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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046506 ID=TCONS_00046506|Name=TCONS_00046506|organism=Clytia hemisphaerica|type=transcript|length=1521bp
AcagatttaaaaaacaaaacaaaatgaattcATCGTACAAACTACTAGTT
TCCACCATATGCATCCTGGTTTTAGGCCTGGCAGGTCTAATTGTCGGGAT
GCTGGCTGATCACTGGTTTCACATCGAAATGCCTGGTGCTTATACGTCAA
ATTTTGGAATGCTTCGATTGTGCATCAGAAAATGGTCATTCGATAATAGA
TATGAGACTACATGTTCACAACGACCTATTCAAACTTTCTCAGACAACAC
TGTATGGCAACTACCTATCGAAGGCGCAGTATTCGATGAGATTCTGACAT
TACTGATGACGTCAACATTGATTGGAGGAGTTGCATTTGCTTTCTTTGCA
TTCATGGGTTTGACGATGGAGAAGAAAAGATTCAGATGGAGGTTGACTGG
CGTCTTCGGATTCTTCCTCACGCTCACTGCAGCAATCATAGCCATCACAG
CATGTGCCATATCAGAAGGATAcatccaaaatgaacttttacaTCGTGAT
TACAATGTGACTGAACAATGGACGTCTACTGTCTGTTGGTGTGGTGCAGC
ATTACTCATCATTGCTTGTTTAGCTTCACTTTTCGTCATCTACAAGGCCC
CTGATGATGATTCAAATAAAGATTATTCCAACACTGGCAACACTGAACCA
GTATATACCGTCCAAGCCAACATTCTCCACACCAATGAGAATCTGTACAT
GGATGCAGTGACTGCTTTACCAGATACTGTCGCTTTGAGTCTTGATTTCT
TTAACATTGCTAATGAGCTACCACCTCCACCAAGTTATGCTGAAGCAAGG
AGGGATCAAGGTACACCACCTTCTTACATTGAGATTGTAGGCATTAGTAA
CCCATACACATCTTTATAGAACCCTGGTTGGAGCAAAAGAATATGAGTTA
TGTTTGTTCACTCAAAATGGATTGAGTTTAAGTCTAAGTTGATTTCTCAA
CATTGGATCGTCTACAAAAAGCTCCAAAGTCAACCACATCTGGAATAAAA
TACTAAACTAAGTTTGGTGATACAATACAATGTGGGAATTAGTTTTGGTG
AAGACTATGGCATTTAATAGGAATTTTGTTTCACTCTcctcttcaaaatt
tgaaatcaagaaTTTCCATTGTTTCAACCTTACTAGAAACAGtttaaatt
atcaaaaaatttcctgttCAAAATTTCCTGAAGATTTCGACTACGTAATG
AACTACGTACTACATAGGGAGAATTAgtaaattttctgtaaatattATAT
CAACTTTGTTCGGTtaaatttcaagttcaaaaatattgttttaaaaacat
tttttctaatttttaataCTTCACTTGTTATGTAAATTTTATTAccaatt
actttttaaaagcactatatttttttgtaaattttgtaaaaaaaactttt
gtataAAAATTGTCAGACAAAAAAANTTAAAAGcactatatttttttgta
aattttgtaaaaaaaacttttgtataaaaattgtcggacaaaaaaaaatc
atataaattttaagaattgaa Run BLAST on NCBI protein sequence of TCONS_00046506-protein >TCONS_00046506-protein ID=TCONS_00046506-protein|Name=TCONS_00046506-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
RFKKQNKMNSSYKLLVSTICILVLGLAGLIVGMLADHWFHIEMPGAYTSN
FGMLRLCIRKWSFDNRYETTCSQRPIQTFSDNTVWQLPIEGAVFDEILTL
LMTSTLIGGVAFAFFAFMGLTMEKKRFRWRLTGVFGFFLTLTAAIIAITA
CAISEGYIQNELLHRDYNVTEQWTSTVCWCGAALLIIACLASLFVIYKAP
DDDSNKDYSNTGNTEPVYTVQANILHTNENLYMDAVTALPDTVALSLDFF
