|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046347 ID=TCONS_00046347|Name=TCONS_00046347|organism=Clytia hemisphaerica|type=transcript|length=455bp
GGCggccaatttaaaaatctcaaaCTTTCAGAAACCAGCTGCAACTTTCA
GCAATCAACACTCTCCTATCGCCTTATGTGTGCTTTGATAACCAATCAAA
GTAGTTAAAGAGATTGGGAAAAAATGGAGATTGATGAGATaaagattgag
tttaatgatgTACATGAATCGCCCATGGAACATGAAGTTCCTGCTCAAGC
CCTCATGACATTGCACGATTCTGTACAAAACATGCCAAGTAAACAAAAGT
CAGCTCTACAGGAAGCAGTAGCTGATGCATCACCAATCAAACGGCCACGT
CTTGAGGGTTTACAGGACAATCAGCCATGGAACCAATATTCGCCCTTGAA
ACGCTACGAACCTAGATCTCTTTCCAAAGATTTCTCACAAGAACAATTGG
AGAGCATGAATAAAAACTACACCTCAATTAAAAACACTTTGAAGCAATCA
TCCGG Run BLAST on NCBI transcript from alignment at scaffold_109:70520..77012+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046347 ID=TCONS_00046347|Name=TCONS_00046347|organism=Clytia hemisphaerica|type=transcript|length=6493bp|location=Sequence derived from alignment at scaffold_109:70520..77012+ (Clytia hemisphaerica)
GGCggccaatttaaaaatctcaaaCTTTCAGAAACCAGCTGCAACTTTCA
GCAATCAACACTCTCCTATCGCCTTATGTGTGCTTTGATAACCAATCAAA
GTAGTGTAAGTTTAAAGTTGATGTTATTTTATGATCACCCATTTGCGACG
ATGttctgatgttttttttttaaggctAATGCAAACCATGCAAATAGCAA
ATAAATGGACTGATCCATGACCAGCACATGACCAGAGTGCCAGACGCCAG
AGGAGTCAGGACCACGCAGGGCCAGGAGGGTAACTGTATATTGCCAAAAT
TTAAGGTAAACTTTGAATTTTTAGCAGTCCAGCTTTCTGTGCGATTTTGA
GCTTCGCTGCGAAACGCAACCAGAAAGAGAAAACAAGACCCCTCCTGTTT
TAACCAGTCAAGTACCAGACAGtactaattgataaatttgatTATCCAAA
CAAAGTAATCGAtaaggccaggcccaattgattgtttggttcgtgtccta
gaAGCTTTGATAAATGGGTTGGTccgtcagtcggtcggtcggtagctaAA
GGCTAAAGATggaacattttttcattttcccaccaaaaacctccattttt
gaaattcctcaaGCAATCGCGCAATTCTAGAATCCAACCACGACTGTAAA
GAAATAGCCTAAAGCCCGGATCCTCAAAGGCCAAGgcacgcgctgcgatc
gcaaGATAACTTCTAGTTGAAGATTAAGACGTTTGCGGCGTGTGCTTTAA
AGGAATATAGCTGTAGACTCTCTCTGCTTTTTAGGTGTTGATATTTGTTT
TTACNGAAAAGGTCTATACAGCTGTAGACTCTCTCTGCTTTTTAGGTGct
tgatatttgtttttaagtaccCCCGTGGGTTACACCGGGACATTTTCTGT
GCACAAAGTGGATGTTGTTTATAGAAGAATCAAAGCAGTCAGttataaaa
aaagaacagcAGAGATAGTAGTTATCATGTGAAAAGGaggtagaattttt
ttgatttttcctactcaaagtgaaacactttttctcaaaaatttacaGTT
GGTTggaggacacgaaccaaactgTCAAttgcagtgctgcaaataacggc
cggtgaccggtaattaccggtcattttTAAGCTAATATGTGTGTTTTTTC
CCGAGAAATTTTGATGGTTTCATTGTTAGTGATTTCTGATTGAGTAATCA
CCGTCCAAATTGAAattccttatttgcagcactgaatTGGGCCTGCCCTA
ATGATCAAAGTAATCGAACGACTATTTATcgtttatcaaattttgagtac
