TCONS_00046529 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046529
Unique NameTCONS_00046529
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046529 ID=TCONS_00046529|Name=TCONS_00046529|organism=Clytia hemisphaerica|type=transcript|length=811bp
GNCACAACAGAAATGACATTCTTTTCTCATCAACAAGGTATCCAATCTAT
TCCACAATTTGTTTCGCCGAAATCACAAAGATCAACTGGCTCCTTACAGT
ACGACAAAATAATACAAGATATGGAAAAAATTCTTCTTGGGGATAGAGAA
ATCACTCCTGTTACACCCGTTGATAAACGCTTTGCTTGTCCACTATGTGG
AAAACTTATGCAAAATCCACTGCAGACTGACAGAGGAATGGTGGCCTGTA
CCTCATGCTATGAAGATAGACGCAGAGAAATAGGCTCTGAAATATGTCCA
CTTGATGGGGAAAAAATTGAAcatgacagttttacaagactAGATAAATT
CATGGTCAGAGAAATATCCAAAATCCAAGTCCAGTGTTTTTATGAAGAAT
GTAAATGGAAAGGAGCACTCAATGATATAAATAGACATGAAGAAACAGAC
TGTCAATATGCAAGAACTGAATGCGATATTTGTAGGCAGAAAGTTCTCAA
GAAACAATTTGCAGAACATAGAGCAAAAGATTGCACTGGAAATTACGATG
TTGAAATGGAGGAAACTTATGATACTGAGGAaaccaaaatgaaatcaaaa
tttaaatgtCCAAGTTGTGGAAAAGAAGTTGAATCATCGAACTCTCATAA
CCATTGGAAAGATTGCCAAGcgTTTGCAATTCGTATTGCATCTCAACTTT
TGAGAAGAGACCGGTATTTAAAAGCGATCTTAAATGAGACCTGAAGAGAC
CGTGTAAATATACTAGCACTGAATGCGATATTGGCAAGCAGAAAGCTCTC
AAGAAAAGCAG
Run BLAST on NCBI

transcript from alignment at scaffold_113:187084..191714-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046529 ID=TCONS_00046529|Name=TCONS_00046529|organism=Clytia hemisphaerica|type=transcript|length=4631bp|location=Sequence derived from alignment at scaffold_113:187084..191714- (Clytia hemisphaerica)
GNCACAACAGAAATGACATTCTTTTCTCATCAACAAGGTACTTTTATTCA
GGCCGTATTTTACTGGTTTTTACCTTTACTGTATATGTTTTGCGGTTCAA
ACGATTTTTCATATGATGGATAAATTCTCAATTATGTATTGTTCTATGTC
AGGTATCCAATCTATTCCACAATTTGTTTCGCCGAAATCACAAAGATCAA
CTGGCTCCTTACAGTACGACAAGTAAGCAGATTTTTTTAATTTCAATTTT
TTTCATTTTTTGTATTAAAATGTCTCTATATATTTTGTTCAAAAAATTAG
ANAATTTTTTTCATTTTTTGTATTAAAATGTCTCTTTATATTTTGTTCAA
AAAATTAGGTTAAAAAGTAGAACTCTAAAAAGTACAACACTCGCGAATCT
CGAAAAGGATAATTCCAGATTTCAGTATTTTGATATTTTGAAAGTCTATA
ATTTCCCAAAGGATGGCTCTTCGGTTTTCCCCTTTGATGGTTAAATGGAA
ATTTTGCCGAGGCGCCATCTTATGATGACGTATCCGATAGCCAATCAAAT
GAGCGAGAGAATAAAGGGAAACTCCAAAGTTTTGTTTTGAAAATCAAACC
GAAAGTTCTTTTTTTTTGACGTTTTGCACTTGGGTTTTTTCAAATGAACT
TTGCTGGATGATGGTTTTTATTTTTTTTGGAGTTCTTCCAGGAATTGTTT
AAATTCTAAAAATAGGATCTTCTTTTTTAGAATAATACAAGATATGGAAA
AAATTCTTCTTGGGGATAGAGAAATCACTCCTGTTACACCCGTTGATAAA
CGCTTTGCTTGTCCACTATGTGGAAAACTTATGCAAAATCCACTGCAGAC
TGACAGAGGTACAATACACCTTTCCCGTAATTCAAATTTCTCAGAAATGG
CCCGGGAAAATGTGCGCTCCACCGTTGTGTATAAAATTGTTTAGGAGGTA
AAAAACGCGTTTTTGCCTGCGAGGGGTTAGGGAAAGTGGGATTTTAGCCT
CTAACTTTTGACAGCGACCTTCTTTTGGCAAAATATTTTCAGGGTGGTAT
AATATCATGAATAGATTGAACATACTAAAATTTGAGGGGATTTTGTTCGA
CAGAACTTATGAAAAGCTCAAAAAACCAACTTTCCCTAAGGGAACGCAGG
CAAAAACGGGTTTGTTTACCTCCAGAGACCAAACGGTGGAGAGCATCAAA
ATAATGCGCGCGCATTAGTTTTACGAATTACGGGAAAGGTGTATTCCTTT
ATAAATTACCAGGTTGCATGTTACTTCAAGTTCTGTAGCATTACTTTATA
AGCGGCCTAGTCAATTCCATTTTTAATCATACCAACCATGTCAAAGTCAA
AGATATGATAATTATATCTGGATAGCTTCAACTCTTGGGCCTTGTCGTTC
AGAGTCTTGTTTGACAGATATCCTTGCCTTGTTTTGAAGTAGATATTAGC
TATTGTATTGTTTGTAATTTATATTTTTTAGACCTTTATATTAATCAAGA
TGTCCTGAAAACCTTCAATTACCCCCTTGAAAAATCTAAGATTTGACCCC
CAACTCGGGAAAAGTTTGTTGACAGTAATACACCCCTGTATGGTTTTTAA
AATGAAATACGCGTTGTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAACTTGTTTTCTTATTCTCAGCCTGAG