NIANELPPPPSYAEARRDQGTPPSYIEIVGISNPYTSL Run BLAST on NCBI transcript from alignment at scaffold_113:218001..222614+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046506 ID=TCONS_00046506|Name=TCONS_00046506|organism=Clytia hemisphaerica|type=transcript|length=4614bp|location=Sequence derived from alignment at scaffold_113:218001..222614+ (Clytia hemisphaerica)
AcagatttaaaaaacaaaacaaaatgaattcATCGTACAAACTACTAGTT
TCCACCATATGCATCCTGGTTTTAGGCCTGGCAGGTCTAATTGTCGGGAT
GCTGGCTGATCACTGGTTTCACATCGAAATGCCTGGTGCTTATACGTCAA
ATTTTGGAATGCTTCGATTGTGCATCAGAAAATGGTCATTCGATAATAGA
TATGAGACTACATGTTCACAACGACCTATTCAAACTTTCTCAGACAACAC
TGTATGGCAACTACCTATCGAAGGCGCAGGTAAGGCTCATTTTCTTATTC
GCAtcagtttcaaattttcaacaggATTTCTTTGTTAGAAAATTATTGAC
TATTCGTATTTTCTTCATGAAGTTTTAGCATCAGGGAGAATATGAAAAAC
TAGTGACTTATGAAAACGATAATCAGGGTTAAAATTTAAACCACTGCAAT
TAAATCGAAAGGTATTGTTCCAGGGGGAGGGGAACCCCCCGCACTCGATT
AAAAAACGACCGTAAGTGCAGCCAGAAAAAGGCCTTTGAAGTCAGATCCT
TTACAGTgaactttgggaagcttggaaaatatacTCTTAAGGGTGGTACG
TaaggtaggtcatttaccttgagtgcttCCCAGGGGTATATTACAAATGA
TAATAGGTAGTTACCAAGTTCTTGATTATATCTTCGAAAACTTAGATGAC
TCATGACCATGGGAAAAAGTTTTAAGCAAGATTTGGCAATCTTTTTTTTC
TGGCAGGAATCGTAGGGAGCAAGTCCAGAAATTGGATTTAAAAAACGGCT
TCCTAAAAACTTTCTCATGGACATGTTGGTAAGCTTTCAAGTACTAGTCA
ACCACCATTCTTCTAAATCAAATTAGAAATcattaaaatataattaaata
TACTTTGTTTCTTGAGGCTTAACGAGATTTTAAAATGAggtcaaaatatc
agaaaacaatagaaagaaatcatcattaaggaattttttaattaaacttT
AAAACCAAAAGACCAGTAGTTATAGAGTGGTTTTTTGAACGTCCAGTCAA
CGTTCTAGAAGCACCATTGGCTAAAAAGCTGAGATTCCTCACATCAAAGA
ATAATTTATACTTTTATCTTTCAAAGTCAATATAGGTCGAATTTAGAAGA
TTTCCTCCAAGCTTTTCGAATTCTTTCTTTTATCAGATCTTGTTTATGGA
AACTGAATGATGTCTTTGTTTGAAAGTACTACCATTTTACAgatacaaaa
aacaaaacaatagacCAAGATATTTGCATCTTTAACAGTTTTCATGTTTT
GAAATATACAAATCTTTGTCAAAAAAACCCTCGAAAATACCAAGCAAATT
TAGCTCCACAAATTGGTCAATTATTTCGAGGTTTTGAAAGGCTTCTAAAA
ATATCTTAACTGCACTTCGGTCGACACTAATGAAATAATAATTCTAGCCC
TTGAATTTATGATCGTTTAaaccctaaaaatcaaaaataacttaaATTCT
CGTTAAGTGTGTCTTAAGTATCGATTAATTAAACACACTCTTTGTAATTA
AAAGACCTTTAGAAACGTTGATCTAGTAATTAAGGTCATTAAGACCAAAA
CTTAATTATCATTTTCCTAAAAGTTGTCTGGTATAACAAATCACCCCACT
ACTCAGTGAATTTTCAGTCGCTAATTAAATCTAAACTCGAAAACAGTTGA
TAGAATCTCCTACAGTCTTGGCAAGCGAAAAATCTATTTCATTTGAACTT
TTCCCAGGCCCGAGGAACTTTTAAGCACCTAAGCCAATGAAAAAGTTTGA
