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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046369 ID=TCONS_00046369|Name=TCONS_00046369|organism=Clytia hemisphaerica|type=transcript|length=1223bp
AAATTTTATAAATTCTGCCATCTGCCAAATAAAATACGCATTAAAAATCG
CATTTGGCAAACCGCTGTACACaccaaaattaatacacttaagGTATTAG
TAAAANcgttctcctacgcagctcctattttagcaaacgcccgccgcctt
tatgttcccgccctctgacatgattaattaacagactagtttgctagtct
aggaATAAAACTGTACAATTATAGAGATTTTTATATAAGAGACTATTTCC
TAAGCCCGCGCCGTTTAGTCAAGTCCTCATCAGTATCTTCCTGTATTCTC
GGAGTCCATCCACCTGGTTCCGTTGACGTCCTCGATCCTGTATAAGACGT
TGTAGAGCCAGTTGAAGAAGTGCCATCAGAAGTAGTTGAGTATTCATCAC
CTGAACGAATGGTGGAGGTAGGCGAGCTGCGAGTTTTGTAAGAACTTGGA
GCACTATCAACATACGACGATGTCTCTGAATAGTCTGGAGATTCAGGTTG
CATTGAGCCTGCGTGAACCTCCATACTGGTGGCCGGCTTTTGCTCTTCTT
CGTCCCCCTCGTCTATAGGAGAGACTATCTTCCTCCTACGAGGAATACCT
TTATTTCCCCTCCGCTGAGGGTTCTTATTGTCTATAAAAGGATCCCATTC
CATTGAACTTGCTTGAGTCAGATTATTTGGCATGACTTGCCTGTCTATAT
TGTCTGGGTTATAAGGTTTATGAAATAACGGTTTAGTAGGCTCCCGGTGT
ATTGTTTCCGGTGACGAATCAGTGGACCCGTCGTCCGTTAGTAAAGACGC
CGGTAAAGCCGACATTGTTTTAGGAATATTTTTAGGgattatttgatttg
gttgttgTTGCTGTGATAAAGGTTCGTATTGACGTTTCTGTATCAATCGT
GGTGATAATTTTTCCGGTGTTGCAATATTTTGTGATTCAGGGTTGACGGT
TGACGGAACGATGGTCGAACCGAAAATCGATTCCCGGCTGGTGTCAGGTG
GTCTTGCATTGGAACTGGTGAAGTTGTAAGGTTGAATGTAGTCTTTGAAT
AATAACGCTTTCTCTTTCATTAATAATTCTCTGGGATGGTGAGCATGGCT
TCGGAGCTTTCGCCAACCAGGAGCGTCGCTCGGCTCTGGTGATGTCTGTA
AAAACAAAGAAGTAAAGTTAGTGGTATGCTTCGATATGTTTAGATCACAA
TGCCGAATTGAGAAAAGAATTAC Run BLAST on NCBI transcript from alignment at scaffold_109:166963..168252+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046369 ID=TCONS_00046369|Name=TCONS_00046369|organism=Clytia hemisphaerica|type=transcript|length=1290bp|location=Sequence derived from alignment at scaffold_109:166963..168252+ (Clytia hemisphaerica)
AAATTTTATAAATTCTGCCATCTGCCAAATAAAATACGCATTAAAAATCG
CATTTGGCAAACCGCTGTACACaccaaaattaatacacttaagGTATTAG
TAAAANcgttctcctacgcagctcctattttagcaaacgcccgccgcctt
tatgttcccgccctctgacatgattaattaacagactagtttgctagtct
aggaATAAAACTGTACAATTATAGAGATTTTTATATAAGAGACTATTTCC
TAAGCCCGCGCCGTTTAGTCAAGTCCTCATCAGTATCTTCCTGTATTCTC
GGAGTCCATCCACCTGGTTCCGTTGACGTCCTCGATCCTGTATAAGACGT
TGTAGAGCCAGTTGAAGAAGTGCCATCAGAAGTAGTTGAGTATTCATCAC
CTGAACGAATGGTGGAGGTAGGCGAGCTGCGAGTTTTGTAAGAACTTGGA
GCACTATCAACATACGACGATGTCTCTGAATAGTCTGGAGATTCAGGTTG
CATTGAGCCTGCGTGAACCTCCATACTGGTGGCCGGCTTTTGCTCTTCTT
CGTCCCCCTCGTCTATAGGAGAGACTATCTTCCTCCTACGAGGAATACCT
TTATTTCCCCTCCGCTGAGGGTTCTTATTGTCTATAAAAGGATCCCATTC
CATTGAACTTGCTTGAGTCAGATTATTTGGCATGACTTGCCTGTCTATAT
TGTCTGGGTTATAAGGTTTATGAAATAACGGTTTAGTAGGCTCCCGGTGT
ATTGTTTCCGGTGACGAATCAGTGGACCCGTCGTCCGTTAGTAAAGACGC
CGGTAAAGCCGACATTGTTTTAGGAATATTTTTAGGgattatttgatttg
gttgttgTTGCTGTGATAAAGGCTCGTATTGACGTTTCTGTATCAATCGT
GGTGATATTTTTTCCGGTGTTANGTTGCTGTGATAAAGGTTCGTATTGAC
GTTTCTGTATCAATCGTGGTGATAATTTTTCCGGTGTTGCAATATTTTGT
GATTCAGGGTTGACGGTTGACGGAACGATGGTCGAACCGAAAATCGATTC
CCGGCTGGTGTCAGGTGGTCTTGCATTGGAACTGGTGAAGTTGTAAGGTT
GAATGTAGTCTTTGAATAATAACGCTTTCTCTTTCATTAATAATTCTCTG
GGATGGTGAGCATGGCTTCGGAGCTTTCGCCAACCAGGAGCGTCGCTCGG
CTCTGGTGATGTCTGTAAAAACAAAGAAGTAAAGTTAGTGGTATGCTTCG
ATATGTTTAGATCACAATGCCGAATTGAGAAAAGAATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046369-exon-scaffold_109-1491911889:166963..167833 | TCONS_00046369-exon-scaffold_109-1491911889:166963..167833 | Clytia hemisphaerica | exon |
| TCONS_00046369-exon-scaffold_109-1510915933:166963..167833 | TCONS_00046369-exon-scaffold_109-1510915933:166963..167833 | Clytia hemisphaerica | exon |
| TCONS_00046369-exon-scaffold_109-1575043694:166963..167833 | TCONS_00046369-exon-scaffold_109-1575043694:166963..167833 | Clytia hemisphaerica | exon |
| TCONS_00046369-exon-scaffold_109-1491911889:167901..168252 | TCONS_00046369-exon-scaffold_109-1491911889:167901..168252 | Clytia hemisphaerica | exon |
| TCONS_00046369-exon-scaffold_109-1510915933:167901..168252 | TCONS_00046369-exon-scaffold_109-1510915933:167901..168252 | Clytia hemisphaerica | exon |
| TCONS_00046369-exon-scaffold_109-1575043694:167901..168252 | TCONS_00046369-exon-scaffold_109-1575043694:167901..168252 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_109 | supercontig | scaffold_109:166963..168252 + |
Blast
The following BLAST results are available for this feature:
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