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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046640 ID=TCONS_00046640|Name=TCONS_00046640|organism=Clytia hemisphaerica|type=transcript|length=374bp
ttgctcGGTCTTTTCGCTTTGATGGTGGATTTTAGTCACGAAAGAGACTT
TACAGCATACAGGAGTCTCAAGTTAGCTCACAACACAAACAAATTGTTGC
TCACATATTGGTTTGCTCAGTCGGTGAAGATTGCAAGACTCTCAATCGAA
ATTACATCAAGCTTGTTCCAAAGAGAAGTACCAACGCTGGTTATGGCGTT
TTTTACGACCATTCATCAGGACGATGGTTTTTCATTGGATTCGTGGTGGA
CAGAGCAAATCCACAAGGTGAAATTGTTGTTTACTCTGGAGTTGTAGACG
GAACAGAACCTGACGGGACAACTATACACTGCGATCAAGAATCATTTGTA
AAGCTCAGAATTATGTTGCCACCT Run BLAST on NCBI transcript from alignment at scaffold_116:264752..274553+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046640 ID=TCONS_00046640|Name=TCONS_00046640|organism=Clytia hemisphaerica|type=transcript|length=9802bp|location=Sequence derived from alignment at scaffold_116:264752..274553+ (Clytia hemisphaerica)
ttgctcGGTCTTTTCGCTTTGATGGTGGATTTTAGTCACGAAAGAGACTT
TACAGCATACAGGAGTCTCAAGTTAGCTCACAACACAAACAAATTGTTGC
TCACATATTGGTTTGCTCAGTCGGTGAAGATTGCAAGACTCTCAATCGAA
ATTACATCAAGCTTGTTCCAAAGAGAAGTACCAACGCTGGTTATGGCGTT
TTTTACGACCATTCATCAGGACGATGGTTTTTCATTGGATTCGTGGTGGA
CAGAGCAAATCCACAAGGTGAAATTGTTGTTTACTCTGGATTTGTAGACG
GAACGGAACCTGACGGGACAACTATATACTGCGATCAAGAATCATTTGTA
AAACTCAGAATTATGTTGCCACCTATAGTTAATAACTCTCGGCGCTGCAG
AAAGTGCGGAACTTTTCGCATATGTAGATTGGTGGCAAAGACGTTGGTCA
TTATATCACATTCGAGTAACGATTGCTGCACCTTCAAGTCATCAATCTTA
GATCTTGTatgtttcaatgaaaatgaaatatttcattTAAAACGGATTTC
TATAAAGCATACTTTTGTGTTCCCTTCTCTTTTTCTCGATGATATCGATG
CTTCCATTGTTTACTTATGTGTTCCAGAAGAGGAGACATAGTAAAATGCT
ACCGTCGTCAGGTCATAGTAAAGAAACTGTTAGGCTACATTTAAATGTGA
TTGATTTCTCTGGAAATTATTTAAGAAATGAAACTTTAGATGTAGATAAT
GTCTTAAGTATTCTTCATATCAGGAAGTCATTTTTTCTGACACATTCCTT
TTCCTATGGACAACATTCATTTCTTGAAAACTTTCAGTATTACTCTTTCT
GGGATAACCGTGTTAAAAACAATCACTTTGCCAACATTAAATTTAGTGAT
TAGAAGCAGTTTGAAAAGCTCGATGCATGTAGTGAGCTATTTTAACCAAG
CATTAGTGTGTACTATTGTTCGAGTTGAAGGATTCTTGGCAGAAAAACCC
TCTGCAGTTTGGTCTCATACCCTTACAAcaggagaacaaaaggttttata
cagaagttctgaaaatgaacatattcatcattttgatttgaattgggATT
TGAGTGAAATTGCAGTTTGGACTTCAAATGTTGGTAAACGAGAGATTCAC
CTGAAGATTGTGAGACTTCCATTTCATGATATCACTTTGAAGCATTTTGC
AAGAATGGCTTGTTTGAGGTCCTTTGGGGAGGAATATTTAAACGGGCGAC
TTCcagtttgtttacaaagatATCTTGGAATTTCTGAATAatgattatga
aattgttttatCTCTTTataatctttaaactttatAATCTATAATTTTTT