caaaatttcaaaaacattgtgAGTCTTCGATCACTTTCTTAATAAATTAT
CGGAGAGTAtatatagacctaactcttcatacaaaactTACcagaaacgc
atatttggactttgtaccctatgctgcacacaagcacttaagccaaagtc
ctgcaaaggcgggacaaaaatcagaagtttgcaaaaaacgcCACGTacaa
gatctttcaaattcagtatgcgaatagagcagtaaaaaatacaacttttc
ctatttttcttattttttgcaaaagttctaggaacgAAAATAAAGGGATA
TATCCGCTGATGATCCGCGGTGCCAACTATTGTAACAATAACCAtttgag
tactttgattgttattgattacttccgataacttcgataaccaattgatt
acttcgataaccAATACCGATACCTTGGAaaaaggcgctgtggtatagtg
gtcattgaccttggttactgcacaggcgactgaggttcgattcccactcg
cagcggttcacttggcaagtgaatgaacccatgccatgtgaggggaattg
ggtagtcagtccaaggtgctggcggggcgctcattgaaagcgtctatagt
tgcgaaaataggcctcaaagcctcctgcaactcaaccaaatagaaaaata
gaaataggaaaaaccaaaaacagTGACCTAAAACCAAACCACAAAAAGAA
GCCATAAGAATCACCTTCAGTACTTCCCCGTTTTGAATGTGCTTGCTCTG
GGTTTCCTTAAATAAACCAAATCACGCATTTTGATTGGTCGGAGAGAGCA
AAAGTGGTTTTCCCACGTAAATCGCGTGTTTTTATTGTACAAAATAAACT
ATTTTATTGGACGAGATGAACTCAGTTTCAGATTCCATCGCTTTGCTACA
GGAAGCATATCCGACACaatcgaaggtattcaatatgatcgaaagTGATT
GAACATACAATCaaacaaatcgaaaatggtCAAAGAAAATGCCATGATTA
AGAGTTGAGGGATTATTCAATCACCGATAGAATCAATAAGTGGTCACTGA
TCaccttcgattattatcgatcattattgattacttcgatcacaatcgaa
tgttcgattagtaccgtctggttttaagtttgtttacatatgactcgatt
ttgctagtCTCCATCTGtccatttccaacaaaaagcagttatgaaaacaa
aagtaaacgAGTCATAGTGTGCCTACTAAttgcgagggtgtcaaatacca
cgtgtttcTGCGTGTTTAATAGTAAAATTAACgttagaaatttttgttta
tttactttttttaacttttctgctgattcagcattctgCTGATTCAGTTG
ATAAAGTATAGATAAACGAATAAATAAAATAGCaaagtagcgagttgata
aagcaacagataaacaaatgaagaaaGTAGCAAAGAAGCGAGTAGAAAAA
GCAATAGAttaacgaatgaagaaagtcaGGAGGTATTTTTTAACTTCGCA
TTTTTGagttagaaaatcttttttggtcgctaaatctaaaattcacttcG
CAACTaaagcacttaagctaaagtcccgcaaaagtgggacaaaaatcagt
ttcttgaagtttgcaaaaaaacgccacatagaagacacaacttttgttga
cgtcaaaccaaaggttttatttttccgtgaactttgaacccttctaacat
tttttctatgtatgctaaagcatTCCGGattttactaaaagaaagcctgt
gatcttagctttcaagcggtatataacactgtggacacgggctagacggc
aaatttgTCTGCTACGGGAATGAAAAAAGTTGCAACTATTGatgaacaaa
tgtttctggaaatggaggaactcatagttgaaggctgaaactctgtatgt
ttatcagaaaaaggttgaggaattcaaaaatcgctagttctagttctttc
atcttcatgtagttttttttagcatgggaatgtcccaaaaatcagggttt
tctcctttttctttacttataactttttgttcctccatttccagaggcct
accaccttttttggctcatttcaaccttttccaagctattttcttcaaaa
acaaaaataaaacaatgcaatgtcttcttttctcaaaaaaaggatatatc
ttttgttatcttgataaatatactaaatattttacaaatatttttatata
ataatattctaacaccatcaaagaattccaTAGCGCCAGCCTGGATTTAG
