TCONS_00046287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046287
Unique NameTCONS_00046287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3128

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046287 ID=TCONS_00046287|Name=TCONS_00046287|organism=Clytia hemisphaerica|type=transcript|length=3128bp
ATCTTGCATTTTATATAAAATATCTGTGGGAATAGTAATGAAACAAAAAC
TGCTCACTCTTGCCATCCATTGCAGATAAAAATCTGGACGGCCAACTCGT
TGAAATAAAAATCATTTATAAATGATGTATGATTGTATTATAACTTATTA
GAATGTTGTTTTTTCGTAACTTTCATAGGTTAGTTTAGCATACGCACACG
AAACAAAGGATGCACTCTGTATGGTGCTATCCCTCATGAATGGCGGTGAT
CTCAAATTTCACATCCATAATATTGGCAATCCTGGATTCGAAGAAAAACG
TGCAGTTTTTTACGCGGCCGAAATCACGAGTGGCATATTATATTTACATT
CATCACGCATTGTTTATAGAGATTTAAAGCCAGAAAATATTTTACTGGAT
GATGTAGGTCATACAAGGATATCAGATTTGGGCTTGGCAATATATGTTCC
AGAAAACGAAACTGTTAAAGGACGTGTTGGTACTGTCGGCTATATGGCTC
CCGAAGTAGTTCGAAATGAACGTTACAAGTTCTCACCGGATTGGTGGGGT
GTGGGATGTATCATTTACGAAATGATTCAGGGAAAGGCTCCATTTCGAGC
ACCTCGTGAAAAAGTCAAGCGAGAAGAAGTGGACCGACGTGTCAAGGAAG
ACAAAGAGCGATATTCTGATAAATTCAGTGATGGCGCAAAAGCTATTTGT
CAAACTCTACTGGCAAAAGATCACAACGATCGATTAGGATGTCGTGGCAC
AGACGACCATGAGCAAATCAAAGGCCACGAATTTTATAACTCAATCAACT
GGCAACATCTGGAAGCTGGAAGAGCTAAACCTCCTTTCCCCCCAGACCCA
CGTGCTGTTTACTGTCGAGACGTCTTGGACATTGAACAGTTTTCGACAGT
GAAAGGAGTTCAGCTTGATGAAACTGATGATCAATTCTATAAAAAATTCG
CATCTGGCTCTGTTGCTATTCCCTGGCAAAAAGAGATGATCGAGACAGAG
GTGTTCAAAGAGCTTAATGTGTTCGGACCAAACGGCGCGCCGACGCCGGA
TCTTATAGGCGACGCACCGCCAGAAGAGCAAGAACACGAACCGAAATGTT
GTGGATTTTTTCGTGGCTCACGTCAGCGGACGAGGACGGCACAGACTTAT
GTGGCTGATCAGGAGCCTTCTACAAGTAGCGGGTAAAGTTGACGGAAAAG
AACTGCTACAAATCTCAACGTATGGGGACGTGTGTCACACTTAGATAGAA
TGTCGTTCACTCACATTGGCCAATGGTGGATAGGAGGCTCTAGAAGAAAT
GAACTCGTCGCTTCAATCAGATCACCATTCATACAAGCACCAATTGTTTT
GGTTGGGCTACATCTTTTAGAGTACCTtcaagatattttttggaatcaaA
AAGATTAGCACGAAATGGTTGATCATTGAGTATTTTCCATAGAATATTCA
CCAATGACATCTTCGCACGGTgcgaaatataaacaaaaattgaacAAGCA
AAGTAGATAtatgttatttttttagaaattgctACAAGAGAAAGAGGACA
ATAGGCAAAACGAaatttattgttattattaataTTAAAGATATGATGGA
CACAAAGAAGATATGACTATGTGTTTATCATattgaaattttacaatttt
tttattttttgccatTGCTTTATTTTATTCTGTTTTAATTAATTATAAAA
GGTAGATTCCGCATTTTAGCTTTGAATTAATATTTTAATAATCAATATGT
CGATTATTTTTCCTCTGGAATATAGTAATTACTTCTTACCAGATTTTTGA
TATAGTAACAAAGCTACATGGTAATTTCATTGGGATTGTTCTGTTGTTAT
TTTAGTTCTGCAGttattgaagaaattttcataatGCATTTTTCAGCCAT
TCTGATTTATGACTATTTTAAACTGTGGTATGCTACACCATATTACAAGA
TCCACGAAATTATATTCCAATTTCTTGATACCatggtttgtttttgtttt
aattttatcGTGTATAAATATTGTTTATCGTTCACTCCTTTATATCTCTA
