TCONS_00046360 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046360
Unique NameTCONS_00046360
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046360 ID=TCONS_00046360|Name=TCONS_00046360|organism=Clytia hemisphaerica|type=transcript|length=1479bp
GGACCATGAAATGAAACTGATAAAAATTCgttcttcaattttttctctAC
TTCACTTACCTCTCAACAACTTGTTCTGTTAAACGTAATAATATGATCAG
GGAAGAGCGCACACCAACTTGTAATTTCTTTTGCCGTTCGAAAAAGAACA
AGAACGACCGCGGAACATCAGTCCGTAAGAAGTTATTGTGTGCTCCTACC
AAATCACAACACCAACGACTGCCCAATTATCCAAAAGAGCCTGAACTCAA
CAAAACACTCGACATGAGTAACATCGTACCACCTTTACCATCAGAACCGA
ACTCCCCGATGAGTACGCTGCAACGAACCCCCCGAACACCCCGAATGATG
AACGGTAGCAACAGTCAGTATTCCACCTTACAACGTGGTATGTCAGGGGG
TCAACAAAGCCAATTCTCCACCCTACAACGCAATAGAAAAACGTCAGATG
GGCAATACAGTGGACCCCCGTCTCCAATGTCCAACATGCCAAGGAATGAC
GACGAACACGCCCTTATTGTTATGTACGCACAAAAACTGGCAACTGCACG
AAACGAACAGGAAGCGAACTTGCGGAACAAAAAGCTTTCCACTTCTTCCG
AACCTTCCAACCAACAAAAAGAAATCTTGACCAACCTCGAAGAAAAAAAC
AGATCTCTCTTGAATGAAATTCGCAAGTTGAAGCAGGAGCATGAAGAAGC
CGTTAAAAATGCTCAACAAATGGGTTGTGATCCTAACCTGTTAACAGAAC
TCCGCGTTCTCCGTCAACGCAAAGACGAATTAGAGATGCGAATGTCCGCG
CTACAAGAAACGCGGAGAGAATTGATGGTACAATTAGAAGGACTCATGAA
ACTCCTCAAGAATTCAGAAAATGGTACTATAACTGTCCTCCCCATTCAAC
CTGAAGCTTAAACGTATTGCTACCGAACGGCACGGAAAGCGTACACTCGA
AGGAGGACGCTCGTCAAAGACGAAAGACGATAGTAAAGAAAGCAAGATTT
TAAAAAGCATTAACTTTGATTAATTCCATCATTAAATAATAAACTACAAA
AGGAACCTTAGCCGCGCGTGCTAACTTCTAAAGAATGTAGAATAGTTTGA
AATGAACTTAGAAATTAGCGATGGAGAGTTTGGCCTCCGTCTACACAGTA
TCGCGTAACAAATGTCGTTCTTGATGCATCACCGAAATAGAGAACGAACT
TTGTAGATAATGGTATGGAATCGCATGAGTAGCAATGTGCAATGAAGGAA
TCAAGTATTAACATGGAATTTATTCCAGTGTCTTCCAACATACAAATTTA
TAACCTGGTataactcttttcaaaaaagcaagatttttttctcggaATAG
AATTTGTATGGTTACAGTATTAGTTCTGAACGAGGGTTATTTTGAAGTCC
TCGTATTTATAATACCCATTtctcaatagacgatatcggcttaacgtgaa
aactcagatttgacccccgagaattcccc
Run BLAST on NCBI

transcript from alignment at scaffold_109:107446..113783+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046360 ID=TCONS_00046360|Name=TCONS_00046360|organism=Clytia hemisphaerica|type=transcript|length=6338bp|location=Sequence derived from alignment at scaffold_109:107446..113783+ (Clytia hemisphaerica)
GGACCATGAAATGAAACTGATAAAAATTCgttcttcaattttttctctAC
TTCACTTACCTCTCAACAACTTGTTCTGTTAAACGTAATAATATGATCAG
GGAAGAGCGCACACCAACTTGTAATTTCTTTTGCCGTTCGAAAAAGGTGA
GATCAAACGGGACTCAACGATATCTATCGGACAGGGTGAACCAGTACTTT
TTTATGTgatgtgtattttttaattgtCGTTAATTTGAAGCTTTAGTTAA
TGGATCCACTCTTCGTCTACCGGTTACAAAGGTGTTCATTACAAAAATGA
TTGGTCtgtgaatttccatgaagtatTTGACTAGACATTTTTCCGTTCTT
CATTATACAATTGAAACAGATTACGAAATGACGCCCTATAATGAGCGCTA
TCCGGATATACGAGTTGACACTTTGATGACCGAAACTttagagtcgatat
ttttagTTGGATAGCCTGGTATTCTAGGACTTTTCGACGATTTTTTTTCA
CGGGATCGACGACCAGCCGGCCCGGCTCGGCTTGGGTCGGCTCGGCTATC
