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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046311 ID=TCONS_00046311|Name=TCONS_00046311|organism=Clytia hemisphaerica|type=transcript|length=2006bpRun BLAST on NCBI protein sequence of TCONS_00046311-protein >TCONS_00046311-protein ID=TCONS_00046311-protein|Name=TCONS_00046311-protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp MFKKSIHSSSKPKTTRLTTTTAAAATASTTNSPAIKITFVSAVSSGNLQQRun BLAST on NCBI transcript from alignment at scaffold_108:504521..507005- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046311 ID=TCONS_00046311|Name=TCONS_00046311|organism=Clytia hemisphaerica|type=transcript|length=2485bp|location=Sequence derived from alignment at scaffold_108:504521..507005- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_108:504521..507005- >TCONS_00046311 ID=TCONS_00046311|Name=TCONS_00046311|organism=Clytia hemisphaerica|type=CDS|length=3294bp|location=Sequence derived from alignment at scaffold_108:504521..507005- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046311 vs. Swiss-Prot (Human)
Match: ANK3 (Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3) HSP 1 Score: 142.51 bits (358), Expect = 8.772e-35 Identity = 110/333 (33.03%), Postives = 169/333 (50.75%), Query Frame = 1
Query: 223 AVSSGNLQQVKSAYNKSININKQHQVGQTLLYHAAFKGYTDIVQFLLDNGADMMICDDNGNFPIHTACNKGQVRCVELLIKKGANVDLLNRKNLTPMHFAV-CGDQYETAKLLLNYGANVNSRNKNNVGYLYFASSHGNLQMVELLLQCGAIIDIPGRTASN-SALHVASTKGHYKVVSCLINHGAS---LSLKGEKFSALFSAIHHKRLEAVDVLLDAGADPNFVISGVEQRPLHHLAFKYINDLDYMSRLVDHGADVNVVEENGLTPLHFASSADNLRAAEYLLSHGADANIKSKKGSTALTVA----KTEEMKMLLRKHTDDQSSASSAV 1194
A GN VK ++ I+ + + G T L+ A G+ +V+ LLD A ++ NG P+H A + CV+LL++ VD + LT +H A CG Y+ AK+LL+ AN N++ N L+ A ++++ELLL+ GA I T S + +HVA+ GH +VS L++HGAS +++GE +AL A + E V L+ GA + +Q PLH A + D + +L+ GA N +G TPLH ++ + A +LL HGA +I +KKG T L VA K E +LL+K ++ S +
Sbjct: 275 ASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAAHCG-HYKVAKVLLDKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGASIQ--AVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGE--TALHMAARSGQAEVVRYLVQDGAQVE-AKAKDDQTPLHISA--RLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYGKLEVANLLLQKSASPDAAGKSGL 599 HSP 2 Score: 125.561 bits (314), Expect = 2.364e-29 Identity = 89/288 (30.90%), Postives = 143/288 (49.65%), Query Frame = 1
Query: 277 NINKQHQVGQTLLYHAAFKGYTDIVQFLLDNGADMMICDDNGNFPIHTACNKGQVRCVELLIKKGANVDLLNRKNLTPMHFAVCGDQYETAKLLLNYGANVNSRNKNNVGYLYFASSHGNLQMVELLLQCGAIIDIPGRTASN---SALHVASTKGHYKVVSCLINHGASLSLKG-EKFSALFSAIHHKRLEAVDVLLDAGADPNFVI-SGVEQRPLHHLAFKYINDLDYMSRLVDHGADVNVVEENGLTPLHFASSADNLRAAEYLLSHGADANIKSKKGSTALTVA 1125