ACCAAATTATGCTTATCTTCTTGATATCTATGGGGGGGTTGCATTTCTCC
TATTGataaaatttcaagcactttaagaaaaataaaacgaatcaattttt
ttgtaatacaatttcacaaattttatcatttttttcaatgtacATGATGA
AATTCGGGAAAACTAACACTATtagaaagaagtttatttctatcttagca
tagcaaaatttatctttttattatcattttacTTACATAAAGTAGAAACt
ttaaaattggattttttgaatttattgacTTGACCTCCAAGTCGACAATT
CTTTTCTCCATAAATTTATCGGTTGCTTTATATTTGCCTAATTGACGGCT
GAGGTATTTAGATTGCAACAATTGAAAAACGCACGCAGGCCTTCTTAGTA
ACTTTCATAAACTCTCTCAATCTTCTTTTAAAAGcggtgtggggagtttt
gcgAANGGCTGAGGTATTTAGATTGCAATAATTGAAAAACGCATCAGGCC
TTCTTAGTAACTTTCATAAACTCTCTCAATCTTCTTTTAAAAGCGGCGTG
GGGAGTTTTGCGAAATCTTTCGATTTTCACATGGAAAATAGTTGAAAATT
ATATAATAATATCATTTATAGACTCTTCTAAGCTGACATTCTCTTACAAC
TAATAACTGCCAAAAGCCGGGCAAGCACTAGCGGACAATATTCGCACTAC
CTCTTAGTACCTACTTGCAGGTAAAGGGTTTCGCACTGCTCTGTCCATCT
CTAACCCATTTCACAATTAGGCAATTAATTAAGTATGCTACCATTGCACT
GTCTCGCTAACCAATATCTTTAGAATGATTTATTAgtcaagattttttgt
tttattttgatttagttAATACACAAACAGTTTGTATTATATATCTAACA
TCCTGGGAGTGTGAATTCTAGGTATGGGTGAAACGAAATTTACTGATAAA
AAGTGCATGAAAAGATTGTACAAATTTATTTTAACAGATTactcaaaaga
aaatttctattagaatatttaaaacgctttaaacttatttttttatccCA
AAATATATATACAAAATAAGTATGTTCC
Run BLAST on NCBI

transcript from alignment at scaffold_108:353729..361102-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046287 ID=TCONS_00046287|Name=TCONS_00046287|organism=Clytia hemisphaerica|type=transcript|length=7374bp|location=Sequence derived from alignment at scaffold_108:353729..361102- (Clytia hemisphaerica)
ATCTTGCATTTTATATAAAATATCTGTGGGAATAGTAATGAAACAAAAAC
TGCTCACTCTTGCCATCCATTGCAGATAAAAATCTGGACGGCCAACTCGT
TGAAATAAAAATCATTTATAAATGATGTATGATTGTATTATAACTTATTA
GAATGTTGTTTTTTCGTAACTTTCATAGGTTAGTTTAGCATACGCACACG
AAACAAAGGATGCACTCTGTATGGTGCTATCCCTCATGAATGGCGGTGAT
CTCAAATTTCACATCCATAATATTGGCAATCCTGGATTCGAAGAAAAACG
TGCAGTTTTTTACGCGGCCGAAATCACGAGTGGCATATTATATTTACATT
CATCACGCATTGTTTATAGGTAAGGGTGTTATCGTAACTTTGTCCCTCTC
GAATTAACGCCCTCCTAAAAACCAAAAAAGTGATACGATAAAAAGTAATA
TGGTTTTCTCTGTAATTCGAACAAATAAGTTATCCCGTTCGATTTCGAAT
TAGCGTGAGTCAACTGTATACTTGAAATCTTCATTACTATAGAGCGATTC
TGTGTGATGTCATTTTCACCCTCAATCAGCCATTTTACTAAGAGACGGTA
GAAAGAATATGTACAGGATGATCTAGTATCATCTTGCTTAGCTCCAAGCC
TTTTAGTGTCCCCATTTGGACCTGCGCATAGTTTTGTGTTTGTTTTTATT
TCGTGGGTGAAAGTTATGTCAGTTAGGAACAGGCAGCTTGCTTGAGATTT
GGTTGAAGATAGTGCCTAACTAGTCTATACTGTATAACACATATTATGAA
CAACTCCAGTCCATCCTTAGGAAACTCATTATAGAGACACGTCAATTCCA
ACGATTCTATCGTCTTGCTCCGTTTATGGGAAAACAGGAATTATATTTTA
TTATACGTTTTTTCCAGGGTTTAAAAAGCACTTCTTTCTAAAATAAACTT
TTTATGTTGCTTCTTTTTCAGAGATTTAAAGCCAGAAAATATTTTACTGG