GTCCCatgcaaaaattaggtcccccctgagttttaagtccccccaaagaa
TTATGAATCTTTTGTTAGCCCCAAGgacttttgactttttagacactttc
aaaaaattgatccagtaaaaaagggttttccaatTTAAATTGTGTTCAGT
TCTAAGTTTTTAAGATCAAATATTTTGCACACTATTTATAAATATATTGC
GCCGCAgactaaaaattttcagattcatgagcttcaatttgagtaattga
accaactattaagctgaattattttagcccccacgtaagtgatgagattt
tagttCCCCCCAAGTAAATAGATCCCCCTAAAAAAGTGGCGTAGTTCCAG
GCAtctccttttttgggaaagaTTTGGGGTGTAACCCCTCCCCCAACCAG
Cagggggggctgacgctatgaattctccctccaaatttcaggtctctagc
tacactagaaaaagagatatgcaaaattaaagaagTATGACTGGAAAAAA
GTGACTATCTATCTCAGGTAGGTCTTGGGATCCCATAGGGTTCCCTTTAG
GGCAGACCTGCCAATTTGAGATGTTCATTTTGtgtgagataaaaatttcg
cAGCGAAATCTGAAATTTTAGCCTGGTTTATTTGATTGTAGGGAATCGAA
AGTCAGgaaattttttcccaaaatgggtatattcaaaaatttagaatatt
ggggaaacttttttccaaaaatgagaaaattggGAGAACATTTTTTCcct
aaaattagaaaattcttttaattctgaaaatcagaaaatcggggtaactt
tttcaaaagttggaaaaatcaaggaaaatttttctcaaaaatgcttgAGA
AatccaacttttcaaaaattgcacAAGGCAATGTGGAAATGTGTGAGTCT
CAAAACCAATGCATGAGAGTTGCTGGCACCTCTGTTAGGGGCACTTGTAG
AGCTGGGAGCTATTTTAATTAAGGTCTATAAATTCCATGCTATCAGTTTA
TATTTGTGAATGACCAAAATCTATCCTGTCTCAGTGGCGCAAGCAGTTGG
GCGCTGGGTTTAGGTAGGAGACCTATTTCACTGATACaggaaaatctcaa
aaaaatacATAGAGGACAgttaaaaacaaagttttcacGAAAATTCTTTA
CAAAAGTCctcattttcttctttgtcaaattttttcattgcaatttttaa
attttcatattcaagGATAGTTGCTCTACCAGAAAATGTATATCATACCA
aagttttgtgggctacatcaggcagaaatttGTATTGCGTATGtgtcaaa
tatgaaaaattggtcagagccctttaaaagaaccatttgaTAATCAATCG
ATTCAATCTATAGATAATCAAGCCTTCCTTTAAAATCCTGATAATAGATT
ACCAATTCTTATTGattattggaattttttattgatCTATTGGTcatcaa
ttgaaaaaaaattgttgatttgtCAAGTAATAGGGTCTGCTAAAATGTGA
CCGCTGTGATATCTCTTAAAGAaacattgaaaagctttttctaGAGGGTG
CTAGCAATATGCAGAATTAAGTGTTTTCATTTCAAGAAATGACTCGCAAG
TCAGAAGCTTGTATCTCAGGAAAGATTAAACATTGTTAAAACAGGctaaa
aaattaaagatttttgaaatgtttcctCTTGGTTCGGTTCAAGTTGATAA
TTTgttataattttatttcttacaAAGTGTTTAGTAAAGAGATTGGGAAA
AAATGGAGATTGATGAGATaaagattgagtttaatgatgTACATGAATCG
CCCATGGAACATGAAGTTCCTGCTCAAGCCCTCATGACATTGCACGATTC
TGTACAAAACATGCCAAGTAAACAAAAGTCAGCTCTACAGGTAAGATCTT
CCCTGCTTTTACAATTGTCTTGAATTATCTTGTTTACACAAACAAAAGTA
AAGGATAAGTCCTTTTAATTTATATTTCTCAATTTTATATTGTTTGCCAA
TAATGAAAAATACTATTGTCGTTTCAGAGGATTTTAAGCTAGGCTTGGTG
TTAAAATCTCAGACAGTACTAAAAgggttttcaagtttttttttgcatga
taCCCCAATAGCACCACCCCATCATTTTAGAGAAGTAGTTTTAGTATGTT
GTGTATTTTTGAACTTACAAAATGGTCCTATTAATTAAACAGTGTTTGTT
