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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046283 ID=TCONS_00046283|Name=TCONS_00046283|organism=Clytia hemisphaerica|type=transcript|length=2152bp
ATACAGGAAGAATAAATTAGAATTTGAcctaaacaaaaaagaaaactgaa
aaaataacagaaacattacatcatcaaaacaaagatggcagatacaGTTA
CAGAGGAGTCTGGACAAGAGTCTTGTTGGTCGTCATCTGATGAGAGATCA
TCTGGTAATGAATATTCAGTCAAAATGAAGAATGAAAAACTTCCCGAAGA
CGAAGCACTGAAGGAGCTGTAtcggaaaaagaagaagaaaaagaaacata
aacgaAAACACAAGAAGAAGAAAGATCGGACTGCTGATTCCTCAGATGAA
GAAGATCAGAAAGAAGGTGAAggtaaaaagaacaaagaagaaaagaagaa
agcaAATGGCGTCATTAAAAGCAATCAATTGTTGTTGAAAGTAGACGCCA
TCTTGGAGAGTGCACTGTCAGCAGtcgaagagaaaaacaacatcaaGAAA
GATTCTAGTATTAAAGACACAAAGAAAACTGTTGTCGAGGATGTTAAGAA
AAATTCCAACAAAGACAATAAACGAACTTCGAAGACCCGATCAAGGTCGA
AAGATCGAGGTGAATCGAAGAAACATTCTCGTTCAAAGTCGAGAGAGAAA
AGAAAGCGTTCGAGATCTAGAGATCGAAAAAGAAGTCGTTCAAGGTCCAG
AGATCGTAAAAGAAGTCGTTCAAGGTCTAAAGATCGAAAAAGGAGCCGTT
CTAGGTCTAAAGATCGAAAAAGAAGTCGTTCTCGGTCCAGAGATCGAAAG
AGAAGTCGGTCCAGATCCAGGGACCGCAGAAGAAGTCGTTCGAGGTCCAG
AGACCGCAGGCGATCACGGTCTAGGGAGCGGCGCAGTCGAAGATCTCGAT
CAAGATCAAAAGATCGGCGTCGAAGGTCGAGGTCACGATCAAGGTCCAAG
GATCGTCGACGTCGCTCCAGATCAAGGTCCAGAGACCGTAGACATAGATC
AACCTCTAGAGATCGCCGTCATCGTTCACGATCTAAAAGTCGAAATAGAG
AAACTGTAGACACTAAACAAGACATCGAGGGTCCAGTACCATCGAAATGG
GACGTTAAAGAAACTGAAGCAATGAGAATAGTTAATGCAGAAACTGACAA
TGTATTTCAAAAAGTATCAGCACTCCGTAGATCCGGAATTGAAATCAAGT
ACGGGAACACAGTACCGGGTAAAGATGCACGGGATATTCTTAACGCAAAA
GCTAAATCATCATCCACCTCTAAGAAAGAACGCTCAGATCCATATGGGAA
ATGGGAATCAGTGCCCGATGGTGGAAACCGTGATTTGAATAAATTCACAA
AACTGTGTTTAGAAATTTCAGCCAAAGATAGCAAATACGATAGCCATCTT
GCTGATAGTAGGCGGAGTAGTGACGATGATGAAGCTGAGATCCACCATCC
ATTCATATCGAAGCCAGCACCCATGATGTTCCCATCTTCCTCAGGAGGGT
ACAGTGGAAGTAGTAGAAGCAGGATTGCTATGgttGAAGACAACACAATG
ATTATTGAGCAGTTCTCCATCAAGCCTTCTTGTCGCAGTAGCGCTCTCAG
CACTCTAGAAGGAGCAAAATTTCatatcatttcaatttttaagaacaaac
caGAAATCTGTGGAAAGTGTTTACCATACACCTATCAATCTAAGATTTGC
TTCGAGTTTACTTGGattgaatgaaatttttcaacccTGATGAGCTCAAA
TCAGATCCCCTTTTAAACAGCCACTCCGTGTATAGATATCTCTTAGATtg
gcttgaatatttttatgaaattttgctcCATCAAAGATGATTGGCAAACA
TAGAGTGCTGAAAACGCTACTGCCtcttatatatatataaagaACTTTCC
CGATTTCTGTTTTTTGTGGAATAATTCACAGTTCCAAATATGTGTTTTTC
TCGCTTTTTCAAGAAATCTGGAAAGTTCTTTTCATTCCTGATACTCCAGG
ATATTCTTAAGCTTGATTCTTTCCGTGGCATAATCTTTTAGCATATATGA