ATGATGTAGGTGAGTGAGACAAAAATATCGTATTCGATTTTGATCTTAAA
CTCCACTCCCTTTTTTGGGGAAATACGGAAAAAAATTTTCTTTATTACCC
TGATAAAGGTTTGAATAAAATTTTGCAAAGATATACCTAGCAAAATCGTT
TTTAGATAACCTGTTCAAAGACAATGTAATTAGAAAGAGTAACCTAAGTT
TTTCTAAAATCTAAAAGTTTTTGTCCGACCAATATTTTTGCGCGACTTAA
ATTTATCCCGACTTATTCTTCCCCGACAGGTTTATCGTAAAAATATAGGA
AATAAATAAAAGTGTTTTAAAATTTTCGTGATTCTCATTATTAGGTCATA
CAAGGATATCAGATTTGGGCTTGGCAATATATGTTCCAGAAAACGAAACT
GTTAAAGGACGTGTTGGTACTGTCGGCTATATGGGTAAATATCTTTTACT
GTCTTTCACTATGTTCAGGTCTATCTAAGCATCTATACCATTCTCCATTT
TAAAAGGTGAAATCTGTTTTTCGGGAGCTAATTCGAGGCTTTTCTGTCGT
TTAATAGACAAACGCTCAAATAACTTTCACTTCTAACCATGCTTATCAAT
GTTCAATCAATACAAGAAGTTCATCTTGTCTGTCACACATGTATTTTTCT
TGAAGTCCATAAAAATTAATGACCTGAAGTTTTCAATCTAGTATCATGTC
TCGTAAAAAAGCTCGAAAATTAACTTTTTATTGTTTATTTTTAAGCTCCC
GAAGTAGTTCGAAATGAACGTTACAAGTTCTCACCGGATTGGTGGGGTGT
GGGATGTATCATTTACGAAATGATTCAGGGAAAGGTACGCCTAATTCTTA
TCGTTAAAAAAAGGATCATTCTGTTCACATAATACATTTAGCTCGAGCTA
CAACCAGCGCCGAAATAGATTGGCAATTTTGGGTGTTTTAACTTGTTTTT
CAGAATTTATAAAATCTCGGGCGAGAATTGCAATATCAGTACTTCCACTT
TGTTTTATTAGATTTTTCGATTTGGGAAGGGTTAAATGGCTTCCAGGCTA
TATTCTCAGCCTCATTGGAACATTTTTGAACTAAGATTAGTCTTAGGTCT
AATGTTAAAACTCAGATATGAAAATCTAATTTCCAACCGTATTTTAAAGC
ACTTAAAGATCACTCGCGGTTTTAAAGTATTGAGGGAATTCCCCTTTTGT
TCCAAATATTATGCCAGTGATTGTAGATGCCGAGGAAATGATAAGAAAAT
TAAAGGCAATAAGTACAACTGAGTTGTAATAACGAAATTCGAACGTTCTT
GCAACTTTTTTTATTAAACTTCAATTTCAGGCTCCATTTCGAGCACCTCG
TGAAAAAGTCAAGCGAGAAGAAGTGGACCGACGTGTCAAGGAAGACAAAG
AGCGATATTCTGATAAATTCAGTGATGGCGCAAAAGCTATTTGTCAAACT
GTAAGTATCTTCCACATTGGACCTCATGTTAAGTTTTGTATGACACGAAA
AAACTACTTTTGATAGAGTATTTTCCACCACTCAAAATTTAACCGCTGAT
TAGAGAATTTATTTCCTCTTTTTTTAAGCTACTGGCAAAAGATCACAACG
ATCGATTAGGATGTCGTGGCACAGACGACCATGAGCAAATCAAAGGCCAC
GAATTTTATAACTCAATCAACTGGCAACATCTGGAAGCTGGAAGAGCTAA
ACCTCCTTTCCCCCCAGACGTGAGTTTGTGTCTACCAAAAAGGTTGCACG
AATCCCCTCTATGTTTCATATATGGGATGTTAATCCTACATAAAATTCCC
GTCCGATAGTTTCCCCAAATTTGAGGATAACCTGTTTCGATTTTCTTTAA
AAGGTTTAGAAATCTAATGATTGTATTAACTTCTAGCCATTCGAAAAAGT
TATTCTTTCTTTTGATCAAAGGTGCTGTGTAAGCAAATGATAGGAGATGT
CCTTTAAGTGTCTCTCTTCTATGAAGGTTTTGATGAAATCTACTCTGTTG
TCTTAACACGCGTGTTTTGCTACATTAGGGAGATAACTGAATACCAGAGC
AGAACAGTCATCAATCACACAGCTCTCTCAAGTGACCTTTTAAATATTTT
CAAATACATTCTTTTCAGACAGGGATTCTATAAAAAACTATCCGAACTAT
TTTTCAGTTCATGCACAGCGTTATTGAGTAGCTTTATTTATAACTTTTCA
TTGTATATTTTAGCCACGTGCTGTTTACTGTCGAGACGTCTTGGACATTG
AACAGTTTTCGACAGTGAAAGGAGTTCAGCTTGATGAAACTGATGATCAA
TTCTATAAAAAATTCGCATCTGGCTCTGTTGCTATTCCCTGGCAAAAAGA
