TCONS_00046476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046476
Unique NameTCONS_00046476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length858

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046476 ID=TCONS_00046476|Name=TCONS_00046476|organism=Clytia hemisphaerica|type=transcript|length=858bp
AACCGCCTCAGCATGGAAAAATTCCCAGGGAACAACAATCGGGGGTATTG
GTATGCTACTCTCTTCTAGAGCAGCAGAAAATCTTTTATCTCTCCGATAG
CAACCCTAAAACAACCTTTGTAGCTTGTTACAGTCCAACTAATGTCTCTG
AACAGGTTGATGTCGATAGTTTCTATTCCATTCTTTCTCAAACTATCCTT
TCTATTCCTGCGCATAACTTTCTTATATTAGCTGGCGACTTTAATGCCAA
GTTAGGGAATGATAATGTAAAATTTTCATACCATAAATCGACAAATAGAA
ATGGTAATAATTCTTTGATTTTATGTTACAACATCAGCTTGTTGCTACAA
ATacactttttatgaaaaatactaATAAGCTCTGGACTTTCCATCATCCC
TCTGGAACTAAATCCCAAATAGACTATGTCCTTGTCCGAAATAAATGGAA
AAACAGTGTCAGAAATGCtcaatcatatttttctttttcttctgttgGCT
CAGACCACGGAGTCGTTTCTGCACACATTTGTCTAAGTTTGAGATCTTCT
AAAAAGTGCAAACCCAACCCTCTGAAATCTATTGATTGGCAACAAGTTTA
TACAAGTTCTGCGGTTGAAGTGAAACATAGATTTGACCTCCTCTCTCGTC
CCGATCACAATATTGAAGAGAAATACCAAACTTTGGTAGACGCAAATGAA
CATGTCTGTCTCTCTCTTTtgccaaaaaagttaaaaccaaAAGAACACAC
CTGTCTGAAAATGATCTTGTCATCGCAGCACGCAATGAATACGATAAAGT
CAAAGCAAGGCACCTATCTCGCGCAACCAGAAGAACCTCAAAACGCCTTG
CTGACGNN
Run BLAST on NCBI

protein sequence of TCONS_00046476-protein

>TCONS_00046476-protein ID=TCONS_00046476-protein|Name=TCONS_00046476-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MLQHQLVATNTLFMKNTNKLWTFHHPSGTKSQIDYVLVRNKWKNSVRNAQ
SYFSFSSVGSDHGVVSAHICLSLRSSKKCKPNPLKSIDWQQVYTSSAVEV
KHRFDLLSRPDHNIEEKYQTLVDANEHVCLSLLPKKLKPKEHTCLKMILS
SQHAMNTIKSKQGTYLAQPEEPQNALLT
Run BLAST on NCBI

transcript from alignment at scaffold_110:239909..240766

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046476 ID=TCONS_00046476|Name=TCONS_00046476|organism=Clytia hemisphaerica|type=transcript|length=858bp|location=Sequence derived from alignment at scaffold_110:239909..240766 (Clytia hemisphaerica)
NNCGTCAGCAAGGCGTTTTGAGGTTCTTCTGGTTGCGCGAGATAGGTGCC
TTGCTTTGACTTTATCGTATTCATTGCGTGCTGCGATGACAAGATCATTT
TCAGACAGGTGTGTTCTTttggttttaacttttttggcaAAAGAGAGAGA
CAGACATGTTCATTTGCGTCTACCAAAGTTTGGTATTTCTCTTCAATATT
GTGATCGGGACGAGAGAGGAGGTCAAATCTATGTTTCACTTCAACCGCAG
AACTTGTATAAACTTGTTGCCAATCAATAGATTTCAGAGGGTTGGGTTTG
CACTTTTTAGAAGATCTCAAACTTAGACAAATGTGTGCAGAAACGACTCC
GTGGTCTGAGCcaacagaagaaaaagaaaaatatgattgaGCATTTCTGA
CACTGTTTTTCCATTTATTTCGGACAAGGACATAGTCTATTTGGGATTTA
GTTCCAGAGGGATGATGGAAAGTCCAGAGCTTATtagtatttttcataaa
aagtgtATTTGTAGCAACAAGCTGATGTTGTAACATAAAATCAAAGAATT
ATTACCATTTCTATTTGTCGATTTATGGTATGAAAATTTTACATTATCAT
TCCCTAACTTGGCATTAAAGTCGCCAGCTAATATAAGAAAGTTATGCGCA
GGAATAGAAAGGATAGTTTGAGAAAGAATGGAATAGAAACTATCGACATC
AACCTGTTCAGAGACATTAGTTGGACTGTAACAAGCTACAAAGGTTGTTT
TAGGGTTGCTATCGGAGAGATAAAAGATTTTCTGCTGCTCTAGAAGAGAG
TAGCATACCAATACCCCCGATTGTTGTTCCCTGGGAATTTTTCCATGCTG
AGGCGGTT

Coding sequence (CDS) from alignment at scaffold_110:239909..240766

>TCONS_00046476 ID=TCONS_00046476|Name=TCONS_00046476|organism=Clytia hemisphaerica|type=CDS|length=534bp|location=Sequence derived from alignment at scaffold_110:239909..240766 (Clytia hemisphaerica)
CGTCAGCAAGGCGTTTTGAGGTTCTTCTGGTTGCGCGAGATAGGTGCCTT
GCTTTGACTTTATCGTATTCATTGCGTGCTGCGATGACAAGATCATTTTC
AGACAGGTGTGTTCTTttggttttaacttttttggcaAAAGAGAGAGACA
GACATGTTCATTTGCGTCTACCAAAGTTTGGTATTTCTCTTCAATATTGT
GATCGGGACGAGAGAGGAGGTCAAATCTATGTTTCACTTCAACCGCAGAA
CTTGTATAAACTTGTTGCCAATCAATAGATTTCAGAGGGTTGGGTTTGCA
CTTTTTAGAAGATCTCAAACTTAGACAAATGTGTGCAGAAACGACTCCGT
GGTCTGAGCcaacagaagaaaaagaaaaatatgattgaGCATTTCTGACA
CTGTTTTTCCATTTATTTCGGACAAGGACATAGTCTATTTGGGATTTAGT
TCCAGAGGGATGATGGAAAGTCCAGAGCTTATtagtatttttcataaaaa
gtgtATTTGTAGCAACAAGCTGATGTTGTAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029661XLOC_029661Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046476-proteinTCONS_00046476-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046476-exon-scaffold_110-1491911889:239909..240766TCONS_00046476-exon-scaffold_110-1491911889:239909..240766Clytia hemisphaericaexon
TCONS_00046476-exon-scaffold_110-1510915933:239909..240766TCONS_00046476-exon-scaffold_110-1510915933:239909..240766Clytia hemisphaericaexon
TCONS_00046476-exon-scaffold_110-1575043694:239909..240766TCONS_00046476-exon-scaffold_110-1575043694:239909..240766Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_110supercontigscaffold_110:239909..240766 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29075	0.749846	1.71446	2.66661	2.87273	2.376	1.56737	1.74268	0.572575	0.440503	1.29687	0.56047	0.889741	0.641855	0.290472	0.687458	0.312477	0.210308	0.290552	0.0608083	0.610293	0.618722	0.357214	0.241855	1.93682	2.33107	0.108546	0.239988	0.182022	0.221308
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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