CAGTTCCTTAACAATTCCTTATTTTTTGGACCATTTTCAGCCTCGAGTTC
CTTATAAACGTGTTTCTTATAAAAAAAAAACGTGTAGCCTAATGCATAAT
TATAATAGTGCACAAATTTTCCTCTCATCATTGTTTTGGTGTTTGAATTT
TTAATTATTCAGTATAACATTGTGGTAAACAAAAGGTCTACTGATTTTTT
TAAAGGAATGGTGGCCTGTACCTCATGCTATGAAGATAGACGCAGAGAAA
TAGGCTCTGAAATATGTCCACTTGATGGGGAAAAAATTGAACATGACAGT
TTTACAAGACTAGATAAATTCATGGTCAGAGAAATATCCAAAATCCAAGT
CCAGTGTTTTTATGAAGAATGTAAATGGAAAGGAGCACTCAATGATATAA
ATGTAAATATGCTCATTTCAGTTAAACGTCTTTACAATGTTTTGAATACT
ACACTTAACATAAGTTTGTCTAATTTCGTCATATCTCATCTAATTCTGAC
TACCCTTTTTTAGAGTTGAGAACAAAAGAAAGGTCAAAATTGCTGATTGA
CTTGCTTAGCAGTAAAGGGGAAGAAATCTATTTTAATCGGTGATTCTGAC
CTTCCTATTATTCCCATCTCTAAAGAAGGGTGTCGAAATTAGATGCGGCA
TGTCGGTCGGGTGTAATTTCTATTTCTATCCATTTATTTTCATAAGCCTA
AAAAAGCTAACATCGCAAATAGAGACCAACTTAAGGTAGTAACATTGAAA
ATTTAGTAACATCATATTTTTTGAAAGATTTTGTCACTATTGTCAATTCT
CAGATTTTAAATATTTGCTATTAATACCTTTTATTTCCAGAGACATGAAG
AAACAGACTGTCAATATGCAAGAACTGAATGCGATATTTGTAGGCAGAAA
GTTCTCAAGAAACAATTTGCAGAACATAGAGCAAAAGATTGCACTGGAAA
TTACGATGTTGAAATGGAGGTAAGTAATTAAGGACATTTCATTTAAAGTT
GTTTGCTGGTGGACCTGTTGATGCTTTTGAAAGAAGGTTTTGGCTCTTTT
GAAATTTGATTATATACTTTAAAAGCTCTACTTTGATTCTTTGAAACTCA
AGTTCTCTTCTTTGTTGATTGCATGTTATTGATTTTGTTATGTTCCATTT
TCAGGAAACTTATGATACTGAGGAAACCAAAATGAAATCAAAATTTAAAT
GTCCAAGTTGTGGAAAAGAAGTTGAATCATCGAACTCTCATAACCATTGG
AAAGATTGCCAAGGTACAAAATGTCCTTATGAACAATTTGGGTGCAAAAA
TACCTATGGCAGAAGTGCTAAGGAACATGAAGAACATATTTCAAATTACC
ATAGCTATGATCATTGTGTATTAGAATTTGTTCAAGGTGTATTGGAAGAA
AATAAAAACCTTGATAGCAGGATAATGCAAATGACAAGAGATAAACAAAC
AATGGATAGGAAATTCTCATCTTTACACAATGATTATCAAATCCTACAAA
ACAAATGCAAGGAACTTTTAGAGAAGTCTCAAAAGAAAGATAGGGATATT
AATCTTCTTGAATCTAAATTTCAAAAACTTTATAATGTTGTTAGTGATCT
GGAACAAAATCAATATGAGAAAAAAGAAAGTGAACTCAAGAATATTGTAG
GGAACTTATCAACAAAAGGAAATGCACTTTTTGACATTACTAAATTGAGC
GAAAGTGAAGAATTAATAAGAAAAGTTGAAAGCGACCAAGCTATGTTAAG
TGCAAATTTAGCAGATACAAACCTCAAAGTGAAACTTTTAGAGCATCGCT
CCACAAATGGTACATTGATATATAGGCTGGAAAACTTTACCCACAGACTT
GAACAAGCACGCCAAGGAAAAATTTTTGCATTGCATTCACCACCATGCTT
TACTTCCCCAAACGGTTATAAATTTTGTTTACGAGTTTACCTTAATGGTG
ATGGCATGGGCCAAGGAACACATATCTCAATATACTTTGTTTTAATGAGA
AATCACTACGATAACCTCCTTGAATGGCCGTTCCAAAAGAAAATTTCAAT
CAGAATGATTAATCATAAAAGCCGACAAAATGATAAGAGAGAAACTTTTA
ATACCGATAAAACTTCCACATCCTTCCGTAAACCTGATAAAGAAATGAAC
ATGGCGGCAGGATGCCCCAAATTCCTTGATTTGAGTAGTTTATTAAATGG
GGGTTACTTGGCGGATGACTCCATTTTCATTGAAGTAAAAGTTGAAGATC
CTGTCAAAAGATGATTATGGGTGATAAATAATACTCAAAAATAATGATAA
TAATTATCACCTTTATGACAATGTTGATTTGAAATTTCCATTGATTTGAA
AATAAGCAATATCCTCAAGGCAAGACTGTTTCATGATCACAGAATTATGA
TTTGGCAATTCAAATATTGTAAGTATTATCTAAAAAGTTTTTAAACATCT
TGTCTGTTGATTCTAGTTTTAACAAGATGGATATTTTTTCAGTTAGTGAG
CGTTTTCTCATTTCTTTATCAAACGTTACTGTTCCGAATCCTAAATATAT
CACTTACTCCTATAGATAAAACTGTGTTTCTTTTTTTCAGCGTTTGCAAT
TCGTATTGCATCTCAACTTTTGAGAAGAGACCGGTATTTAAAAGCGATCT
TAAATGAGACCTGAAGAGACCGTGTAAATATACTAGCACTGAATGCGATA