TAGACATATTTCTAAAACTTTCAGCACATGTAAAAACTTCTCTGACTAGA
AGGAAGATATCAAATGTGAGATATTATGCAAGCCAATCTAATTAGGAATA
TTCACCTAAGGAAAAAACCGCCATCAACTTCActccaaaaatctaaaaaa
aatgtagatTAGAAAATTATAAATTCTTTAACATTTAGAGGGtctaaatc
aaaaaatatactGAGCACGACTTTTTTGTTCACAAGCAACCTCATAAAAA
CTAAACTCTTAAACTAAACCATATCCCATAACTTCATCTAGTATCCAATG
AGATTCTGACGGTGAATCTTGTATGGTAGACTGTTAAAGTCTGCAACTTT
TTCCTAAGTAACCCTCCACTTTCTCATTCATCTAGTATTCGATGAGATTC
TGACATTACTGATGACGTCAACATTGATTGGAGGAGTTGCATTTGCTTTC
TTTGCATTCATGGGTTTGACGATGGAGAAGAAAAGATTCAGATGGAGGTT
GACTGGCGTCTTCGGATTCTTCCTCACGCTCACTGCAGGTAAGAACCACA
CCCCCTACCACACCCCTGTGTCTTGCATAATTCTTACGAGATTCTATAAG
CTTCTATTTTTCTTAAAGGGTAGCCATTATGGACTTAATTTTGTAGCCCT
AAAGGTTAATGCGGTATTACGCTAAAAGTAAAAAGAACGTGAAAAAGTAG
GAAAGTAAATTCCGATGAATTGAAAATCCTTTGAATCAAAAAAGATGAAT
CTACTAGAAATCTATCACATGACAAATTAAAACCAATCGAAAAGTTTCTT
TCGACATAATCTTGAAAAGCCAAAACCGATTAAGGGAGTTTTTATAAGGA
AATAGTAAATTGATCGACAATTAAAAGAACCTTCTACAATATATTTGTCT
ACGTGATATACAATCTACATCATGACTCGTCACTACCTAAACTAAGACGT
CATAATAAGGTCATAACCCTGTTCGTCAACCTCTTGAAAAAAGGAAGTAG
CTCATTTGTGATGACGTAATCATTCGTTCCTGGAAAATATCTTTGTTTAA
TTCCTAGTTTTTCGACAAAAAACATGTTCTAAGGGGAGAATGCGGCAAAA
GGGAGGTTAAGTATAATGCTTTTCTACGGCATGTTAAAATTTGGAATAGA
CTTTGAAGCTTTGCACTGAGAATTAGTGAAGAAATGAATTAAAACTTACT
CTCATATTTTCTCTCCAGCAATCATAGCCATCACAGCATGTGCCATATCA
GAAGGATAcatccaaaatgaacttttacaTCGTGATTACAATGTGACTGA
ACAATGGACGTCTACTGTCTGTTGGTGTGGTGCAGCATTACTCATCATTG
CTTGTTTAGCTTCACTTTTCGTCATCTACAAGGTAAAGATTAAAGACCCT
CCCTCCTCTCCTCGCAATTAAGTTAGATTCCCAAGAAAACATTTTGAGGG
TATTCAAGAAAATTTATCATGGAAGATACAAAGGGTCACAAGGAGGttta
accaaaataaaaaatcgttgTTTCGATAAGTTAACGAAAGTTAAAgaggg
gggtttgtaggggttcgaaataccgttttcccgtcaaaattttttctgaa
tccctgaatcccgaaaattgaaaaatttaataacattgtcacaccggttt
gtacaggttaaAATACCggtatattgacaaaaaataagaccaaataACGT
CAccgtctaatttcaaacttttttttcgtcaaatcccctAATACcatact
aaaaaagggccaatctcGTCACACcttaaaagtacaacccccggGACTAC
AGACACTCATGACTATATGCATACAATTCTCAGTTTTGACTATTGTCAAT
CAAAACAGACAAGGTTACATAATTTCTTACTCGTTCCAGGCCCCTGATGA
TGATTCAAATAAAGATTATTCCAACACTGGCAACACTGAACCAGTATATA
CCGTCCAAGCCAACATTCTCCACACCAATGAGAATCTGTACATGGATGCA
GTGACTGCTTTACCAGATACTGTCGCTTTGAGTCTTGATTTCTTTAACAT
TGCTAATGAGCTACCACCTCCACCAAGTTATGCTGAAGCAAGGAGGGATC
AAGGTACACCACCTTCTTACATTGAGATTGTAGGCATTAGTAACCCATAC