TAGAAGTCATAACATGATTGTGTCATAGAGCAAAATCAAACTTAAGCATA
TCATGGATGGAATTAAAGTCCATTCGTTTTAAGTGTGCACTGATTCTTAT
TTTGCTTAGCATTTTTCAAACAATGCtttaaaaaacactgttttttgctg
ct Run BLAST on NCBI transcript from alignment at scaffold_108:284111..289742- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046283 ID=TCONS_00046283|Name=TCONS_00046283|organism=Clytia hemisphaerica|type=transcript|length=5632bp|location=Sequence derived from alignment at scaffold_108:284111..289742- (Clytia hemisphaerica)
ATACAGGAAGAATAAATTAGAATTTGACCTAAACAAAAAAGAAAACTGAA
AAAATAACAGAAACATTACATCATCAAAACAAAGATGGCAGATACAGTTA
CAGAGGAGTCTGGACAAGAGTCTTGTTGGTCGTCATCTGATGAGAGATCA
TCTGGTAATGAATATTCAGTCAAAATGAAGAATGAAAAACTTCCCGAAGA
CGAAGCACTGAAGGAGCTGTATCGGAAAAAGAAGAAGAAAAAGAAACATA
AACGAAAACACAAGAAGAAGAAAGATCGGACTGCTGGTATGATGAATATT
TTGTCCCCTTTCATTTTCAAAGTTTGAATCTCAGACCTCTATAGATGTAC
TTCTACAAGAAACTTATTCATTTCCCTAATTTTCAGATTTTTATTCCAAT
CTTAATCTCCATAACTCGAACACGCACGGATAACGCAGATTTGTTTGAGT
TACTGACTAAGGTTTATAAGGCGTTGTTAGCTGGAGGGACCATAAAACTC
GTTCGATTTATGGAGACATTCGAGTTATAGAGGTTCGAGTTAAAGTGACT
CCACTATACTGTTAAATTATAAAAACATAAGAATAATTCAGATGCTGCAG
GCCAGTCTCACTAGAAAATCTACAAAATAAGTAGATGTATAAATTTTCTT
AATTCTGCGGACGTCTGTAGAATTACGGCACTCTTTAATATCGACATATA
ATGTAGAATATAGAATTCAACTGATTTTGTAGATATTCTAGAACGATTTC
ACTTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAGCTCCA
AACCCCTGACCCAAGAACTTTTGTAGTGACGAGTAAACAGTCTAACTGAC
GAGTTAGGCTAACTGTCTAGATCGCTATTTATCCGGTATTATTCTGTAGA
AATTTTAAATTTACACCATCTACGTATTCTGTAGAATTATGTGTGATAAT
GTGTTGGATGCTGATAAAAAGCATGTAACCGCACCCGTATGCGGTACCCA
ATAACTGAAATTTGGTGTTACTGTTCAAAACTTCATGCTTTTATCACCAT
CTGAAGTATTTTTGGTGCTAGGAGACCTCATTGATACACAAAAACGCTTT
CATTCCACTGTTTTTGAAATTTTGATTTTCTTTGTAGATTCCTCAGATGA
AGAAGATCAGAAAGAAGGTGAAGGTAAAAAGAACAAAGAAGAAAAGAAGA
AAGCAAATGGCGTCATTAAAAGCAATCAATTGTTGTTGAAAGTAGACGCC
ATCTTGGAGAGTGCACTGTCAGCAGTCGAAGAGAAAAACAACATCAAGAA
AGATTCTAGTATTAAAGACACAAAGAAAACTGTTGTCGAGGATGTTAAGA
AAAATTCCAACAAAGACAATAAACGAACTTCGAAGACCCGATCAAGGTCG
AAAGATCGAGGTGAATCGAAGAAACATTCTCGTTCAAAGTCGAGAGAGAA
AAGAAAGCGTTCGAGATCTAGAGATCGAAAAAGAAGTCGTTCAAGGTCCA
GAGATCGTAAAAGAAGTCGTTCAAGGTCTAAAGATCGAAAAAGGAGCCGT
TCTAGGTCTAAAGATCGAAAAAGAAGTCGTTCTCGGTCCAGAGATCGAAA
GAGAAGTCGGTCCAGATCCAGGGACCGCAGAAGAAGTCGTTCGAGGTCCA
GAGACCGCAGGCGATCACGGTCTAGGGAGCGGCGCAGTCGAAGATCTCGA
