TCONS_00046599 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046599
Unique NameTCONS_00046599
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length921

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046599 ID=TCONS_00046599|Name=TCONS_00046599|organism=Clytia hemisphaerica|type=transcript|length=921bp
CGTTACCAATACATATAAAAGAGAGATTCTTTCGAATCATTACATTATAA
TCAAGATTACATACAAACAAGACACACACTTGTTATACTATAAAACTCAA
TTCATTATGAGGAAGAAAAGTTTCCGCGAAGAATTTGTTAAAGTTGCCTT
TATGGGGCCTGGAGCGAGTGGCAAATCATGCATTGTGCACCGATTGGTTG
GAAAGAAGTTCTCTGAAGAGTACGAACCGACCGTTTTCGATTTTTATGAT
TACGAAAGCAAAGTGGATAACACATGTCGATTAAGCTTACAAATTTCGGA
CACAGCTGGCGCTTTTTCATTTCCAGCCATGGACAGACTTACTATACAAA
AATCAGACGTTGTTGTCGTTGTTTTCGACTTGACGTCGATGGGCTCGTTA
AAACAAGCTATGAAACTGGCGAAAGAAATTCGGGGAGATAATCCGAAAAA
AGCTGTATTGGTGATCGGAAATAAATCGGATTTGGCATTGCGAGTGGCAG
CTAAGAAAGAACTTGAAAATACAATCACTTGTAATCTTCAGATGGGTTAC
TGTGAACTTTCTGCGAAATATGATNCTAAGAAAGAACTCGAAAATACAAT
CACTTGTAATCTTCAGATGGGTTACTGTGAACTTTCTGCGAAATATGATG
ATGTTTCTGCTGACTTGATACCAAGAATTGCTGAAGAATTCGCCATTTCC
AAAGGACCTTACGATGTGAAGAGATCGCGAAAACCTCTCTCTGCAAAATT
CAAAAGGAAGCTCTCAAAGAGCACTGAAAACCTCCTTGACTTATTCTAAG
CTATATAAATCTTTTATAAACTTGAATACTTAGTAAATATcttgagaatt
ttgaaaaaattatttattgtaaatttttgtatattttgtatattgGCAAG
AAACTATTAGTAAGAATTGAC
Run BLAST on NCBI

protein sequence of TCONS_00046599-protein

>TCONS_00046599-protein ID=TCONS_00046599-protein|Name=TCONS_00046599-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
VTNTYKREILSNHYIIIKITYKQDTHLLYYKTQFIMRKKSFREEFVKVAF
MGPGASGKSCIVHRLVGKKFSEEYEPTVFDFYDYESKVDNTCRLSLQISD
TAGAFSFPAMDRLTIQKSDVVVVVFDLTSMGSLKQAMKLAKEIRGDNPKK
AVLVIGNKSDLALRVAAKKELENTITCNLQMGYCELSAKYDXKKELENTI
TCNLQMGYCELSAKYDDVSADLIPRIAEEFAISKGPYDVKRSRKPLSAKF
KRKLSKSTENLLDLF
Run BLAST on NCBI

transcript from alignment at scaffold_114:54864..55784

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046599 ID=TCONS_00046599|Name=TCONS_00046599|organism=Clytia hemisphaerica|type=transcript|length=921bp|location=Sequence derived from alignment at scaffold_114:54864..55784 (Clytia hemisphaerica)
GTCAATTCTTACTAATAGTTTCTTGCcaatatacaaaatatacaaaaatt
tacaataaataattttttcaaaattctcaagATATTTACTAAGTATTCAA
GTTTATAAAAGATTTATATAGCTTAGAATAAGTCAAGGAGGTTTTCAGTG
CTCTTTGAGAGCTTCCTTTTGAATTTTGCAGAGAGAGGTTTTCGCGATCT
CTTCACATCGTAAGGTCCTTTGGAAATGGCGAATTCTTCAGCAATTCTTG
GTATCAAGTCAGCAGAAACATCATCATATTTCGCAGAAAGTTCACAGTAA
CCCATCTGAAGATTACAAGTGATTGTATTTTCGAGTTCTTTCTTAGNATC
ATATTTCGCAGAAAGTTCACAGTAACCCATCTGAAGATTACAAGTGATTG
TATTTTCAAGTTCTTTCTTAGCTGCCACTCGCAATGCCAAATCCGATTTA
TTTCCGATCACCAATACAGCTTTTTTCGGATTATCTCCCCGAATTTCTTT
CGCCAGTTTCATAGCTTGTTTTAACGAGCCCATCGACGTCAAGTCGAAAA
CAACGACAACAACGTCTGATTTTTGTATAGTAAGTCTGTCCATGGCTGGA
AATGAAAAAGCGCCAGCTGTGTCCGAAATTTGTAAGCTTAATCGACATGT
GTTATCCACTTTGCTTTCGTAATCATAAAAATCGAAAACGGTCGGTTCGT
ACTCTTCAGAGAACTTCTTTCCAACCAATCGGTGCACAATGCATGATTTG
CCACTCGCTCCAGGCCCCATAAAGGCAACTTTAACAAATTCTTCGCGGAA
ACTTTTCTTCCTCATAATGAATTGAGTTTTATAGTATAACAAGTGTGTGT
CTTGTTTGTATGTAATCTTGATTATAATGTAATGATTCGAAAGAATCTCT
CTTTTATATGTATTGGTAACG