TTGGCAAGCAGAAAGCTCTCAAGAAAAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029698XLOC_029698Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046529-exon-scaffold_113-1575043694:191678..191714TCONS_00046529-exon-scaffold_113-1575043694:191678..191714Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1575043694:191493..191562TCONS_00046529-exon-scaffold_113-1575043694:191493..191562Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1575043694:190857..190984TCONS_00046529-exon-scaffold_113-1575043694:190857..190984Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1575043694:189413..189609TCONS_00046529-exon-scaffold_113-1575043694:189413..189609Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1575043694:188846..188974TCONS_00046529-exon-scaffold_113-1575043694:188846..188974Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1575043694:188552..188660TCONS_00046529-exon-scaffold_113-1575043694:188552..188660Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1575043694:187084..187224TCONS_00046529-exon-scaffold_113-1575043694:187084..187224Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1510915933:191678..191714TCONS_00046529-exon-scaffold_113-1510915933:191678..191714Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1510915933:191493..191562TCONS_00046529-exon-scaffold_113-1510915933:191493..191562Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1510915933:190857..190984TCONS_00046529-exon-scaffold_113-1510915933:190857..190984Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1510915933:189413..189609TCONS_00046529-exon-scaffold_113-1510915933:189413..189609Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1510915933:188846..188974TCONS_00046529-exon-scaffold_113-1510915933:188846..188974Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1510915933:188552..188660TCONS_00046529-exon-scaffold_113-1510915933:188552..188660Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1510915933:187084..187224TCONS_00046529-exon-scaffold_113-1510915933:187084..187224Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1491911889:191678..191714TCONS_00046529-exon-scaffold_113-1491911889:191678..191714Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1491911889:191493..191562TCONS_00046529-exon-scaffold_113-1491911889:191493..191562Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1491911889:190857..190984TCONS_00046529-exon-scaffold_113-1491911889:190857..190984Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1491911889:189413..189609TCONS_00046529-exon-scaffold_113-1491911889:189413..189609Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1491911889:188846..188974TCONS_00046529-exon-scaffold_113-1491911889:188846..188974Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1491911889:188552..188660TCONS_00046529-exon-scaffold_113-1491911889:188552..188660Clytia hemisphaericaexon
TCONS_00046529-exon-scaffold_113-1491911889:187084..187224TCONS_00046529-exon-scaffold_113-1491911889:187084..187224Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:187084..191714 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.96996	4.07657	1.80034	0.985106	1.36934	5.16036	5.0884	7.47539	4.51983	2.95821	3.12586	1.50824	10.1598	7.16268	7.48163	10.3885	14.4033	8.85082	3.71189e-06	11.46	1.36532	0	1.50914	0.65714	13.6178	8.0115	9.07791	15.4368	13.2675	4.19356
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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