TGTTCGTTCATTCGTTAATTACCAGCACTTCTCGGGACTGACTGataaat
tttttatgatttcttGAGGTTTTCTTATTAGTTTTTCCTGACTTTCTGTT
TATTTAATATAATGTTTCTGTTGATCAGCCAGGTGGGTCTATAAAATTAA
AGTATCacttattttttattaatttagcAAACATTATAGGCATAtgatta
aaatgtaaaaataactttttttaaaggagaaaattattttcgaaaaattt
agggaaaattctaaaaaagatttaaagaagATAAAGTCACCTTTACTTTA
TTTAGTCCTCCATGTTTATAAaaggattttaatttttttggtatacCATA
ACAATTTCACTTTAACGTCacgatgtctgagattttaatatgctaaaatt
tccagggttaAAAGATTGATTGACCATGTCTGGCATTTCCAAGTTCTGAA
GGCTGGATTTGTATTGCAACATAAGTCAGGTTTTGGTAACTTATTTATTG
TAACTGTCTTATCCAAGTCCACTGTTTTATAATTACTTGAATTTCTTAGG
AAGCAGTAGCTGATGCATCACCAATCAAACGGCCACGTCTTGAGGGTTTA
CAGGACAATCAGCCATGGAACCAATATTCGCCCTTGAAACGCTACGAACC
TAGATCTCTTTCCAAAGATTTCTCACAAGAACAATTGGAGAGCATGAATA
AAAACTACACCTCAATTAAAAACACTTTGAAGCAATCATCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046347-exon-scaffold_109-1491911889:70520..70624 | TCONS_00046347-exon-scaffold_109-1491911889:70520..70624 | Clytia hemisphaerica | exon |
| TCONS_00046347-exon-scaffold_109-1510915933:70520..70624 | TCONS_00046347-exon-scaffold_109-1510915933:70520..70624 | Clytia hemisphaerica | exon |
| TCONS_00046347-exon-scaffold_109-1575043694:70520..70624 | TCONS_00046347-exon-scaffold_109-1575043694:70520..70624 | Clytia hemisphaerica | exon |
| TCONS_00046347-exon-scaffold_109-1491911889:75804..75959 | TCONS_00046347-exon-scaffold_109-1491911889:75804..75959 | Clytia hemisphaerica | exon |
| TCONS_00046347-exon-scaffold_109-1510915933:75804..75959 | TCONS_00046347-exon-scaffold_109-1510915933:75804..75959 | Clytia hemisphaerica | exon |
| TCONS_00046347-exon-scaffold_109-1575043694:75804..75959 | TCONS_00046347-exon-scaffold_109-1575043694:75804..75959 | Clytia hemisphaerica | exon |
| TCONS_00046347-exon-scaffold_109-1491911889:76819..77012 | TCONS_00046347-exon-scaffold_109-1491911889:76819..77012 | Clytia hemisphaerica | exon |
| TCONS_00046347-exon-scaffold_109-1510915933:76819..77012 | TCONS_00046347-exon-scaffold_109-1510915933:76819..77012 | Clytia hemisphaerica | exon |
| TCONS_00046347-exon-scaffold_109-1575043694:76819..77012 | TCONS_00046347-exon-scaffold_109-1575043694:76819..77012 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_109 | supercontig | scaffold_109:70520..77012 + |
Blast
The following BLAST results are available for this feature:
|
