TCONS_00046676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046676
Unique NameTCONS_00046676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046676 ID=TCONS_00046676|Name=TCONS_00046676|organism=Clytia hemisphaerica|type=transcript|length=341bp
AAAAGTTTCTGATGTGGAATAAGAAATGGCGTTCTAAAGAGTTAAATATG
TACGGAAACTTTGAGGAACGCCATGGATtcaaatgaaagtaaaaatattG
ATGCTGACATCGAGAATAAAAGTACGGAAGGAATTGAATTTGAAACTTTA
GTACCATTAGCATCGTCGAGcaaaaaacgaaaacaaaaaaacgGAAAAAC
CCGCAAACACTCTTTGGCTTTATGGAATTCTACATCACATAAACAAGCAG
TCAGAAATCGAAGTCTTTCTCTTGATTCTAAAAGGTTACAAGAAGCATGG
ACCGAGATTAATGGACGATTACGTAATAATCTAGAAACANN
Run BLAST on NCBI

transcript from alignment at scaffold_116:794104..795036+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046676 ID=TCONS_00046676|Name=TCONS_00046676|organism=Clytia hemisphaerica|type=transcript|length=933bp|location=Sequence derived from alignment at scaffold_116:794104..795036+ (Clytia hemisphaerica)
AAAAGTTTCTGATGTGGAATAAGAAATGGCGTTCTAAAGAGTTAAATATG
TACGGAAACTTTGAGGAACGCCATGGATtcaaatgaaagtaaaaatattG
ATGCTGACATCGAGAATAAAAGTACGGAAGGAATTGAATTTGAAACTTTA
GTACCATTAGCATCGTCGAGGTAAATGATCCATTTTCCATAAGGTACTGT
ATAAGATCGTGTTAGTAGCGAGTTTGTGTTTTTCAGTGACGGAAAAGTTA
TTTCATTTGTCTAGATCTTGACTGACTGAGGACTCACGATACATCATGAA
ATTTGAAAGATCCATAAGCTTAGAAAGTATTATTTCTTTCCGATTCATCT
TACattcggaagagagaattatccgatattccgatggcggattgacAGCT
GCCAACGCTTAAGTTCTAAAGTTTTCCTGCCATATCAATGACAAATTGAC
GACCACACCTTTAAAAGAGCGGATCAATTTCCCATCAGAAaagaatgata
gtcggcctttgatgtgccacatacccagtcgggttcaactctCCCTCCTT
GTAAACCTGAGGGCTAgggttaactttttgagtgtaaagcctaaaaatat
tcttaacatgttcttacttttgccatttttttttgagtccgcaaagcctt
caAATGGTCTTCaattgttcttagtattttggccatGGCTTTATGTTctt
tatgtagtttgttcttacaaaaaaacgtgtattctagataatttttttat
ttgaattttcagcaaaaaacgaaaacaaaaaaacgGAAAAACCCGCAAAC
ACTCTTTGGCTTTATGGAATTCTACATCACATAAACAAGCAGTCAGAAAT
CGAAGTCTTTCTCTTGATTCTAAAAGGTTACAAGAAGCATGGACCGAGAT
TAATGGACGATTACGTAATAATCTAGAAACANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029788XLOC_029788Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046676-exon-scaffold_116-1491911889:794104..794273TCONS_00046676-exon-scaffold_116-1491911889:794104..794273Clytia hemisphaericaexon
TCONS_00046676-exon-scaffold_116-1510915933:794104..794273TCONS_00046676-exon-scaffold_116-1510915933:794104..794273Clytia hemisphaericaexon
TCONS_00046676-exon-scaffold_116-1575043694:794104..794273TCONS_00046676-exon-scaffold_116-1575043694:794104..794273Clytia hemisphaericaexon
TCONS_00046676-exon-scaffold_116-1491911889:794866..795036TCONS_00046676-exon-scaffold_116-1491911889:794866..795036Clytia hemisphaericaexon
TCONS_00046676-exon-scaffold_116-1510915933:794866..795036TCONS_00046676-exon-scaffold_116-1510915933:794866..795036Clytia hemisphaericaexon
TCONS_00046676-exon-scaffold_116-1575043694:794866..795036TCONS_00046676-exon-scaffold_116-1575043694:794866..795036Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:794104..795036 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.262092	0.304314	0	0	0.286413	1.03664	0.64699	0.226487	0.56108	0.816897	0	1.7875	0.742534	1.67878	1.80158	0.605292	1.65441	0.285708	2.69075	1.55917	1.14076	0	1.40084	26.2595	9.5289	0	0	0.298313	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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