGAACTTTTGGTGATATTACTTAACCAACCAAGCC
TATATATCGAAAGATTCCGATCAAAATAATTACTGCATTTATCATGGCAT
TCCTATACTTCCAAATTATCTCTTCGTAATCAGCTTTTCTTTTTCAAAGC
ACGCGTCCTTAATGTTTTTGCCATCCTCCGTTGTAGGATATTCTTTCTCT
GAGGTGGTCTCAAACCTTCATCTATCAAAATCTTTTGATAACCATACTGC
TGACCTAGTTTCTTCCGAAAATATGTCAGATATTCGACTTCAGTTTTCAG
TAGTTTTTTACACAAATACCGATGGTAGGGTACCACTTTCGGATTCATGA
CATACTTTTGTACATTAACATTAATTTTGAAGCCTTTAACGGTCATTACC
CCCGGATCGCAGACATGTTCAATCTCATTTCTCAATCGTTGAAAGTCTTT
CAAATCATTCCAGAAACGTTGACCGTAAGATTCGACTTTTTGCCAGAAAG
TTTGATTGAAATGATGATATAACATTGAATCTGCATGGTTCCATTGTAAA
ATTCTTTCTCTCAAATCTTCTGTTAAATTTGATCGTTTTGTCCTTTGATT
CTGTTTAATATATAATATATCTTCTAACTCCCAGCAAAATTCTAATTTCA
ATAACACTAGACTCTCGTCGAAATACTCCATAATCATCACTAGCCTGAAC
TCCGTCTCCATATTTTTAATACGCTTTTTAATCGCATCATCGTCTCCTAA
GTCTAAGAAATCTTGTCCTAAATCGTAGAACATTCCACTTTGGATTAAAT
TGATTGTTTCTGGTAGGTCATTCAAAACAAGAGTGATATTGTATAAATAT
TCGTCCGGAAATTCCATAAATGCCCGGACAGGGTCTTTGCGATGACGTAA
TTGTAGAATTCGATCAAATTCGAAATAGAAGAATGAACTTTCGAATTGTG
TGGCTGGATTACGTAATATGGTGATGTAATCGGTATCATCCGCCATTATT
AAATCCATCTGTTCCCGATTGTACCTAAAAACGGGAAAATAAGTTAGTTA
TGGACTTCCAGTTTGTAATCGGGCGGGGTTGGATACAGGAGGTAGGCTAT
CTTATTCATGGAGAGTAATTAGTTTCCATATAAGGTAATACGATAAAAAA
GTGCACTCTCCTCCATTGGTTATAGCCTCCCTCTGTATCCGAGCCTGTCG
GGTTCAGAGCCGTCCAATAAAAAGTATATTTCTGCGAATATTGTGGTATT
TGGTAAATTCACTGTTCTTTCGGTAAAAGGAAACTTTGCCAAAATTAAAT
CACAACTTTGAGGGTTTCCAGAAGAAAATAGACCGTTTCATAAATTACGT
CACGAACATCACTTGCCTCGTTTTGAAATTATTTCCATGGTATTGGGCTT
TTCCAGAAAAGGGGGTATAGCCCATTATCTCCCAGCGGGTTTTATTACAA
CTATTTCCTATTCATAAAAGAATCATTCAATGTCTCATTATGTTCATAAT
CACTATGGTGATTGTTTCAAAACGAGGCAAATGATGTTCGTGACGTAGTT
TTTATGAAAAGGTTTAATAACCAGAATATCTGGGAGGGGCCTTATTGCGT
TTTCTTGGTATCCTAAAACAGTGTTGTTAGTTTTCTTGAAATTGCACCAC
TTTTTGGTTTTACTGTTTGACGTGACCGTTGTTACCAGAATCATAAAAAA
GTGAACGAAGAGACAAAAGTTGGAGTTTCATTTGATTGTTGAAAAGCGTG
AGGAAGTCGACTGTATACGCATTAAAAAGCGAAAGACCCAACAGCTGACT
GGTTAAAAGTGATGTATTAACTGCTGATTCTACGTTATTTACAACCAAAG
TTCAGTTTTTTGGTCCGTGATGTAATGTCAGAAGATGCATATCATGAATA
CTTTTTCCTAATTCAAAGAAATTTCATTGATTCTTGAAAAGTGTGTTAGA
GTAAGAGAAAGTCGACTGTATGACGAGTTAAAAAGTCAAATTTACCTTGC
ATGATTGCATAAGATATTTCCTGGTTGTCCATCCAACCGCAGCAGATCGA
CATTTGACCAATGGAACATTCTTGGCCAGGAGAATCTCATTTGATCGGCC
ATTGGAAGGACCATATTGAGATCACGGAGATCACCATATCTGTTGAGGAT
GTTGGTGACTGTTGTGCTCCCTGTTTTGTGAGTCTTAATGAAGACTATGT
TTTGACGTGGTTTGCATGCTCTGTAGAAAGATATATAAAAATGAGGTTTT
TTTAGACGCGACTTTCTTCCCTTGTCTTTCCACACTTTTAACCAAAATAG
AGAAAAAAACTCGACCTTGATATGTTCGAATTGGATTGTCGCCGTTGCCT
CTATCTTCTATGTCGTCTCTCAAATTGAACTTATGTAAACCAGAAAGTCA
GCCGTTGAAAAGGTTTAACTATTCTGAGAAAAGGTAGCACGGTTCAATGA
CAAGACCATTGATATACAATTTAACGGGGCATTCGGAAAAATTCTCAAAA
TGGTTTGGAGCAGCGTTTTAGCATGCCTAGCTACCAATTCGAGCATTCTG
GAGGAGTTTTACCCTGCACGTTTTTTTATAAGAACAAACTATATAAGAAC
ATTTTAAGGCTTTAGAGACTGGACACAAATTTAAAAAAACGGTGAAGATA
AGAACAGATTCTCAAAAAGTTAAGAACATCCAAAGACTTCAAAAATTCTG
CATGTTAAAAAAAAAACGTGTAAATTTGTATTTGCCTTTTGTATTTTTGT
TTGAAAGCTGAAAAAATTCAGTTAAAAATATTTCTCTAAAACGCTCCTGT
TACCTCTGAGTGAAGTTCCCTTCCTCCTGAAGCAGCTTCAATGGCTTCAA
TGGTTTCTTCGATATTTCCCATCTGTCAACCATATCCTTGACATCTCCAA
ACTCTTCATCATTTTCAACATTTGTTATTCGTTTACTTCTATAACGCTGT
TGAACATCGTTTTTATCTCCATAATAATACATGATATATGAAACAAAGAC
CAGTGTAACCACCAAGGCTATTATAAAATAGCGCATAATAATAAAGCTGT