ACATCTTTATAGAACCCTGGTTGGAGCAAAAGAATATGAGTTATGTTTGT
TCACTCAAAATGGATTGAGTTTAAGTCTAAGTTGATTTCTCAACATTGGA
TCGTCTACAAAAAGCTCCAAAGTCAACCACATCTGGAATAAAATACTAAA
CTAAGTTTGGTGATACAATACAATGTGGGAATTAGTTTTGGTGAAGACTA
TGGCATTTAATAGGAATTTTGTTTCACTCTcctcttcaaaatttgaaatc
aagaaTTTCCATTGTTTCAACCTTACTAGAAACAGtttaaattatcaaaa
aatttcctgttCAAAATTTCCTGAAGATTTCGACTACGTAATGAACTACG
TACTACATAGGGAGAATTAgtaaattttctgtaaatattATATCAACTTT
GTTCGGTtaaatttcaagttcaaaaatattgttttaaaaacattttttct
aatttttaataCTTCACTTGTTATGTAAATTTTATTAccaattacttttt
aaaagcactatatttttttgtaaattttgtaaaaaaaacttttgtataAA
AATTGTCAGACAAAAAAANTTAAAAGcactatatttttttgtaaattttg
taaaaaaaacttttgtataaaaattgtcggacaaaaaaaaatcatataaa
ttttaagaattgaa Coding sequence (CDS) from alignment at scaffold_113:218001..222614+ >TCONS_00046506 ID=TCONS_00046506|Name=TCONS_00046506|organism=Clytia hemisphaerica|type=CDS|length=3468bp|location=Sequence derived from alignment at scaffold_113:218001..222614+ (Clytia hemisphaerica)
agatttaaaaaacaaaacaaaatgaattcATCGTACAAACTACTAGTTTC
CACCATATGCATCCTGGTTTTAGGCCTGGCAGGTCTAATTGTCGGGATGC
TGGCTGATCACTGGTTTCACATCGAAATGCCTGGTGCTTATACGTCAAAT
TTTGGAATGCTTCGATTGTGCATCAGAAAATGGTCATTCGATAATAGATA
TGAGACTACATGTTCACAACGACCTATTCAAACTTTCTCAGACAACACTG
TATGGCAACTACCTATCGAAGGCGCAGTATTCGATGAGATTCTGACATTA
CTGATGACGTCAACATTGATTGGAGGAGTTGCATTTGCTTTCTTTGCATT
CATGGGTTTGACGATGGAGAAGAAAAGATTCAGATGGAGGTTGACTGGCG
TCTTCGGATTCTTCCTCACGCTCACTGCAGCAATCATAGCCATCACAGCA
TGTGCCATATCAGAAGGATAcatccaaaatgaacttttacaTCGTGATTA
CAATGTGACTGAACAATGGACGTCTACTGTCTGTTGGTGTGGTGCAGCAT
TACTCATCATTGCTTGTTTAGCTTCACTTTTCGTCATCTACAAGGCCCCT
GATGATGATTCAAATAAAGATTATTCCAACACTGGCAACACTGAACCAGT
ATATACCGTCCAAGCCAACATTCTCCACACCAATGAGAATCTGTACATGG
ATGCAGTGACTGCTTTACCAGATACTGTCGCTTTGAGTCTTGATTTCTTT
AACATTGCTAATGAGCTACCACCTCCACCAAGTTATGCTGAAGCAAGGAG
GGATCAAGGTACACCACCTTCTTACATTGAGATTGTAGGCATTAGTAACC
CATACACATCTTTATAGagatttaaaaaacaaaacaaaatgaattcATCG
TACAAACTACTAGTTTCCACCATATGCATCCTGGTTTTAGGCCTGGCAGG
TCTAATTGTCGGGATGCTGGCTGATCACTGGTTTCACATCGAAATGCCTG
GTGCTTATACGTCAAATTTTGGAATGCTTCGATTGTGCATCAGAAAATGG
TCATTCGATAATAGATATGAGACTACATGTTCACAACGACCTATTCAAAC
TTTCTCAGACAACACTGTATGGCAACTACCTATCGAAGGCGCAGTATTCG
ATGAGATTCTGACATTACTGATGACGTCAACATTGATTGGAGGAGTTGCA
