TCONS_00046572 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046572
Unique NameTCONS_00046572
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046572 ID=TCONS_00046572|Name=TCONS_00046572|organism=Clytia hemisphaerica|type=transcript|length=684bp
actttttcccttGATTGAATATTcttgaatcaatcaatcaatcagatGTT
GAAATAATTAGCGGTTAATTATTCATGAAAATCAGCATAAATTAACATTT
GATATTCCCCTACTATCCATGAGTCtctttgttcaaattttcagaaaaac
gtTGCCACCCTTGCAACTCTATTCACTAAAACGCAAAAATAttatgattt
caaaattttttgagcgaaatttgaaaagaaaaataatcaaaaattatttt
aaaatgtcGTTTCCCCACGCCAGGGGTTTATTTAAGATAAAAGATTtaat
gaaaagattttttgaatctAAACAATAAAACTTTCGGGTAGGGAACCAGC
CTTTATCTTCAACCAAACAGCTGCCTGGAGACTTGAAATTCAACACTTGG
TGGACCGTTATTAAGGGGAaatttaaaatctcttaaaGCTCTCTTCTGAT
TGGTGAATCATAAACAATCCGAGCAATATATTCTTATTTAACAGCCAATC
AGAAGTGAGGTTTAGACAAACTTCAAATCGAATGAAAATCGATTAAAAGT
CCCTTAGAATCGGATTTCAATCCATTCcaaataatcaaataataaaTAAC
ACATGTCCATGAAGAAATGAAATCTTTTGTTAATCGACTACACTTTTcct
cttcattttttcatcttcatttttgttcTTCTAG
Run BLAST on NCBI

transcript from alignment at scaffold_113:384863..385546

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046572 ID=TCONS_00046572|Name=TCONS_00046572|organism=Clytia hemisphaerica|type=transcript|length=684bp|location=Sequence derived from alignment at scaffold_113:384863..385546 (Clytia hemisphaerica)
CTAGAAgaacaaaaatgaagatgaaaaaatgaagaggAAAAGTGTAGTCG
ATTAACAAAAGATTTCATTTCTTCATGGACATGTGTTAtttattatttga
ttatttgGAATGGATTGAAATCCGATTCTAAGGGACTTTTAATCGATTTT
CATTCGATTTGAAGTTTGTCTAAACCTCACTTCTGATTGGCTGTTAAATA
AGAATATATTGCTCGGATTGTTTATGATTCACCAATCAGAAGAGAGCttt
aagagattttaaattTCCCCTTAATAACGGTCCACCAAGTGTTGAATTTC
AAGTCTCCAGGCAGCTGTTTGGTTGAAGATAAAGGCTGGTTCCCTACCCG
AAAGTTTTATTGTTTagattcaaaaaatcttttcattaAATCTTTTATCT
TAAATAAACCCCTGGCGTGGGGAAACgacattttaaaataatttttgatt
atttttcttttcaaatttcgctcaaaaaattttgaaatcataaTATTTTT
GCGTTTTAGTGAATAGAGTTGCAAGGGTGGCAacgtttttctgaaaattt
gaacaaagaGACTCATGGATAGTAGGGGAATATCAAATGTTAATTTATGC
TGATTTTCATGAATAATTAACCGCTAATTATTTCAACatctgattgattg
attgattcaagAATATTCAATCaagggaaaaagt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029721XLOC_029721Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046572-exon-scaffold_113-1491911889:384863..385546TCONS_00046572-exon-scaffold_113-1491911889:384863..385546Clytia hemisphaericaexon
TCONS_00046572-exon-scaffold_113-1510915933:384863..385546TCONS_00046572-exon-scaffold_113-1510915933:384863..385546Clytia hemisphaericaexon
TCONS_00046572-exon-scaffold_113-1575043694:384863..385546TCONS_00046572-exon-scaffold_113-1575043694:384863..385546Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:384863..385546 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.14938	0	0.0845678	0.0827364	0	0	0.480129	0.359593	0.0629398	0	0	0.397945	0.149022	0	0.0848229	0.045514	0.112139	0.0574694	0	0.24925	0.216644	0.528356	0	0	0	0.143138	0.20483	0.1093	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top