GGTATATTTATTTCGGACCTTTTTATAACAAGAATATTTTTTTTTTGCAA
TTTTGAACTTTGAGCACTTGCAGTTTTCTATTTATAGGTTCTTTGTCAAC
TCGTTTAATTTTGCTCCCGCCAATTGTTGTCCGTCAGAAAAATAATTCCT
CATATTTTTTCCTTATTTTTGATCGAAAGGGTTTTATTACGATTAGGTTA
CATTTTCCGGAGCAAATTCTGATAATTCTGCACTGGCACTTATGCACTCT
ATGATCATGGCTCCGTAAGAGAATCGGTCCAGTTTGGTGGACCGCTCTGA
TCNTAGGTTGCACGAATCCCCTCTATGTTTCATATATGGGATGTTAATCC
TACATAAAATTCCCGTCCGATAGTTTCCCCAAATTTGAGGATAACCTGTT
TCGATTTTCTTTAAAAGGTTTAGAAATCTAATGATTGTATTAACTTCTAG
CCATTCGAAAAAGTTATTCTTTCTTTTGATCAAAGGTGCTGTGTAAGCAA
ATGATTGGAGATGTCCTTTAAGTGTCTCTCTTCTGTGAAGGTTTTGATGA
AATCTACTCTGTTGTCTTCCCACGCGTGTTTTGCTACATTAGGGAGATAA
CTGAATACCAGAGCAGAACAGTCATCAATCACACAGCTCTCTCAAGTGAC
CTTTTAAATATTTTCAAATACATTCTTTTCAGACAGGGATTCTATAAAAA
ACTATCCGAACTATTTTTCAGTTCATGCACAGCGTTATTGAGTAGCTTTA
TTTATAACTTTTCATTGTATATTTTAGCCACGTGCTGTTTACTGTCGAGA
CGTCTTGGACATTGAACAGTTTTCGACAGTGAAAGGAGTTCAGCTTGATG
AAACTGATGATCAATTCTATAAAAAATTCGCATCTGGCTCTGTTGCTATT
CCCTGGCAAAAAGAGGTATATTTATTTCGGACCTTTTTATAACAAGAATA
TTTTTTTTTTGCAATTTTGAACTTTGAGCACTTGCAGTTTTCTATTTATA
GGTTCTTTGTCAACTCGTTTAATTTTGCTCCCGCCAATTGTTGTCCGTCA
GAAAAATAATTCCTCATATTTTTTCCTTATTTTTGATCGAAAGGGTTTTA
TTACGATTAGGTTACATTTTCCGGAGCAAATTCTGATAATTCTGCACTGG
CACTTATGCACTCTATGATCATGGCTCCGTAAGAGAATCGGTCCAGTTTG
GTGGACCGCTCTGATCTTTTTCTTGCAGATTTTGGATGAATATTAAATGC
TGTCCATTCGCTCTTAATTTCGTTTACAAACATAAGACAAAGCGGTTCTG
ATTGTTTTGGCTGAACAACCAGGTCAGATATTCACATTCACCACACATCC
CTTCAGAGCAGAGCATGGTGTGCGCAGATAGGATGATCTGTTATGAGATT
AGAGAAAACAGTACCTTCTACTGGTGATGTAAAATGGCATATTTACAAAC
GTTCTTTTCTCCGTCTTTTAGATGATCGAGACAGAGGTGTTCAAAGAGCT
TAATGTGTTCGGACCAAACGGCGCGCCGACGCCGGATCTTATAGGCGACG
CACCGCCAGAAGAGCAAGAACACGAACCGAAATGTTGTGGATTTTTTCGT
GGCTCACGTCAGCGGACGAGGGTAAGAAAATAATTTCAGTTTATCTTTGA
AATGTTCTCTGGGAAAGTGAAAGCTATCAATGCGTTGAAAAATGATTTTT
GAGTTAAACATCTGGCATCTTCGGAAAGATGTTGGCCTCGACTTTCTACA
GAAACAACGGTGTCTTAGCTGAAAGCTGATGTATTGCTTTTTCAATTCGC
TAATTTCATAATGTGACAAATTTTCTCACTTTAAACTTTTAAGTAGCGGC
TACGGACATTTGATGTCATTCAGCACTGATTGAACTTTGACTTTTACCTT
GACTGAAATTTGCGGATTTTTATTCCCATTGCAGTAGACTCGAGTTTTCG
CGTTTTCTGCTAAGAAACTTGCAGTTTGGGTAAATTTTCTATTTGAAAGG
TATTTTGAACCAATTTTTTAATTCTTTCTAGACGGCACAGACTTATGTGG
CTGATCAGGAGCCTTCTACAAGTAGCGGGTAAAGTTGACGGAAAAGAACT
GCTACAAATCTCAACGTATGGGGACGTGTGTCACACTTAGATAGAATGTC
GTTCACTCACATTGGCCAATGGTGGATAGGAGGCTCTAGAAGAAATGAAC
TCGTCGCTTCAATCAGATCACCATTCATACAAGCACCAATTGTTTTGGTT
GGGCTACATCTTTTAGAGTACCTTCAAGATATTTTTTGGAATCAAAAAGA
TTAGCACGAAATGGTTGATCATTGAGTATTTTCCATAGAATATTCACCAA
TGACATCTTCGCACGGTGCGAAATATAAACAAAAATTGAACAAGCAAAGT
