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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046372 ID=TCONS_00046372|Name=TCONS_00046372|organism=Clytia hemisphaerica|type=transcript|length=3654bpRun BLAST on NCBI protein sequence of TCONS_00046372-protein >TCONS_00046372-protein ID=TCONS_00046372-protein|Name=TCONS_00046372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp MMRAPGEVMAENRPSPTLGRRTLSNGSTSSTNDLSPASQRKDLTNAANGARun BLAST on NCBI transcript from alignment at scaffold_109:260881..291309+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046372 ID=TCONS_00046372|Name=TCONS_00046372|organism=Clytia hemisphaerica|type=transcript|length=30429bp|location=Sequence derived from alignment at scaffold_109:260881..291309+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_109:260881..291309+ >TCONS_00046372 ID=TCONS_00046372|Name=TCONS_00046372|organism=Clytia hemisphaerica|type=CDS|length=8874bp|location=Sequence derived from alignment at scaffold_109:260881..291309+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00046372 vs. Swiss-Prot (Human)
Match: ASPP1 (Apoptosis-stimulating of p53 protein 1 OS=Homo sapiens GN=PPP1R13B PE=1 SV=3) HSP 1 Score: 237.269 bits (604), Expect = 7.042e-64 Identity = 105/200 (52.50%), Postives = 145/200 (72.50%), Query Frame = 3
Query: 2406 VILDPFALLLDSALEGEMEMVKRTLMQVPDPSRPNPEGITALHNAVCGNHKEVVRYLVEVACDINAADNNGWTPLHCAAFYNDTELCRYLVESGASVFATTYTDYQTPAHKCSRLDDHYDECFAYLHECKENVGRIDAGLVHALYDYEGQYEDELSFYCGDELTILRRGDNSEKEWWWARDCKGNMGYIPCNLVGNYHRI 3005
V +P ALLLD++LEGE ++V+R + +V DPS+PN EGIT LHNAVC H +V++L++ ++NAAD++GWTPLHCAA N LC+ LVESGA++FA+T +D +T A KC +++ Y +C +L+ +E +G ++ G+ +AL+DYE Q DELSF+ GD LTILRR D SE EWWWAR GY+P NL+G Y RI
Sbjct: 884 VRFNPLALLLDASLEGEFDLVQRIIYEVEDPSKPNDEGITPLHNAVCAGHHHIVKFLLDFGVNVNAADSDGWTPLHCAASCNSVHLCKQLVESGAAIFASTISDIETAADKCEEMEEGYIQCSQFLYGVQEKLGVMNKGVAYALWDYEAQNSDELSFHEGDALTILRRKDESETEWWWAR-LGDREGYVPKNLLGLYPRI 1082 The following BLAST results are available for this feature:
BLAST of TCONS_00046372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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