TTTGCTTTCTTTGCATTCATGGGTTTGACGATGGAGAAGAAAAGATTCAG
ATGGAGGTTGACTGGCGTCTTCGGATTCTTCCTCACGCTCACTGCAGCAA
TCATAGCCATCACAGCATGTGCCATATCAGAAGGATAcatccaaaatgaa
cttttacaTCGTGATTACAATGTGACTGAACAATGGACGTCTACTGTCTG
TTGGTGTGGTGCAGCATTACTCATCATTGCTTGTTTAGCTTCACTTTTCG
TCATCTACAAGGCCCCTGATGATGATTCAAATAAAGATTATTCCAACACT
GGCAACACTGAACCAGTATATACCGTCCAAGCCAACATTCTCCACACCAA
TGAGAATCTGTACATGGATGCAGTGACTGCTTTACCAGATACTGTCGCTT
TGAGTCTTGATTTCTTTAACATTGCTAATGAGCTACCACCTCCACCAAGT
TATGCTGAAGCAAGGAGGGATCAAGGTACACCACCTTCTTACATTGAGAT
TGTAGGCATTAGTAACCCATACACATCTTTATAGagatttaaaaaacaaa
acaaaatgaattcATCGTACAAACTACTAGTTTCCACCATATGCATCCTG
GTTTTAGGCCTGGCAGGTCTAATTGTCGGGATGCTGGCTGATCACTGGTT
TCACATCGAAATGCCTGGTGCTTATACGTCAAATTTTGGAATGCTTCGAT
TGTGCATCAGAAAATGGTCATTCGATAATAGATATGAGACTACATGTTCA
CAACGACCTATTCAAACTTTCTCAGACAACACTGTATGGCAACTACCTAT
CGAAGGCGCAGTATTCGATGAGATTCTGACATTACTGATGACGTCAACAT
TGATTGGAGGAGTTGCATTTGCTTTCTTTGCATTCATGGGTTTGACGATG
GAGAAGAAAAGATTCAGATGGAGGTTGACTGGCGTCTTCGGATTCTTCCT
CACGCTCACTGCAGCAATCATAGCCATCACAGCATGTGCCATATCAGAAG
GATAcatccaaaatgaacttttacaTCGTGATTACAATGTGACTGAACAA
TGGACGTCTACTGTCTGTTGGTGTGGTGCAGCATTACTCATCATTGCTTG
TTTAGCTTCACTTTTCGTCATCTACAAGGCCCCTGATGATGATTCAAATA
AAGATTATTCCAACACTGGCAACACTGAACCAGTATATACCGTCCAAGCC
AACATTCTCCACACCAATGAGAATCTGTACATGGATGCAGTGACTGCTTT
ACCAGATACTGTCGCTTTGAGTCTTGATTTCTTTAACATTGCTAATGAGC
TACCACCTCCACCAAGTTATGCTGAAGCAAGGAGGGATCAAGGTACACCA
CCTTCTTACATTGAGATTGTAGGCATTAGTAACCCATACACATCTTTATA
GagatttaaaaaacaaaacaaaatgaattcATCGTACAAACTACTAGTTT
CCACCATATGCATCCTGGTTTTAGGCCTGGCAGGTCTAATTGTCGGGATG
CTGGCTGATCACTGGTTTCACATCGAAATGCCTGGTGCTTATACGTCAAA
TTTTGGAATGCTTCGATTGTGCATCAGAAAATGGTCATTCGATAATAGAT
ATGAGACTACATGTTCACAACGACCTATTCAAACTTTCTCAGACAACACT
GTATGGCAACTACCTATCGAAGGCGCAGTATTCGATGAGATTCTGACATT
ACTGATGACGTCAACATTGATTGGAGGAGTTGCATTTGCTTTCTTTGCAT
TCATGGGTTTGACGATGGAGAAGAAAAGATTCAGATGGAGGTTGACTGGC
GTCTTCGGATTCTTCCTCACGCTCACTGCAGCAATCATAGCCATCACAGC
ATGTGCCATATCAGAAGGATAcatccaaaatgaacttttacaTCGTGATT
ACAATGTGACTGAACAATGGACGTCTACTGTCTGTTGGTGTGGTGCAGCA
TTACTCATCATTGCTTGTTTAGCTTCACTTTTCGTCATCTACAAGGCCCC
TGATGATGATTCAAATAAAGATTATTCCAACACTGGCAACACTGAACCAG
TATATACCGTCCAAGCCAACATTCTCCACACCAATGAGAATCTGTACATG
GATGCAGTGACTGCTTTACCAGATACTGTCGCTTTGAGTCTTGATTTCTT
