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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046338 ID=TCONS_00046338|Name=TCONS_00046338|organism=Clytia hemisphaerica|type=transcript|length=2568bp
aacgattattttaaaacttttagatttcgagaaaattagtttcaaagaga
gaaacttttttgtggcgcacccggtagaaagACCGAATATTTGTACACTG
CAattctttgaaatgaatttatgaGGGATAACGGGACCCCTGCAAATAAG
ATTTAATATTTCGTTCTCGGTCTTTTTAGAATGCATAATATAGATAAAAT
GGAAGTTGATTCAAACAATAGTAAAAAAACGACTAGTGCTACTCGAAAAC
GACATGCCATTCGATTATTTATCGGGTATGAACAGGATGCACAAGAACTC
GTTAAGAAATTCATCGATATGAAACGACAACACGATTTCCAGAGTACTGT
CGATTTGTTTTCATGGTTATTGGAACTTGGACACAGCGCTGAAAAACCTT
TTCGACCAGCTAAAATAAGGAGATTGGCAAAAGAATGTGATAACAAGAAC
ACGAGGCCTGGTCCCCATAAACACGAACAACAATTAGATCCTGAAAACGA
GGCTTCGAAATCGGGGAACGTGCGTCGACGTAAACAACAGAATCCGTTGA
AAGCGAATCGAACCAGTTCtgaagaacatgaagaatatTCACCGACACAA
ATGGATGAATATGAACTGAAAAGTGATTCTCCTGTTTATCCACGAAGGCG
TGAATTCGATTCAAAGACTATTGATTATGGGCATATTGTTTCCAGCATTG
AAAGAAGGAGAAGTGAACATAACCAAGGTTTTAGTGATGGGAAAAGATCT
GAGATGAACCCAGACTTGCATGGAACTACTAAGAAATACGATACCCATCC
TGATGGAAAAAGATATGTCTTTAACCAAGATATTACTGGTGAAAGGTACC
AATATCATTCAACTGTTGCTGTAGGTAAGAGATTCGAATATCCTGGCTGT
ATTGTGGTCAAAGAGGaatcatttgatgaagaactATCGAGTTGTGATGG
ATCTGAAACAAGTTATCATGGACCTTGAGGAGAATGACTTATGGAGATTT
ATTTGAGGTTGGTGGTAGATTTATCCCGGTTAAAGTATTCGTTGGTTACT
TCCTTGAATGAGAAGCTGTTGGTGCATAGATATTTACTTGTGATGGTGCA
TAATTCTTACTGAGTTGAAAAATGGTCttggagttttttgaatgtttgtC
AGTTAGTTCTTAGTGGGTGTTAAATCTTTTTAATGACATATCTGAGGAAA
GAAAGAGATCGTCTGAATATGATGCATCAGACATTAATGTGAATGCAAAC
CAAAGGAATATTGATGAAGATATTTACGAATAATATATgcttttaattta
aatttatatGTATACTTTTCGAATTTCAATGTACATTATGGTTGATGCTA
ATCAGTACCAGAGATGATGCATccagaatttcttttgatacttgATATCT
GTTAGTTTGTAATAATTATTCCCTGTGGGAATGTATGTCAGAAAAGAATT
TATAAAGGACTGTATAAAATTGGCTTGCTTTAAACTTAAGTCAACTTTTT
CCAACGTTTATTTTAGGCAGCTAGCTCTCGCGTGGTTGGCGGTCTAAACA
CCGATTTTCCTGTTTAGGGTTGTCTGTTGTTATGAGTTACGGATCTAAAT
TAAGTCAATCTGTCTTTAacgattttctcaaatttttctttagCATTATT
GCCAAAACTAAAACCTTATTCATTAGCCACCTAATGATTTGACAAATCCA
TGATTTACCGACTGGTCTTTACGAATCTTTGAATTAAAGATTTATTCAGC
TCTACTTTAAAACCTGTTAAAACTAGTATTTTCCTGTTTTGCATGAAATC
CAATTTTAAAGCATATTTTTTCATCATAATTAGATTTACTTTtgctacac
gtttttcttttcctgagaacatccaaaatttttgaagtctccaggtgttt
cgagttttaagcctaaaaatgttcttaagctctggtttagacggcccact
tttcgccctgacTTTTCTAATTGTGAACGATGGCAGAAAGCGGGCAAAAG
GTTGGCAAACTATTTTTTACTTTAGACAGCCGTCTGTCGGCCAACTTtca
ttcacaattagaataggtagggcgaaaagtgggccatCTAATACAGAACA
AACATATTTTTGCCATTCTTTGAGTATTTGTGTccattttccaagaaatt
aagtgttttagagtccacgaagccttaaaatgttcttcacTTGGtctaaa
tattttggtcatcgaagccatatgttctcatatagtttgttcttataaaa
aacgtgtaatagatattgacatttttgttcttatttaaggTAACCAAAAT
GCACTGTAGGTAAGGGTCGACAAAAGAAAGATAGACTAAGAGACTAAGCT
TTGTTCTTAggttattcttatttttcgacGATTTTTAGTTTCATTGGTCT