AAGATCCTGCATTAGTTAGTCCATTCTCTCCAACTATGAAAACCATGAGG
TATCAAAAACCTTTGTCTTTTTTTTCATCTATATAAATCTTTATTAAGAT
TCAAATTTGCATCTGTTTTATAGATACAATCATGCCGAATTCTTCATCTT
TTTCTTGTTGCTAGGCAACTATTGTTTAAACAATGCTTAAAATATTTAAG
TAAACAAAACAAACAAATTAATCAGCAAGAAGACCAGGAAGTCAGTCCAG
TAGTTAACTGGCACAAGTTGTAGAAATTATTTTGTGCTAAAGATCTGAAA
GTCATATTGTTTCTAATATCTGAAAAATATGGATTACGGTATTCCCACCA
GACCATGCACTGACTTTGAAACGGAACCCCCAGCCCTCGTTTTCAGGGAT
TAGTGGTCCCAACCGCGGAAATATTTTCAGGCAAAAAGGGATGAAATCAG
GGAAGCGACACATCCTAGGCTGTGATTATCATTGCTTTCCGATGGGATAT
TGGCCCATTCCTTTAGAATTTAGCGTGGGCGGCCGCCAATCCGCCTTTGA
GAAATCAAATGAAGTAATCAATAGCTTGGTCATAACAACGTCTATCTGAC
ATCCGCGACATATATAGAACGTTAGATGATAGACGTTGAAGCGATGTTGT
TTTAAGCCTTGTCTAAGCATCTTTCTTGCTCAAGGATGACAACACGTTCA
TCACGGCCATCGCAACTCCTTGTTCAAGTCGACGATATAACTGAAAGCTG
AAGGATGAAATTTTCTTGCCTCCCTCCTTCCTTGCAGTTATCGCTGTAGG
TTGTATTGTATTTATCGTGACAAATTTTCCCCAAAATTATTATTCGAGGA
TTAGCCATAATTTTTCGCCAAACTTATATCTACCGAATCACACTTATTTC
TCAGCCGTCTGAATACTTGATTGGTTATTACACCTAATCTAGGTCATAGG
CGAATGGAAAATTAAAGTTCTTGTATTATTTCCAATTTAAAACGCTTCAC
ACGATTTTGGCTTGAAACAATTAATTGTTTTTGTAGGATTTCTTTGGTCA
GTGTCCATGCAAAGCTAACGTCAAACTTCGTGACTGCTCTTCCTGCAAAG
ACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029794XLOC_029794Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046697-exon-scaffold_116-1575043694:241296..241333TCONS_00046697-exon-scaffold_116-1575043694:241296..241333Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1575043694:240684..240761TCONS_00046697-exon-scaffold_116-1575043694:240684..240761Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1575043694:239981..240209TCONS_00046697-exon-scaffold_116-1575043694:239981..240209Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1575043694:238953..239071TCONS_00046697-exon-scaffold_116-1575043694:238953..239071Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1575043694:238198..238386TCONS_00046697-exon-scaffold_116-1575043694:238198..238386Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1575043694:237768..237873TCONS_00046697-exon-scaffold_116-1575043694:237768..237873Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1575043694:237358..237410TCONS_00046697-exon-scaffold_116-1575043694:237358..237410Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1575043694:232930..232982TCONS_00046697-exon-scaffold_116-1575043694:232930..232982Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1510915933:241296..241333TCONS_00046697-exon-scaffold_116-1510915933:241296..241333Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1510915933:240684..240761TCONS_00046697-exon-scaffold_116-1510915933:240684..240761Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1510915933:239981..240209TCONS_00046697-exon-scaffold_116-1510915933:239981..240209Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1510915933:238953..239071TCONS_00046697-exon-scaffold_116-1510915933:238953..239071Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1510915933:238198..238386TCONS_00046697-exon-scaffold_116-1510915933:238198..238386Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1510915933:237768..237873TCONS_00046697-exon