AGATATATGTTATTTTTTTAGAAATTGCTACAAGAGAAAGAGGACAATAG
GCAAAACGAAATTTATTGTTATTATTAATATTAAAGATATGATGGACACA
AAGAAGATATGACTATGTGTTTATCATATTGAAATTTTACAATTTTTTTA
TTTTTTGCCATTGCTTTATTTTATTCTGTTTTAATTAATTATAAAAGGTA
GATTCCGCATTTTAGCTTTGAATTAATATTTTAATAATCAATATGTCGAT
TATTTTTCCTCTGGAATATAGTAATTACTTCTTACCAGATTTTTGATATA
GTAACAAAGCTACATGGTAATTTCATTGGGATTGTTCTGTTGTTATTTTA
GTTCTGCAGTTATTGAAGAAATTTTCATAATGCATTTTTCAGCCATTCTG
ATTTATGACTATTTTAAACTGTGGTATGCTACACCATATTACAAGATCCA
CGAAATTATATTCCAATTTCTTGATACCATGGTTTGTTTTTGTTTTAATT
TTATCGTGTATAAATATTGTTTATCGTTCACTCCTTTATATCTCTAACCA
AATTATGCTTATCTTCTTGATATCTATGGGGGGGTTGCATTTCTCCTATT
GATAAAATTTCAAGCACTTTAAGAAAAATAAAACGAATCAATTTTTTTGT
AATACAATTTCACAAATTTTATCATTTTTTTCAATGTACATGATGAAATT
CGGGAAAACTAACACTATTAGAAAGAAGTTTATTTCTATCTTAGCATAGC
AAAATTTATCTTTTTATTATCATTTTACTTACATAAAGTAGAAACTTTAA
AATTGGATTTTTTGAATTTATTGACTTGACCTCCAAGTCGACAATTCTTT
TCTCCATAAATTTATCGGTTGCTTTATATTTGCCTAATTGACGGCTGAGG
TATTTAGATTGCAACAATTGAAAAACGCACGCAGGCCTTCTTAGTAACTT
TCATAAACTCTCTCAATCTTCTTTTAAAAGCGGTGTGGGGAGTTTTGCGA
ANGGCTGAGGTATTTAGATTGCAATAATTGAAAAACGCATCAGGCCTTCT
TAGTAACTTTCATAAACTCTCTCAATCTTCTTTTAAAAGCGGCGTGGGGA
GTTTTGCGAAATCTTTCGATTTTCACATGGAAAATAGTTGAAAATTATAT
AATAATATCATTTATAGACTCTTCTAAGCTGACATTCTCTTACAACTAAT
AACTGCCAAAAGCCGGGCAAGCACTAGCGGACAATATTCGCACTACCTCT
TAGTACCTACTTGCAGGTAAAGGGTTTCGCACTGCTCTGTCCATCTCTAA
CCCATTTCACAATTAGGCAATTAATTAAGTATGCTACCATTGCACTGTCT
CGCTAACCAATATCTTTAGAATGATTTATTAGTCAAGATTTTTTGTTTTA
TTTTGATTTAGTTAATACACAAACAGTTTGTATTATATATCTAACATCCT
GGGAGTGTGAATTCTAGGTATGGGTGAAACGAAATTTACTGATAAAAAGT
GCATGAAAAGATTGTACAAATTTATTTTAACAGATTACTCAAAAGAAAAT
TTCTATTAGAATATTTAAAACGCTTTAAACTTATTTTTTTATCCCAAAAT
ATATATACAAAATAAGTATGTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029555XLOC_029555Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046287-exon-scaffold_108-1575043694:360734..361102TCONS_00046287-exon-scaffold_108-1575043694:360734..361102Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1575043694:360094..360131TCONS_00046287-exon-scaffold_108-1575043694:360094..360131Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1575043694:359669..359758TCONS_00046287-exon-scaffold_108-1575043694:359669..359758Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1575043694:359269..359357TCONS_00046287-exon-scaffold_108-1575043694:359269..359357Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1575043694:358653..358772TCONS_00046287-exon-scaffold_