TTTGAACTGAACGACATTTGAAGAAGCGGTGATTCGAACCGCGAATCCCT
GGTTTCAGGTGCTGACGTCTTGATCAATCAGCCATTGCTCTTTAATTAAT
TATGTTCTTTTTACTAACATACAAACAAACCCAAAAGGTTCTTACCCTCC
AACTACTATAACCTTGATTTGTTTCTTCCTTTAGAACAAGAACGACCGCG
GAACATCAGTCCGTAAGAAGTTATTGTGTGCTCCTACCAAATCACAACAC
CAACGACTGCCCAATTATCCAAAAGAGCCTGAACTCAACAAAACACTCGA
CATGAGTAACATCGTGTAAGAATTTCCACAGTTTTGACATTAGCTAAATT
TCGCTTATTATTCTTGGTCATCATTTAATTCACATCGTCATATCTCAAGC
TCATCAATCAGGTTAGCTCAGGGGTTTTGATTTTGTTCTTCAAGGTAACT
GTGTTTGCTGTCGAAGTGAGTTTACAGCTTGTAGAGTAACCGTCCTGGTA
GCTTCATTTAGAGGGATTTATCCAGGATATTTTGGTTTGAAAAGTTAGGC
AATTTTCCTCATTCTTTGAATGGAGACCTCTTGATCatataatcagataa
aataTTATTCTTGTTATGTTTTCTTTTCCTACAGACCACCTTTACCATCA
GAACCGAACTCCCCGATGAGTACGCTGCAACGAACCCCCCGAACACCCCG
AATGATGAACGGTAGCAACAGTCAGTATTCCACCTTACAACGTGGTATGT
CAGGGGGTCAACAAAGCCAATTCTCCACCCTACAACGCAATAGAAAAACG
TCAGATGGGCAATACAGTGGACCCCCGTCTCCAATGTCCAACATGCCAAG
GTAACCTACTGTTTCCAACAAAAAGGGTAGTGAAGGATCAATAGATTGCT
GATGGACCATAATTtcgtgagtgagtgagtgagtgagtgagcaAAAGGTG
TGTAAACGTCGCTTTGGAAAATTAGCTAGTTCGAAAACAAGGTATGGTAC
GATTTTGATAAACCTCTAGAAAAGTTTATATAGAGTAAAGAAACGCGCAT
GGATGCATGGTTTTACACGTACACTTCCTTACACTTTAGGAATGACGACG
AACACGCCCTTATTGTTATGTACGCACAAAAGTATGTATACATTTTCAAT
TTCCTCATATTTATTGGTAGCATGTCCATCGGTGTATGTAGTACAAATGC
ACAATACTTGATACCTTATACACTAAATTCTCGCTTATCTAAACTTCtaa
tattcgaatctttctataattagAACTTGCTTCCAGTCCCCGCCAAGGAT
AAAACCTCTTAAGAAATTTTATTCCACAAAGAACCTTtaatttaaagctt
tttctccCACTTCTAGACTGGCAACTGCACGAAACGAACAGGTATGTTTT
gaacttttcaatatttttttctgtgatcttTAAGTTACCATACTCCTGTG
TTGATAAAGTGACCGTAGTGcatagagcatccggctacggcgCACAAGAT
CGTGGGTTCAATCACTGACCAGGTCATACCGAATTATTCGTTCTTAGTAC
AAAGAAATGACACTTGATGCCCCTCTACTTGATGCTCAGTAATTAGAGGG
TCAAGGTTAAGTGGAGCAATTCAGGGAGGAAGAGTAGCGCCATCCCCTTT
CTTTGATTacatagctatcgaaagaggagccttcgggtttTGTTGATGTA
TAAAATGGAGCAAAGCAGAACAAATCCTGTCATATACACCTATTAACCCT
AACTCGTAAGAGGGTTGGAATCAAGTCTAATAGGGTCAAGTGACGCCATA
CGTTTTTACGTGTAAGCGCGTCAATCTAATTTAACGTCATTCAACCCTAG
TGATGTAGTGGTGTGGTGGTCATCGCTCTTGACTCCCGTCTGGGAGACCC
GAGTTGGAAGACCCGAGATTCCCACTGTAGTACTACGGTTCGNGTGGTCA
TCGCTCTTGACTCCCGTCTGGGAGACccgagttcgattcccactgtAGTA
CTACGGTTCGCTTGGCAAATGAACacaccttcgcccgggtcaacccatac
catgtgaggggaattgggtaccactactctgatacaagagtgtgggtgat
aTGCCGGGCATTGTGGTGTGTGGTGTCACTCATCCCGTTCCGCGCCTGCG
ACGAGCTATATGCTCTCCCGCGTGGTTCGAGTGTCATCACTATGCATCAT
GGTATCTGTGTCTCGCGTGCACAGAACCAACGGTGTCTGGACAGCGCTAA
GTGTTCCAAATCGAAAGAGGAGGAATTCCTACTTTGCAAGGAGTAGGATC
CAGTCCCCAgtggggagggctcatatcatatCATTCAACCCTAGTAAACT
AGTACTGAATCTCCTCCTGTAGGCAGCAGCCTTTTACACAAGAGTTGATA
GATTTATTTTCGTATTCGACTTTCAGGAAGCGAACTTGCGGAACAAAAAG
CTTTCCACTTCTTCCGAACCTTCCAACCAACAAAAAGAAATCTTGACCAA
CCTCGAAGAAAAAAACAGGTGAAATATATTCCactttttcgttatttttc
aaaCATCTTTGAATACTCCGTTTATGGACTTATTGGCTGGTTATATTtga
ttgaaactttctttttgaCGTCGTATGATCCAGCAATATGATTTGTTAAA