N + + + G T L+ AA G ++ LL+ A + N P+H A +G V+LL+ +GA +D R LTP+H + ++LL+ A + S+ KN + L+ A+ +L V+LLLQ +D +N +ALHVA+ GHYKV L++ A+ + K F+ L A R++ +++LL GA V SG+ P+H AF + ++ +S+L+ HGA N G T LH A+ + YL+ GA K+K T L ++
Sbjct: 227 NADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVD----DVTNDYLTALHVAAHCGHYKVAKVLLDKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGASIQAVTESGL--TPIHVAAF--MGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHIS 506 HSP 3 Score: 124.79 bits (312), Expect = 3.358e-29 Identity = 87/277 (31.41%), Postives = 144/277 (51.99%), Query Frame = 1
Query: 301 GQTLLYHAAFKGYTDIVQFLLDNGADMMICDDNGNFPIHTACNKGQVRCVELLIKKGANVDLLNRKNLTPMHFAVCGDQYETAKLLLNYGANVNSRNKNNVGYLYFASSHGNLQMVELLLQCGAIIDIPGRTASNSALHVASTKGHYKVVSCLINHGASLSLKGEK-FSALFSAIHHKRLEAVDVLLDAGADPNFVISGVEQRPLHHLAFKYINDLDYMSRLVDHGADVNVVEENGLTPLHFASSADNLRAAEYLLSHGADANIKSKKGSTALTVAK 1128
G T L+ +A +G+ D+ FLLD+GA + I G P+H A G++ LL++K A+ D + LTP+H A D + A LLL+ GA+ ++ KN L+ A+ + + LL+ GA + R S +H+A+ +GH +VS L+ A+++L + + L A R+ +VL++ GA + + + PL H+ Y N + ++ L+ H A VN +NG TPLH A+ + LL + A N + G+TAL +A+
Sbjct: 532 GYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYGKLEVANLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKKNQMDIATTLLEYGADANAVTRQGIAS-VHLAAQEGHVDMVSLLLGRNANVNLSNKSGLTPLHLAAQEDRVNVAEVLVNQGAHVD-AQTKMGYTPL-HVGCHYGN-IKIVNFLLQHSAKVNAKTKNGYTPLHQAAQQGHTHIINVLLQNNASPNELTVNGNTALGIAR 804 HSP 4 Score: 116.701 bits (291), Expect = 1.242e-26 Identity = 90/269 (33.46%), Postives = 135/269 (50.19%), Query Frame = 1
Query: 319 HAAFKGYTDIVQFLLDNGADMMICDDNGNFPIHTACNKGQVRCVELLIKKGANVDLLNRKNLTPMHFAVCGDQYETAKLLLNYGANVNSRNKNNVGYLYFASSHGNLQMVELLLQCGAIIDIPGRTASNSALHVASTKGHYKVVSCLINHGASLSLKGE-KFSALFSAIHHKRLEAVDVLL--DAGADPNFVISGVEQRPLHHLAFKYINDLDYMSRLVDHGADVNVVEENGLTPLHFASSADNLRAAEYLLSHGADANIKSKKGSTAL 1116
AA G+ + + NG D+ IC+ NG +H A +G V V L+++ ANVD +K T +H A Q E K+L+ GANVN++++N LY A+ +L++V+ LL GA + + L VA +GH +VVS L+ + KG+ + AL A +A +LL D AD V S PL H+A Y N ++ + L++ A V+ N +TPLH AS N + LL GA + K++ G T L
Sbjct: 47 RAARAGHLEKALDYIKNGVDINICNQNGLNALHLASKEGHVEVVSELLQREANVDAATKKGNTALHIASLAGQAEVVKVLVTNGANVNAQSQNGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDGF-TPLAVALQQGHDQVVSLLLENDT----KGKVRLPALHIAARKDDTKAAALLLQNDNNAD---VESKSGFTPL-HIAAHYGN-INVATLLLNRAAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPL 305 HSP 5 Score: 112.849 bits (281), Expect = 1.853e-25 Identity = 87/302 (28.81%), Postives = 144/302 (47.68%), Query Frame = 1
Query: 223 AVSSGNLQQVKSAYNKSININKQHQVGQTLLYHAAFKGYTDIVQFLLDNGADMMICDDNGNFPIHTACNKGQVRCVELLIKKGANVDLLNRKNLTPMHFAVCGDQYETAKLLLNYGANVNSRNKNNVGYLYFASSHGNLQMVELLLQCGAIIDIPGRTASN--SALHVASTKGHYKVVSCLINHGASL-SLKGEKFSALFSAIHHKRLEAVDVLLDAGADPNFV-ISGVEQRPLHHLAFKYINDLDYMSRLVDHGADVNVVEENGLTPLHFASSADNLRAAEYLLSHGADANIKSKKGSTAL 1116