108-1575043694:358653..358772Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1575043694:358384..358524TCONS_00046287-exon-scaffold_108-1575043694:358384..358524Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1575043694:356838..356975TCONS_00046287-exon-scaffold_108-1575043694:356838..356975Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1575043694:356132..356281TCONS_00046287-exon-scaffold_108-1575043694:356132..356281Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1575043694:353729..355721TCONS_00046287-exon-scaffold_108-1575043694:353729..355721Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1510915933:360734..361102TCONS_00046287-exon-scaffold_108-1510915933:360734..361102Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1510915933:360094..360131TCONS_00046287-exon-scaffold_108-1510915933:360094..360131Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1510915933:359669..359758TCONS_00046287-exon-scaffold_108-1510915933:359669..359758Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1510915933:359269..359357TCONS_00046287-exon-scaffold_108-1510915933:359269..359357Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1510915933:358653..358772TCONS_00046287-exon-scaffold_108-1510915933:358653..358772Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1510915933:358384..358524TCONS_00046287-exon-scaffold_108-1510915933:358384..358524Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1510915933:356838..356975TCONS_00046287-exon-scaffold_108-1510915933:356838..356975Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1510915933:356132..356281TCONS_00046287-exon-scaffold_108-1510915933:356132..356281Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1510915933:353729..355721TCONS_00046287-exon-scaffold_108-1510915933:353729..355721Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1491911889:360734..361102TCONS_00046287-exon-scaffold_108-1491911889:360734..361102Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1491911889:360094..360131TCONS_00046287-exon-scaffold_108-1491911889:360094..360131Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1491911889:359669..359758TCONS_00046287-exon-scaffold_108-1491911889:359669..359758Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1491911889:359269..359357TCONS_00046287-exon-scaffold_108-1491911889:359269..359357Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1491911889:358653..358772TCONS_00046287-exon-scaffold_108-1491911889:358653..358772Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1491911889:358384..358524TCONS_00046287-exon-scaffold_108-1491911889:358384..358524Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1491911889:356838..356975TCONS_00046287-exon-scaffold_108-1491911889:356838..356975Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1491911889:356132..356281TCONS_00046287-exon-scaffold_108-1491911889:356132..356281Clytia hemisphaericaexon
TCONS_00046287-exon-scaffold_108-1491911889:353729..355721TCONS_00046287-exon-scaffold_108-1491911889:353729..355721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:353729..361102 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.96765	4.91271	1.81651	1.79737	25.2905	18.5148	25.8281	27.6587	35.2311	20.0903	16.1433	7.85237	20.6037	11.5383	12.3248	12.7797	16.7699	16.1553	10.827	13.4523	15.4646	12.8605	16.2768	15.1771	12.5404	23.4275	14.1991	12.1745	18.9603	21.2545
Blast
[Close]
BLAST of TCONS_00046287 vs. Swiss-Prot (Human)
Match: GRK5 (G protein-coupled receptor kinase 5 OS=Homo sapiens GN=GRK5 PE=1 SV=1)

HSP 1 Score: 403.675 bits (1036), Expect = 2.904e-127
Identity = 202/296 (68.24%), Postives = 243/296 (82.09%), Query Frame = 2 
Query:  188 AYAHETKDALCMVLSLMNGGDLKFHIHNIGNPGFEEKRAVFYAAEITSGILYLHSSRIVYRDLKPENILLDDVGHTRISDLGLAIYVPENETVKGRVGTVGYMAPEVVRNERYKFSPDWWGVGCIIYEMIQGKAPFRAPXXXXXXXXXXXXXXXXXXXYSDKFSDGAKAICQTLLAKDHNDRLGCRGTDDHEQIKGHEFYNSINWQHLEAGRAKPPFPPDPRAVYCRDVLDIEQFSTVKGVQLDETDDQFYKKFASGSVAIPWQKEMIETEVFKELNVFGPNGAPTPDLIGDAPPE 1075
            AYA+ETKDALC+VL++MNGGDLKFHI+N+GNPGFEE+RA+FYAAEI  G+  LH    VYRDLKPENILLDD GH RISDLGLA+ +PE + ++GRVGTVGYMAPEV+ N+RY  SPD+WG+GC+IYEMI+G++PFR  +EKVKREEVDRRV E +E YS KFS+ AK+IC+ LL KD   RLGC+  +   ++K H F+ ++N++ LEAG   PPF PDPRAVYC+DVLDIEQFSTVKGV LD TDD FY KF++GSV+IPWQ EMIETE FKELNVFGPNG   PDL  + PPE
Sbjct:  250 AYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGDLIRGRVGTVGYMAPEVLNNQRYGLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYSHKFSEEAKSICKMLLTKDAKQRLGCQ-EEGAAEVKRHPFFRNMNFKRLEAGMLDPPFVPDPRAVYCKDVLDIEQFSTVKGVNLDHTDDDFYSKFSTGSVSIPWQNEMIETECFKELNVFGPNGTLPPDLNRNHPPE 544
The following BLAST results are available for this feature:
BLAST of TCONS_00046287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRK52.904e-12768.24G protein-coupled receptor kinase 5 OS=Homo sapien... [more]
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