GAGGATCGAAAAATAAATTATGAAGAATTTGAGAAACATTTTAAGTCCAG
GGGGCGATTTCGagaatctgaccatattttaccgaaaatggtcaaaattt
acgTGTAaaatgtacgtaaaattttacttaagaccttgaagggTGAGGAA
TTCCCCTAAGCTTAAGTAGTGtttaaggccttatgtagagtttgcttacg
ttcaaaaagttttgaacggaaggaaaatccacgtaagaccctcttaacca
acaaaaactctacataatgtcgaggaaattccccaaaaaaggccttacga
acgattttccgtgaagtaaaagtaaaattttacgtgcatgtggaAAAAGC
TTAAGGATCGATTCCTCGCTCAAATTTgactaaattttctctgcactgta
agggtctgattttaaaggcctaattttgggccgcattTTGGTTCCAAcga
gacctgtgttcttttcgctTTTACAAATGCCGAATTCCCCAAATTTATTC
GAGGAGATTAAAATGTGACGTTTCCATAATTTTAACAtccaaattaatta
tttttctacCATATTGAACATAGTTGGCCTAgacacaaaaataaaattac
gCACAAATACAAGCGACTTTTTATAACGTTTTAAGGCCAATCCAGGCTAC
ATGTAAACAAAATTGAAACCAAAACACTGTTATTAATTGGTTTGCATCTT
CACAAAATGAACTCAAGACAGTCAAGAAGACCTACAGGTCAGTACGACTA
TGGAGACGATTCCAGTCAAGATACCCAAACCTTCGAAACCATTGATGAAA
TGGAAATGAGCCTGGGGATGGGTATCTACCCTGAGAAAGTTGTTGATGGG
TACAGTGATGAAGGCAGAAGCGATTGGAGCCAAACCAattacacacccct
gtctcagtaacccaTTAGGTCCTAAAAGTTCACCGGGGTGACTTTCAAAT
GAGAAATATCCCCGGGGTAGAGATTTCAGTCGCTGGGTTAAGAAAATAGG
TATTTTTTTAATACCGGGCAAAGTCAAAAGTCAAGATTTTTCCCTGGGTT
TGTGCTATTTATAGCACTTTAGAAAAATCAGATTTCGTCGGGGTTTTTGA
TAAAGTTCTCGTTTTTTTCGTGGGTTGAGATTTCCATTGTTCTTCACTCG
ATTTTTACACCGGGTTATCGACCGGGGCGAATTTGACtgggtcactgata
caggggtgttattaCCAGCCAGCCTTCAAGccgaatgaaaaaaaaaacag
tttgaaaatggtGATTAAAGCTCCACCTTCAGATCCTAATGGATAACAGA
AAAAACGCATAAGAAAAGCAAACAACAAACAGAAACAAAGGAAAATGACG
AGCCACCAGctaagaaacaaaagaaaaaggaggaaaaggaaTCCTATTTC
TTTTTAGATGCTGCTACCCATTCCCTTCTGGAGGCATACAAAAATTACAC
CTCTTTGATGACTTCTGGAAAGTACAGAAGAAAAACAGGTAagtgctttt
ttttataatagctATAGTTTTGAGAATTCAATATATTTGCCTATTACCAA
TCGCAGAGGGCTGAAAGATCTTCAACTTCTTGGCAAAAGGCTTGTAGTGC
GCAAATCCCGCGCAAATTCAAATCCTGCTAAAATTTGATAATTCCTGctt
ttaaattccaaaaatctgcttatctttattttttgctttaaaacttATAT
TTTGTCAGTTTTTCCTAGGCtatgtaaaacaaaaaaaaaacaattggagt
aaaaagtcaaaatgctgtAATAGTAGAATCCCCAAAAGGAGTATCATCGG
TGTTTCTACTCAATGAATGATTattgattttataatttttcttccGATTT
GGCAGAAGATAGCTCAAGACCCGAGGTGTAAACTTGTTGACGATCAGGCA
ATGAAGGATAAATTAATTGACAAGttataaatgaatttattttttgttcg
tTCGGCGCTGTTTAGTCACGTGATACGATGTATAAGGGCGGTAGGATTTT
GAGAATATTCACACGTCGATAGATGAGCTTAGACTCCCTCCCACCCACCC
TTACATATTTCTATTTTACGGTTATTATAACATAGTTGTTGTTACTGATT
ATTTTACGGTTATTGTGTACCGAGTACTACTTTGTACGATTTTTATAACA
TAGTCGTTGTTATTAACTATTTACTTACAAATGAGATTTGTAACTTATTA
TGCCGCACTATAGAGGCTTTTCTAGACTTCTACTAAAGTATAAGTGGATA