ACAGATTTGATGTACACGTTACTTTTTTATCTTAACCAATAGCCCtttga
cccaataagcataagTATCGTATAATATCAAGAGTGGTCAAAgcaaactt
tcaaaaatgagctagaatgcaaATTAACCGCCCAAGGACTGACCCCAAAA
TAGGAGTGTCTTATAAAAAGACACACACCTTCCAAATATACCTCCATATG
ACAGTTCCTGATACTGAAATTTGTATTCCGTAATTTTGTATCATTTGTgt
ttattttaactaaaataatttttgttcaaCAATACTTAATATTAACCTTT
CTCATCCTCAGATCTCTCTTGAATGAAATTCGCAAGTTGAAGCAGGAGCA
TGAAGAAGCCGTTAAAAATGCTCAACAAATGGGTTGTGATCCTAACCTGT
TAACAGAACTCCGCGTTCTCCGTCAACGCAAAGACGAATTAGAGATGCGA
ATGTCCGCGCTACAAGAAACGCGGAGAGAATTGATGGTACAATTAGAAGG
ACTCATGAAACTCCTCAAGGTAGGAAATCCTCTTTATTTCATGTTTCATT
TCTCCAGTGGCAAATTGGTATAGAGGTTTTTCAAGTTGAATAAGTTACGT
aaattccgccattatggaaacaaAGCAACCANGAGGTTTTTCAAGTTTAA
GTTACGTAAATTCCGCTATTATGGAAACAAAGCAACCAATTAGACGTTCG
ATTTACGTAAGGAGTCGCCTCtacaaattcgaacgtttgatttccataat
ggtggattaccttaagttacgtaactttttcaaattatgaAAAGCAGCTa
taattcttgatattcatgacttTATACGGATAGAATTCATGTTATTCATC
ACTTTAACATTTCctaacattacatcacagaCCCACAAGCTGATTGGCTG
CCAGTGACGTATTGACTCATTTTATAACACACTCAACCAATTAACTGTTG
GGTCTATAATGTAATATctcagctgacacacaacgttgtttctacGTTCA
TTTAAcattaaatggacgttgtgaatattaAATTGACGttaaaacaatgt
tgtgtgccagctaggaTCAGAAGATATTTCATGAATTGTAGTTATGGTTG
AACTACGATTGATAACTCGTAACTCTGAACTAACACTGAAAAGTTTAaac
taacaaaatactaaacaTTAACAATTAACCGATCCTAACCTCATCCACCT
TAAAAGTCTTTTGAATGACCAAATGTATACATTACTGATTTATAATGGAA
AGATTTGAAAACTGGTGCAAACCACCTTTTAACCTTCTAACATTCAATGT
TTGAAAATCTTGCTTTCTGTTAACtaaaaccatgaacatataaacgactg
gacatccatctccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctaacaacg
tcaaaacttcgacaaaagtctctgttgttctaatcttctcaagtctttta
tctatatcataacaaagataacagaggcaaaattaTCGTCAGTTATCtat
cagcttgtcaaaactccgactaatatttctaaattttgacttaaaagtgt
ctaataattttagagagtgtcacattctaatttcgatattcttattaaac
aggctctcaactttggcaagctatttcttttaagtcataaaaaaaattat
tggagtgacaaaagggatagaaaagtatacacgcagttgaaattctgcat
ttcagagttgaaaatgttgatgaaatatattacaaacttgtaaaaaaatt
cgaaaataatttatttgtacattatgagtaatgttcaagctctatcaatc
tttttacctaaaaaaatcaaagaaataaaattatgacggagtattatcgg
atttttcataccaattttgaaatacaggcggcaacgaagctcgtttcaaa
gagacaataaaagatagatgtccagccGTTTATATGTTTATGCCAAAACT
TCCTCCAAATTTCTTTTCTCTCTCTACTCTAAGAAGCCCCGGATATtcaa
ttcacgccatcacgcaattTATTCTTTTCCAAATTCACGTATTGACGAAA
TTTTTCTCGAATAATTTCACGCATTTCTtgttttccaattcacgcattta
cgcagcttttttgaaatgttcacacattcacgcgagtgaaaaaagctttt
tcatgcattcacgcaaaGCGCTGGGGGGCATATAACTTCAATCTCTCCAA
ACTAAATCTCACAACTTACTAACCGTTTACTTACACAATGACGTCACGAC
TGAAAGAAACTAATCTTTACTTCAATTTCGAAACATTTTTCTCAATCCAT
CTTTCCTCGTTTTTCGTAGAATTCAGAAAATGGTACTATAACTGTCCTCC
CCATTCAACCTGAAGCTTAAACGTATTGCTACCGAACGGCACGGAAAGCG
TACACTCGAAGGAGGACGCTCGTCAAAGACGAAAGACGATAGTAAAGAAA
GCAAGATTTTAAAAAGCATTAACTTTGATTAATTCCATCATTAAATAATA
AACTACAAAAGGAACCTTAGCCGCGCGTGCTAACTTCTAAAGAATGTAGA
ATAGTTTGAAATGAACTTAGAAATTAGCGATGGAGAGTTTGGCCTCCGTC