A SG + V+ + + + QT L+ +A G DIVQ LL GA +G P+H + +G L+ GA++ + +K TP+H A + E A LLL A+ ++ K+ + L+ A+ + N ++ LLL GA P A N + LH+A+ K + + L+ +GA ++ + +++ A ++ V +LL A+ N SG+ PLH A + + ++ LV+ GA V+ + G TPLH N++ +LL H A N K+K G T L
Sbjct: 473 AARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYGKLEVANLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGA---SPHAAAKNGYTPLHIAAKKNQMDIATTLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLGRNANVNLSNKSGL--TPLHLAAQE--DRVNVAEVLVNQGAHVDAQTKMGYTPLHVGCHYGNIKIVNFLLQHSAKVNAKTKNGYTPL 767 HSP 6 Score: 109.383 bits (272), Expect = 2.559e-24 Identity = 85/306 (27.78%), Postives = 152/306 (49.67%), Query Frame = 1
Query: 211 TFVSAVSSGNLQQVKSAYNKSININKQHQVGQTLLYHAAFKGYTDIVQFLLDNGADMMICDDNGNFPIHTACNKGQVRCVELLIKKGANVDLLNRKNLTPMHFAVCGDQYETAKLLLNYGANVNSRNKNNVGYLYFASSHGNLQMVELLLQCGAIIDIPGRTASNSALHVASTKGHYKVVSCLINHGASLSLKGEK-FSALFSAIHHKRLEAVDVLLDAGADPNFVISGVEQRPLHHLAFKYINDLDYMSRLVDHGADVNVVEENGLTPLHFASSADNLRAAEYLLSHGADANIKSKKGSTALTVA 1125
+++ A +G+L++ ++IN +Q G L+ A+ +G+ ++V LL A++ GN +H A GQ V++L+ GANV+ ++ TP++ A + E K LL+ GA+ + ++ L A G+ Q+V LLL+ D G+ ALH+A+ K K + L+ + + ++ + F+ L A H+ + +LL+ A +F + PL H+A K N + + L+D GA ++ +GLTPLH + + + + E LL A K+K G + L +A
Sbjct: 44 SYLRAARAGHLEKALDYIKNGVDINICNQNGLNALHLASKEGHVEVVSELLQREANVDAATKKGNTALHIASLAGQAEVVKVLVTNGANVNAQSQNGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLEN----DTKGKVRL-PALHIAARKDDTKAAALLLQNDNNADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARN-DITPL-HVASKRGN-ANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAAPILSKTKNGLSPLHMA 341 HSP 7 Score: 88.5817 bits (218), Expect = 7.704e-18 Identity = 62/220 (28.18%), Postives = 101/220 (45.91%), Query Frame = 1
Query: 223 AVSSGNLQQVKSAYNKSININKQHQVGQTLLYHAAFKGYTDIVQFLLDNGADMMICDDNGNFPIHTACNKGQVRCVELLIKKGANVDLLNRKNLTPMHFAVCGDQYETAKLLLNYGANVNSRNKNNVGYLYFASSHGNLQMVELLLQCGAIIDIPGRTASNSALHVASTKGHYKVVSCLINHGASLSLKGEK-FSALFSAIHHKRLEAVDVLLDAGADPN 879
A G L+ KS + + + G T L+ AA + LLD GA NG P+H A K Q+ L++ GA+ + + R+ + +H A + LLL ANVN NK+ + L+ A+ + + E+L+ GA +D + + LHV G+ K+V+ L+ H A ++ K + ++ L A ++VLL A PN
Sbjct: 572 AAKYGKLEVANLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKKNQMDIATTLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLGRNANVNLSNKSGLTPLHLAAQEDRVNVAEVLVNQGAHVDAQTKMG-YTPLHVGCHYGNIKIVNFLLQHSAKVNAKTKNGYTPLHQAAQQGHTHIINVLLQNNASPN 790 The following BLAST results are available for this feature:
BLAST of TCONS_00046311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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