TGTGaaatagtttttattgaaaaaaaagacaaCCTTGGATTCAAACAGCT
ACACCtttgttataagaacaaactatgataagaacataaggctttgatag
ccaaaatgttaagaacaagttaagaacatttaagactTTGCGGACATCGC
CACATTTCTCAGGAAATT Run BLAST on NCBI protein sequence of TCONS_00046338-protein >TCONS_00046338-protein ID=TCONS_00046338-protein|Name=TCONS_00046338-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MHNIDKMEVDSNNSKKTTSATRKRHAIRLFIGYEQDAQELVKKFIDMKRQ
HDFQSTVDLFSWLLELGHSAEKPFRPAKIRRLAKECDNKNTRPGPHKHEQ
QLDPENEASKSGNVRRRKQQNPLKANRTSSEEHEEYSPTQMDEYELKSDS
PVYPRRREFDSKTIDYGHIVSSIERRRSEHNQGFSDGKRSEMNPDLHGTT
KKYDTHPDGKRYVFNQDITGERYQYHSTVAVGKRFEYPGCIVVKEESFDE
ELSSCDGSETSYHGP Run BLAST on NCBI transcript from alignment at scaffold_108:567946..570513 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046338 ID=TCONS_00046338|Name=TCONS_00046338|organism=Clytia hemisphaerica|type=transcript|length=2568bp|location=Sequence derived from alignment at scaffold_108:567946..570513 (Clytia hemisphaerica)
AATTTCCTGAGAAATGTGGCGATGTCCGCAAagtcttaaatgttcttaac
ttgttcttaacattttggctatcaaagccttatgttcttatcatagtttg
ttcttataacaaaGGTGTAGCTGTTTGAATCCAAGGttgtcttttttttc
aataaaaactatttCACAAGACCAATGAAACTAAAAATCgtcgaaaaata
agaataaccTAAGAACAAAGCTTAGTCTCTTAGTCTATCTTTCTTTTGTC
GACCCTTACCTACAGTGCATTTTGGTTAccttaaataagaacaaaaatgt
caatatctattacacgttttttataagaacaaactatatgagaacatatg
gcttcgatgaccaaaatatttagaCCAAgtgaagaacattttaaggcttc
gtggactctaaaacacttaatttcttggaaaatggACACAAATACTCAAA
GAATGGCAAAAATATGTTTGTTCTGTATTAGatggcccacttttcgccct
acctattctaattgtgaatgaAAGTTGGCCGACAGACGGCTGTCTAAAGT
AAAAAATAGTTTGCCAACCTTTTGCCCGCTTTCTGCCATCGTTCACAATT
AGAAAAgtcagggcgaaaagtgggccgtctaaaccagagcttaagaacat
ttttaggcttaaaactcgaaacacctggagacttcaaaaattttggatgt
tctcaggaaaagaaaaacgtgtagcaAAAGTAAATCTAATTATGATGAAA
AAATATGCTTTAAAATTGGATTTCATGCAAAACAGGAAAATACTAGTTTT
AACAGGTTTTAAAGTAGAGCTGAATAAATCTTTAATTCAAAGATTCGTAA
AGACCAGTCGGTAAATCATGGATTTGTCAAATCATTAGGTGGCTAATGAA
TAAGGTTTTAGTTTTGGCAATAATGctaaagaaaaatttgagaaaatcgt
TAAAGACAGATTGACTTAATTTAGATCCGTAACTCATAACAACAGACAAC
CCTAAACAGGAAAATCGGTGTTTAGACCGCCAACCACGCGAGAGCTAGCT
GCCTAAAATAAACGTTGGAAAAAGTTGACTTAAGTTTAAAGCAAGCCAAT
TTTATACAGTCCTTTATAAATTCTTTTCTGACATACATTCCCACAGGGAA
TAATTATTACAAACTAACAGATATcaagtatcaaaagaaattctggATGC
ATCATCTCTGGTACTGATTAGCATCAACCATAATGTACATTGAAATTCGA
AAAGTATACatataaatttaaattaaaagcATATATTATTCGTAAATATC
TTCATCAATATTCCTTTGGTTTGCATTCACATTAATGTCTGATGCATCAT
ATTCAGACGATCTCTTTCTTTCCTCAGATATGTCATTAAAAAGATTTAAC
ACCCACTAAGAACTAACTGacaaacattcaaaaaactccaaGACCATTTT
TCAACTCAGTAAGAATTATGCACCATCACAAGTAAATATCTATGCACCAA
CAGCTTCTCATTCAAGGAAGTAACCAACGAATACTTTAACCGGGATAAAT
CTACCACCAACCTCAAATAAATCTCCATAAGTCATTCTCCTCAAGGTCCA
TGATAACTTGTTTCAGATCCATCACAACTCGATagttcttcatcaaatga