TACACAGTATCGCGTAACAAATGTCGTTCTTGATGCATCACCGAAATAGA
GAACGAACTTTGTAGATAATGGTATGGAATCGCATGAGTAGCAATGTGCA
ATGAAGGAATCAAGTATTAACATGGAATTTATTCCAGTGTCTTCCAACAT
ACAAATTTATAACCTGGTataactcttttcaaaaaagcaagatttttttc
tcggaATAGAATTTGTATGGTTACAGTATTAGTTCTGAACGAGGGTTATT
TTGAAGTCCTCGTATTTATAATACCCATTtctcaatagacgatatcggct
taacgtgaaaactcagatttgacccccgagaattcccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029594XLOC_029594Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046360-exon-scaffold_109-1491911889:107446..107591TCONS_00046360-exon-scaffold_109-1491911889:107446..107591Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1510915933:107446..107591TCONS_00046360-exon-scaffold_109-1510915933:107446..107591Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1575043694:107446..107591TCONS_00046360-exon-scaffold_109-1575043694:107446..107591Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1491911889:108180..108310TCONS_00046360-exon-scaffold_109-1491911889:108180..108310Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1510915933:108180..108310TCONS_00046360-exon-scaffold_109-1510915933:108180..108310Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1575043694:108180..108310TCONS_00046360-exon-scaffold_109-1575043694:108180..108310Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1491911889:108630..108845TCONS_00046360-exon-scaffold_109-1491911889:108630..108845Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1510915933:108630..108845TCONS_00046360-exon-scaffold_109-1510915933:108630..108845Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1575043694:108630..108845TCONS_00046360-exon-scaffold_109-1575043694:108630..108845Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1491911889:109085..109126TCONS_00046360-exon-scaffold_109-1491911889:109085..109126Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1510915933:109085..109126TCONS_00046360-exon-scaffold_109-1510915933:109085..109126Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1575043694:109085..109126TCONS_00046360-exon-scaffold_109-1575043694:109085..109126Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1491911889:109362..109386TCONS_00046360-exon-scaffold_109-1491911889:109362..109386Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1510915933:109362..109386TCONS_00046360-exon-scaffold_109-1510915933:109362..109386Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1575043694:109362..109386TCONS_00046360-exon-scaffold_109-1575043694:109362..109386Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1491911889:110422..110513TCONS_00046360-exon-scaffold_109-1491911889:110422..110513Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1510915933:110422..110513TCONS_00046360-exon-scaffold_109-1510915933:110422..110513Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1575043694:110422..110513TCONS_00046360-exon-scaffold_109-1575043694:110422..110513Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1491911889:110957..111164TCONS_00046360-exon-scaffold_109-1491911889:110957..111164Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1510915933:110957..111164TCONS_00046360-exon-scaffold_109-1510915933:110957..111164Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1575043694:110957..111164TCONS_00046360-exon-scaffold_109-1575043694:110957..111164Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1491911889:113165..113783TCONS_00046360-exon-scaffold_109-1491911889:113165..113783Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1510915933:113165..113783TCONS_00046360-exon-scaffold_109-1510915933:113165..113783Clytia hemisphaericaexon
TCONS_00046360-exon-scaffold_109-1575043694:113165..113783TCONS_00046360-exon-scaffold_109-1575043694:113165..113783Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:107446..113783 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.89209e-08	0	2.12984	0	2.87511	2.45152	10.384	18.9579	12.4641	17.0593	9.52359	14.5557	1.14919	1.10065	0	0	2.94136	2.13412	10.9188	11.3883	6.99991	7.98419	2.78513	5.00928	9.89376	6.96169	0	3.30733e-05	1.21051	1.87463
Blast
[Close]
BLAST of TCONS_00046360 vs. Swiss-Prot (Human)
Match: DTNB (Dystrobrevin beta OS=Homo sapiens GN=DTNB PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.191e-30
Identity = 97/253 (38.34%), Postives = 134/253 (52.96%), Query Frame = 3 
Query:  168 SVRKKLLCAPTKSQHQRLPNYPKEPELNKTLDMSNIVPPLP-------------SEPNSPMSTLQRTPRTPRMMNGSNSQYSTLQRGMSGGQQSQFSTLQRNRKTSDGQYSGPPSPMSNMPRNDDEHALIVMYAQKLATARNEQEANLRN--KKLSTSSEPSNQQKEILTNLEEKNRSLLNEIRKLKQEHEEAVK----NAQQMGCDPNLLTELRVLRQRKDELEMRMSALQETRRELMVQLEGLMKLLKNSE 869
            ++ K L C PT+      P +P++PE  K LD+++IVPP P             S   +P   LQ +   P  +   ++  +           S  + LQ   +  D      PS      R D+EH LI  YA +LA     +  N+      LS + + + QQ++++  LE KNR +L EI++L+ EHE+A +     AQQ   +P LL ELR+LRQRKDELE RMSALQE+RRELMVQLE LMKLLK  E
Sbjct:  302 AISKSLGCVPTREPPH--PVFPEQPE--KPLDLAHIVPPRPLTNMNDTMVSHMSSGVPTPTKRLQYSQDIPSHLADEHALIA-----------SYVARLQHCARVLDS-----PS------RLDEEHRLIARYAARLAA----EAGNVTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEKAQQ---NPTLLAELRLLRQRKDELEQRMSALQESRRELMVQLEELMKLLKEEE 521
The following BLAST results are available for this feature:
BLAST of TCONS_00046360 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DTNB3.191e-3038.34Dystrobrevin beta OS=Homo sapiens GN=DTNB PE=1 SV=... [more]
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