-scaffold_116-1510915933:237768..237873Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1510915933:237358..237410TCONS_00046697-exon-scaffold_116-1510915933:237358..237410Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1510915933:232930..232982TCONS_00046697-exon-scaffold_116-1510915933:232930..232982Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1491911889:241296..241333TCONS_00046697-exon-scaffold_116-1491911889:241296..241333Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1491911889:240684..240761TCONS_00046697-exon-scaffold_116-1491911889:240684..240761Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1491911889:239981..240209TCONS_00046697-exon-scaffold_116-1491911889:239981..240209Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1491911889:238953..239071TCONS_00046697-exon-scaffold_116-1491911889:238953..239071Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1491911889:238198..238386TCONS_00046697-exon-scaffold_116-1491911889:238198..238386Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1491911889:237768..237873TCONS_00046697-exon-scaffold_116-1491911889:237768..237873Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1491911889:237358..237410TCONS_00046697-exon-scaffold_116-1491911889:237358..237410Clytia hemisphaericaexon
TCONS_00046697-exon-scaffold_116-1491911889:232930..232982TCONS_00046697-exon-scaffold_116-1491911889:232930..232982Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:232930..241333 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.356985	0	0	0.132658	0	0	0	0	0	0.552592	0	0.165045	0	0.564833	0	0	0	0
Blast
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BLAST of TCONS_00046697 vs. Swiss-Prot (Human)
Match: LAMA2 (Laminin subunit alpha-2 OS=Homo sapiens GN=LAMA2 PE=1 SV=4)

HSP 1 Score: 177.563 bits (449), Expect = 5.561e-49
Identity = 108/290 (37.24%), Postives = 148/290 (51.03%), Query Frame = 3 
Query:   33 LMEWMNVTNVHIRFSGLF--------------RKFDYIDTRWHHYVVSTISMVARCDCNGHGDGLSCPLNKITGNRKCDCLDNTCGDRCERCCPAFNQYPWRKGSRTSWISDNTTACEQCNCHNHSDTCRYDADVAKNELSLDMKGQYAGGGVCLNCRDNTEGINCEKCQKYFYRPPGVDVTSLGACPPCKCHPAGSRATGQGISYLECVRDQEMALFHDRNVGDCFCRSNVIGTKCDTCKDGFYRLELSNPNGCRSCRCYLAGTFQRLNICHKCPCKANVKLRDCSSCK 860
            L+E+ +   + +RF  +               R+ D I TR ++Y V  IS+   C C GH    +CPL+  T   +C+C  NTCGD C++CCP F+Q PWR G+  +      T CE CNCH  ++ C YD +VA+  LSL+++G+Y GGGVC+NC  NT GINCE C   F+RP GV       C PC C P GS           CV+D++ A       G C C++   G  CD C  G+     +    C++C C   G+         C CK NV+  DCS CK
Sbjct:  232 LLEFTSARYIRLRFQRIRTLNADLMMFAHKDPREIDPIVTRRYYYSVKDISVGGMCICYGHAR--ACPLDPATNKSRCECEHNTCGDSCDQCCPGFHQKPWRAGTFLT-----KTECEACNCHGKAEECYYDENVARRNLSLNIRGKYIGGGVCINCTQNTAGINCETCTDGFFRPKGVSPNYPRPCQPCHCDPIGSLNE-------VCVKDEKHAR-RGLAPGSCHCKTGFGGVSCDRCARGY-----TGYPDCKACNCSGLGSKNEDPCFGPCICKENVEGGDCSRCK 501
The following BLAST results are available for this feature:
BLAST of TCONS_00046697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LAMA25.561e-4937.24Laminin subunit alpha-2 OS=Homo sapiens GN=LAMA2 P... [more]
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