ttCCTCTTTGACCACAATACAGCCAGGATATTCGAATCTCTTACCTACAG
CAACAGTTGAATGATATTGGTACCTTTCACCAGTAATATCTTGGTTAAAG
ACATATCTTTTTCCATCAGGATGGGTATCGTATTTCTTAGTAGTTCCATG
CAAGTCTGGGTTCATCTCAGATCTTTTCCCATCACTAAAACCTTGGTTAT
GTTCACTTCTCCTTCTTTCAATGCTGGAAACAATATGCCCATAATCAATA
GTCTTTGAATCGAATTCACGCCTTCGTGGATAAACAGGAGAATCACTTTT
CAGTTCATATTCATCCATTTGTGTCGGTGAatattcttcatgttcttcaG
AACTGGTTCGATTCGCTTTCAACGGATTCTGTTGTTTACGTCGACGCACG
TTCCCCGATTTCGAAGCCTCGTTTTCAGGATCTAATTGTTGTTCGTGTTT
ATGGGGACCAGGCCTCGTGTTCTTGTTATCACATTCTTTTGCCAATCTCC
TTATTTTAGCTGGTCGAAAAGGTTTTTCAGCGCTGTGTCCAAGTTCCAAT
AACCATGAAAACAAATCGACAGTACTCTGGAAATCGTGTTGTCGTTTCAT
ATCGATGAATTTCTTAACGAGTTCTTGTGCATCCTGTTCATACCCGATAA
ATAATCGAATGGCATGTCGTTTTCGAGTAGCACTAGTCGTTTTTTTACTA
TTGTTTGAATCAACTTCCATTTTATCTATATTATGCATTCTAAAAAGACC
GAGAACGAAATATTAAATCTTATTTGCAGGGGTCCCGTTATCCCtcataa
attcatttcaaagaatTGCAGTGTACAAATATTCGGTctttctaccgggt
gcgccacaaaaaagtttctctctttgaaactaattttctcgaaatctaaa
agttttaaaataatcgtt Coding sequence (CDS) from alignment at scaffold_108:567946..570513 >TCONS_00046338 ID=TCONS_00046338|Name=TCONS_00046338|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_108:567946..570513 (Clytia hemisphaerica)
TCAAGGTCCATGATAACTTGTTTCAGATCCATCACAACTCGATagttctt
catcaaatgattCCTCTTTGACCACAATACAGCCAGGATATTCGAATCTC
TTACCTACAGCAACAGTTGAATGATATTGGTACCTTTCACCAGTAATATC
TTGGTTAAAGACATATCTTTTTCCATCAGGATGGGTATCGTATTTCTTAG
TAGTTCCATGCAAGTCTGGGTTCATCTCAGATCTTTTCCCATCACTAAAA
CCTTGGTTATGTTCACTTCTCCTTCTTTCAATGCTGGAAACAATATGCCC
ATAATCAATAGTCTTTGAATCGAATTCACGCCTTCGTGGATAAACAGGAG
AATCACTTTTCAGTTCATATTCATCCATTTGTGTCGGTGAatattcttca
tgttcttcaGAACTGGTTCGATTCGCTTTCAACGGATTCTGTTGTTTACG
TCGACGCACGTTCCCCGATTTCGAAGCCTCGTTTTCAGGATCTAATTGTT
GTTCGTGTTTATGGGGACCAGGCCTCGTGTTCTTGTTATCACATTCTTTT
GCCAATCTCCTTATTTTAGCTGGTCGAAAAGGTTTTTCAGCGCTGTGTCC
AAGTTCCAATAACCATGAAAACAAATCGACAGTACTCTGGAAATCGTGTT
GTCGTTTCATATCGATGAATTTCTTAACGAGTTCTTGTGCATCCTGTTCA
TACCCGATAAATAATCGAATGGCATGTCGTTTTCGAGTAGCACTAGTCGT
TTTTTTACTATTGTTTGAATCAACTTCCATTTTATCTATATTATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046338-exon-scaffold_108-1491911889:567946..570513 | TCONS_00046338-exon-scaffold_108-1491911889:567946..570513 | Clytia hemisphaerica | exon |
| TCONS_00046338-exon-scaffold_108-1510915933:567946..570513 | TCONS_00046338-exon-scaffold_108-1510915933:567946..570513 | Clytia hemisphaerica | exon |
| TCONS_00046338-exon-scaffold_108-1575043694:567946..570513 | TCONS_00046338-exon-scaffold_108-1575043694:567946..570513 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_108 | supercontig | scaffold_108:567946..570513 . |
Blast
The following BLAST results are available for this feature:
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