Coding sequence (CDS) from alignment at scaffold_114:54864..55784

>TCONS_00046599 ID=TCONS_00046599|Name=TCONS_00046599|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_114:54864..55784 (Clytia hemisphaerica)
TTAGAATAAGTCAAGGAGGTTTTCAGTGCTCTTTGAGAGCTTCCTTTTGA
ATTTTGCAGAGAGAGGTTTTCGCGATCTCTTCACATCGTAAGGTCCTTTG
GAAATGGCGAATTCTTCAGCAATTCTTGGTATCAAGTCAGCAGAAACATC
ATCATATTTCGCAGAAAGTTCACAGTAACCCATCTGAAGATTACAAGTGA
TTGTATTTTCGAGTTCTTTCTTAGNATCATATTTCGCAGAAAGTTCACAG
TAACCCATCTGAAGATTACAAGTGATTGTATTTTCAAGTTCTTTCTTAGC
TGCCACTCGCAATGCCAAATCCGATTTATTTCCGATCACCAATACAGCTT
TTTTCGGATTATCTCCCCGAATTTCTTTCGCCAGTTTCATAGCTTGTTTT
AACGAGCCCATCGACGTCAAGTCGAAAACAACGACAACAACGTCTGATTT
TTGTATAGTAAGTCTGTCCATGGCTGGAAATGAAAAAGCGCCAGCTGTGT
CCGAAATTTGTAAGCTTAATCGACATGTGTTATCCACTTTGCTTTCGTAA
TCATAAAAATCGAAAACGGTCGGTTCGTACTCTTCAGAGAACTTCTTTCC
AACCAATCGGTGCACAATGCATGATTTGCCACTCGCTCCAGGCCCCATAA
AGGCAACTTTAACAAATTCTTCGCGGAAACTTTTCTTCCTCATAATGAAT
TGAGTTTTATAGTATAACAAGTGTGTGTCTTGTTTGTATGTAATCTTGAT
TATAATGTAATGATTCGAAAGAATCTCTCTTTTATATGTATTGGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029743XLOC_029743Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046599-proteinTCONS_00046599-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046599-exon-scaffold_114-1491911889:54864..55784TCONS_00046599-exon-scaffold_114-1491911889:54864..55784Clytia hemisphaericaexon
TCONS_00046599-exon-scaffold_114-1510915933:54864..55784TCONS_00046599-exon-scaffold_114-1510915933:54864..55784Clytia hemisphaericaexon
TCONS_00046599-exon-scaffold_114-1575043694:54864..55784TCONS_00046599-exon-scaffold_114-1575043694:54864..55784Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_114supercontigscaffold_114:54864..55784 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.149485	0.0485904	0	0.0551963	0.201589	0	0.99775	2.02755	2.32228	8.1171	3.42247	1.24846	4.60523	3.43098	2.7113	6.10744	0.231349	0.789321	1.23073	0.777328	0	0.352484	0.342793	0.155824	0.320991	1.09816	0.341622	0.0729177	2.69478	0.281738
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00046599 vs. Swiss-Prot (Human)
Match: DIRA2 (GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIRAS2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.401e-18
Identity = 50/148 (33.78%), Postives = 76/148 (51.35%), Query Frame = 2 
Query:  140 KVAFMGPGASGKSCIVHRLVGKKFSEEYEPTVFDFYDYESKVDNTCRLSLQISDTAGAFSFPAMDRLTIQKSDVVVVVFDLTSMGSLKQAMKLAK---EIRGDNPKKAVLVIGNKSDLALRVAAKKELENTITCNLQMGYCELSAKYD 574
            +VA  G G  GKS +V R V   F E Y PTV D Y      D +   +LQI+DT G+  FPAM RL+I K    ++V+ +TS  SL++   + +   EI+GD     ++++GNK D +     +      +    +  + E SAK +
Sbjct:    9 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSI-CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLN 155
The following BLAST results are available for this feature:
BLAST of TCONS_00046599 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DIRA21.401e-1833.78GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIR... [more]
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