AGAAGAAGAAGTAAAATAATTAATAAAGTTATTTTCGATTGAGTTtacga
attagaaaataaatttttttttgagtagCATTATTTAACCGTCAATAGGG
GTTTTCATAACAcaggaattttattttgaaatagtcTGTGATTTTTTAGT
TAATTAACCTATCATAGGTATGAGAAGATGCAATTTTTCAATGATTCTGA
TCTGCAATTTGTGAAGTTAAGATGTAAACAATTCATAACTAGAAAAATTT
CCCCTATTGACGGtaacttttcttttctcttcattTTTGCCTTTCATTTT
TATGGGTAATGCTCTCCTTTCGGTTTTGGGTTTagtattttgtttgtttg
gttCTGTAGAATGACTGTTGTCGTTCTATTGCAGTGCTAGGTGTTGAAAG
tgatgtacaaatttgccatgaagctatgatcttttgacattgaaattgtg
gatttggcaaagttggtgagtatggcaaattttgtagtcaatcgaattgg
ctcaAAGTTGATCATGGATCATTCACTCCGTTAATATTTTCNACAACGAA
CGAATTATCAAAGTTGATCATGGATCATTCACTCCGTTAATATTTTCCAT
GAATGGTGGAATGGGTGTAGAGGCTGAGCACTTCTTTGGAGCGTTAGCTT
ATCTACTACTAGTAGCGGATAAGACTGCTCATACttctcaaacaaaaaaa
ttggattCGAACTAAAATTTCGTTTGCACTAACGAGATCAGTCTTAACAT
GTATTCGCGGTACACGAACACTAAAACCAAACCTTaggtttgatgaaatt
gatttgttaaacaacaatattttgaaaacatcttAGCTTTTCATCTCACA
GTTCTGGCTTTTAGTTTTTTTCACCGTATTTTCCATTGCTTTTACTTATG
CTTTTGGGGCTTGCATGACCCGCTAGGTTGTGCGATTTCGACAGGATTGC
GATTCAGGTTTCactatatttatttttatttgtgtcttgatttcaatttt
ttatctaaCATTGAATTCTAAACGAGAAAAAACGTATGTACGGAGAACGC
GTTCGACAATATGAAAATGGAGCGTTCAAATACCAATCGTTTTCGCGGCT
AACGGTGCAATGGGCGTGGAATGCATTCGtttctatcaaaaattatcaga
gTTGTTGGCCAACAAACGAAAAGTTCCTCAGTCAATCGTGACAAATAAAT
TGAGAAAACTGATTTGCTTTTCACTTTTCAGTTTCTTGTCGTTCTGGCCT
TTTCTGGTCTTCTTTCTTGTGTGGcccactttttgtttttttccccTTAG
CTGGCATCTGTTTTGgttccattttcatttttgatataGTGTATATAGAA
CAAAAAACAGTACGAGTGttgtgcgcagatatgtaatttctgcgctatgt
aatttcgagctgcgcagatatgtaattaaatttctgcgcagatatttaaa
acacgatctttaaaatcaatggtacaggggggggtccatgtacaaaaaag
cggcatgtatcatggggtgggtaggtgttttcaaaatttttttgctgttt
agtatacttgtactatacagggggtgtcagggtcaaatttcggattttct
gcttagtatttgtgtactaaaaagccaaaatcaaatcaaattgtgattta
ttttaGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNttttgtacattttgtactataggggtgggtgggtgtttaaaatcga
aatttgctacaaagtactgatacatgccgctgttttgtacatggaccccc
ccccctgaatggTACCCAATTGATAGCTTTTACCAttacttttacctttt
ttactttttattttggtacAGTATTTTATCTAATTCCTATCAAATACAAT
AAGTAATATCttattataagcatcaactATTATAAGAATCAtcgttataa
gaaaatgatctataacttttcaaccactaagtttaagctttcggtgattg
gtgctttcaaagtaaacaagggatagcgcctaaaatgaaaataattattt
ttcttatatatgcatcatctttataagaaataaatcaataactcttgata
gacggtgatatacctttttgtacttagtttttacaaagtaaacaaagaac
gGCACAAAGtgtgaacatatttatttttcttgtaagcattaactttataa
gaatcaaagcaataactcttgatagagggtaatatatctttcggttatta
gtttttgcaagtaaacaagggataacgcataatatgagcatatttatttt
tcttataagcatcagctttataagaattaaatcaataactcttgatagac
gatatacctttcggtaattagattttacaaagtaaacaagggcgGCGCAT
AATACGAGCATATTAATTTTTCCTATAAACAActactttatgagaatcaa
ataACTTTTTGCAGAATAgtatatacctttcggtaattaccgTATTCATT
CGAATACACGCTCCTTCTCTGAGGAAAAAGACTCCCCTCAATGGGagttt
ttaaattctttaattaAGACCCCTTTCTTTACACCCCTCGAATAAGCACC
CCTCCTGAAAGTCTTAAGATTAAAAAGACGCCCAGGACGTTTATGTTCGA
AGAAATACAATAATTTTTACAAAGTTAACAAGGGagagcatgttaagaat
atgaaaaacctcaaaaaataaTAGtatccaaaatcttttttaaaatgtGA
ACCCATCTAGCAAGGTAAGCTCAAGATTCAGATTTTCTATTTATCTTATC
GGTACAACCtaataaaaaaatacaatataatGAGATCTTCAATAGAACTT
CGACTCGAGATAGTAGCACCTATgtaaactttattgattttgtagtCTTG
TAGTCATGCCAATGCATGGActaatttatgataaaaaaactcccTTTTCC
TTTTAATGGTTCGATCTACAAGCAAAGTCAGTATATTTGATTGAATAATC
CAACGAAATAGAGTGGGATACTGATTACAGTGTGATTAGTCATCAATGGC
AAAATATAGAGTCTTTAAATACCAATTTTAAATGCTATATGTTAAAAAGG
GTATTAAAAAAACGGAAAAGAACGTATTTTTAAAACGGATCATGTAAATA
AAAGACCAGCATCATTAATTCTGTTGGAATAGATCTAATTAGAtctcttt
gttttcaatttttaattcaacTACAAAAAACCTAATCATTTGACATTATT
GGTGACTCATTTGATAGATTTGATATCAGTACTAAggcctttttatgttt
atatTCTTAAACTATGGCAGACTTTACAccttaaaataaataaaaaataa
aataactaTAAAATTCCTTAATTAAGCATGATTTTTACAATTCAAGCTTA
AAGGATTTTTCACACCGTTTGCTTACAAAAAATtccttaaacaaaagaaa
gaacgaaTCTCACTCTAGTAAGGAAAATAAGCAATGatgttataatttga
aatgttaTAGTTTTCTGTACAagaaaaattttacaattttcaacttttaa
aatgtctAAAGATTCCCCAATTTATACCGatttagcaccaaaaataaagc
tcctcaaataaaaaacatgagctgttgatacttgaaatggaaattttata
cctaGTAAGTCGATTTGGTCTAtacttttgttttctaaaactttatcaga
aaaattacatgataatctttaaacttttgcgccgttggtcttactttact
ctcttcaaaagatcaatggctgaaataGGGCCCAAAATTGGCAGGCataa
gggttctttgtaattttcGCGCTGCAGGCAAAAAAAGTCTGCGTAAGAAA
gttcaaacagcttaaaagatcttctaaaaaggagaagGTTATTCATAATA
AGacctagacgatgttatcgtccgttacacagtgatagtaaaggcgggaa
aaaatggcggtatggcattatggcggtatacggaaaaaaatcggcgggag
agtttcgaagaaactggcaactctaccgactgctaactcttttcggcaaa
aaaacccgtttgcgaattctcttcggctttgggcttttttcttagatagt
gattcgtcttagactataacatagtctaaataagaccacaaaaaccacag
cgagcatcatcaagtttcgatctttttggcaatctctcattttgggggtg
agcatcctctttaacccctggtggataaaACTAACATTGCATTTTTAGAA
TGTGCGCTATAAACGTGCCGAAGGGCGCCACATTGCCtaattaaacatca
acaaattttggcgcccccttgaaaagctcttttggcgcccctctcagatc
tttctgggtggtgcactgcacaccctgtaCCCCCTGCCAGGTCGCAACTG
CTACTTTTGTGTTTAGTTATAATAATTTTTAATGATGACAGATAACAAAG
AAGGGTAGTGCTAATTTTCGCGCTCAAtcatagatgaaaatgaaaaccac