TAACATTGCTAATGAGCTACCACCTCCACCAAGTTATGCTGAAGCAAGGA
GGGATCAAGGTACACCACCTTCTTACATTGAGATTGTAGGCATTAGTAAC
CCATACACATCTTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046506-exon-scaffold_113-1491911889:218001..218279 | TCONS_00046506-exon-scaffold_113-1491911889:218001..218279 | Clytia hemisphaerica | exon |
| TCONS_00046506-exon-scaffold_113-1510915933:218001..218279 | TCONS_00046506-exon-scaffold_113-1510915933:218001..218279 | Clytia hemisphaerica | exon |
| TCONS_00046506-exon-scaffold_113-1575043694:218001..218279 | TCONS_00046506-exon-scaffold_113-1575043694:218001..218279 | Clytia hemisphaerica | exon |
| TCONS_00046506-exon-scaffold_113-1491911889:220186..220338 | TCONS_00046506-exon-scaffold_113-1491911889:220186..220338 | Clytia hemisphaerica | exon |
| TCONS_00046506-exon-scaffold_113-1510915933:220186..220338 | TCONS_00046506-exon-scaffold_113-1510915933:220186..220338 | Clytia hemisphaerica | exon |
| TCONS_00046506-exon-scaffold_113-1575043694:220186..220338 | TCONS_00046506-exon-scaffold_113-1575043694:220186..220338 | Clytia hemisphaerica | exon |
| TCONS_00046506-exon-scaffold_113-1491911889:221019..221182 | TCONS_00046506-exon-scaffold_113-1491911889:221019..221182 | Clytia hemisphaerica | exon |
| TCONS_00046506-exon-scaffold_113-1510915933:221019..221182 | TCONS_00046506-exon-scaffold_113-1510915933:221019..221182 | Clytia hemisphaerica | exon |
| TCONS_00046506-exon-scaffold_113-1575043694:221019..221182 | TCONS_00046506-exon-scaffold_113-1575043694:221019..221182 | Clytia hemisphaerica | exon |
| TCONS_00046506-exon-scaffold_113-1491911889:221690..222614 | TCONS_00046506-exon-scaffold_113-1491911889:221690..222614 | Clytia hemisphaerica | exon |
| TCONS_00046506-exon-scaffold_113-1510915933:221690..222614 | TCONS_00046506-exon-scaffold_113-1510915933:221690..222614 | Clytia hemisphaerica | exon |
| TCONS_00046506-exon-scaffold_113-1575043694:221690..222614 | TCONS_00046506-exon-scaffold_113-1575043694:221690..222614 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_113 | supercontig | scaffold_113:218001..222614 + |
Blast
The following BLAST results are available for this feature:
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