GATGTACCATCAACTGCTTATTCGAAAGAAAATAAGACTTTCTCTCTCAA
AACTGCACAAAATCCCTCTTTCATACTCGAATCaaccaaggacacttgta
tagcgtagctacgctatacaagtgtccttgaaTCAACCCCCTGACAAACC
ATTCGAAATTGCAGCTTTGCTACCATCTTGCGTTACACACATCTTTTATa
aagtctaaaaataaaattgaaaattttcatgatggaaatattcttacgat
attcttaattttttggctattctcatcattatttttataaagtattatta
taaaaaaagcgtgtagtttgCTAAGGGATTTAAAGATAAAACTCTTAAAT
TTAAATACACAGTATGTTTCTATTAGTAATTTAATCCATCGTAACGTATT
AAATCTGTACCCCGTTTAGATAAATTTGATATGACGTTAATGAGTCAACA
AATagttttttgctttctttctctTGTCTGTATATAAATAAATTATCTTT
TCAGAGAATGGTATCGTATTTCTCTAAATGTGTTTGTTGATGCAGTTTCG
TGTTTATTAGTGATTATGCAGGGTGGATTAGAAATAAATTGCTACCGAGT
GAACTTTCTACCCAATTCGACAACGTCAGTTGAAAGTACTGGGGAGGACG
ATCAGAAAAATATTGATCGCTCTTTTGGCTTTGACGGTGGATTTTCGTCA
CGAAAGAGactttacagtatacccctttATATACAGGAGTATAAGCCATT
TAGATTTtcatatttaaattttgaatcACAACGCAAACAAACTGTTGCTC
ACATATTGGTTTGCTCAGTCGGTGAAGATTGCAAGTCTCTCAATCAAAAT
CACATCAAGCTTGTTCTAAAGCTAAAGGAAAGTACCAACGCTGATTATGA
AAATGGCGTCTTTTATGACAATTCATCAGGACGATGGTTTATCATCGGAA
ACGTTTCGGACTTCACTTTCGGAGCACATCACACACAAGAACAAGGTGAA
ATTGTTGTTTACTCTGGAGTTGTAGACGGAACAGAACCTGACGGGACAAC
TATACACTGCGATCAAGAATCATTTGTAAAGCTCAGAATTATGTTGCCAC
CT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046640-exon-scaffold_116-1491911889:264752..265018 | TCONS_00046640-exon-scaffold_116-1491911889:264752..265018 | Clytia hemisphaerica | exon |
| TCONS_00046640-exon-scaffold_116-1510915933:264752..265018 | TCONS_00046640-exon-scaffold_116-1510915933:264752..265018 | Clytia hemisphaerica | exon |
| TCONS_00046640-exon-scaffold_116-1575043694:264752..265018 | TCONS_00046640-exon-scaffold_116-1575043694:264752..265018 | Clytia hemisphaerica | exon |
| TCONS_00046640-exon-scaffold_116-1491911889:274447..274553 | TCONS_00046640-exon-scaffold_116-1491911889:274447..274553 | Clytia hemisphaerica | exon |
| TCONS_00046640-exon-scaffold_116-1510915933:274447..274553 | TCONS_00046640-exon-scaffold_116-1510915933:274447..274553 | Clytia hemisphaerica | exon |
| TCONS_00046640-exon-scaffold_116-1575043694:274447..274553 | TCONS_00046640-exon-scaffold_116-1575043694:274447..274553 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_116 | supercontig | scaffold_116:264752..274553 + |
Blast
The following BLAST results are available for this feature:
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