TCAAGATCAAAAGATCGGCGTCGAAGGTCGAGGTCACGATCAAGGTCCAA
GGATCGTCGACGTCGCTCCAGATCAAGGTCCAGAGACCGTAGACATAGAT
CAACCTCTAGAGATCGCCGTCATCGTTCACGATCTAAAAGTCGAAATAGA
GAAACTGTAGACACTAAACAAGACATCGAGGGTCCAGTACCATCGAAATG
GGACGTTAAAGAAACTGAAGCAATGAGAATAGTTAATGCAGAAACTGACA
ATGTATTTCAAAAAGTATCAGCACTCCGTAGATCCGGAATTGAAATCAAG
TACGGGAACACAGTACCGGGTAAAGATGCACGGGATATTCTTAACGCAAA
AGCTAAATCATCATCCACCTCTAAGAAAGAACGCTCAGATCCATATGGGA
AATGGGAATCAGTGCCCGATGGTGGAAACCGTGATTTGAATAAATTCACA
AAACTGTGTTTAGAAATTTCAGCCAAAGATAGCAAATACGATAGCCATCT
TGCTGATAGTAGGCGGAGTAGTGACGATGATGAAGCTGAGATCCACCATC
CATTCATATCGAAGCCAGCACCCATGATGTTCCCATCTTCCTCAGGAGGG
TACAGTGGAAGTAGTAGAAGCAGGATTGCTATGGTATGCCTATCTTTAGT
TTTATTGTTTCTTGAGTTTGAACCTTCTATTCAACTCGGTACTCTTTGGC
AGCTACTTGTATGAGTGATCTTATTTGCTTAAAAATTGATGTTTTAGAAC
TAGGTTTTTTATGTTTGGTTAAGTATCGTCGTTTCCACCATTATGGAAGC
AAACGTTCTATTTGCGTCAGGGCAGGGGAGGGCACCACGTTGTGGTACTA
GACCAGTGCCGAAAAGTTGTACTTTTCTTATTTTTTGAAATTTACCTAAG
ACTACCACCACTTAGTACCCTGGTACTAAGTTGAACTTACCCCTTAAAAT
AGGTATACCACCCCTTAGTACCCGGTACAATCTTGATATGACCATTGAGA
AATTTTACTATCGACCCCCCCCCCCCCCCCTCCCCCCCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTAAAATCTCAGACATATA
TGAGTAGTAAAAGGATTTTTGCGAATTTTTACATACCACCACCCAGACTC
TTGGAAGAGGTATTTTACTACCCTGGTAGCAAAAGTTTTTGGGACAATTT
GTCATGGAGACAGTCTTTTCGGACTTATTTTACAAAAAAAGCTAAAAAAT
TATTATTTCTGCGACACATTTTTCACTTAGTGCAAAATCTAATGTTTTGC
CCTTAGAATTGAAATCTTTTTTATATATTAACAAAAAATTTCGAGAATTT
TTTGTTTGCAGCAAACAACTTTCCAACGGAAAATTTTTTCAAATTATAAA
CATTTTCAGCTTTTTTCAGAAAAATAGCTAAAATTTGCTAATTTTACCAG
TTTTAACTACCCAGGTTGGAAAAATATTTAAAAATTTAACACATAGATAC
CACCCATTTTAGTATTTAACTACCCTGGGTAGTAAATTGTTTTTTAGATT
TTTCGTCACACCCCCCCTGCCGTTAAGTACCCTGTATTAAGTTGATTTTC
CCCCTCAAAATAGGTATACCACCCTTTCATTTTTAGTAATGGTACTTTCT
GGTACACCTCCTTTAAATTTTCTAAAAAGCTTCCTTTTTATGAAGAAGTG
GTGGTTTCCCCCTCATTTTGGTCATAAATCGCTTATAAAATAACACTTCT
ACATCAAATAACTCCCATTCAGTACAGAAATCAGCCATGCTTGCTTAAAA
GTCTTCTATATAGTTTTTCAAGAGCTTTCAGATTCTATAATTGGTTTTGG
CCTAAAATGAGTTTGAAATCTCCATAAAAAATGAGCTCTTGGGCTTTACC
CTAGGTTTAAATAAATGGGTCCAGAAATAAGGGCTACCCTTAAGTCTTTT
ATTGGGTTGCCCTTCTAATATCAATCCACAGGGTATTAGGCATGTCTGGT
CCAAATTTGGTGCTTTGTTCCAAATTTGCACGATTTTTACACTAATCAGG
CCTACTTTGATAACACCCAGGGGAAAACAAAAAACAAAAGTTTAATAAAC
AATAAACGTAATAAACATCCTAATGAAATGGTAAGAAATAAATATAGACT
GCCTACAATAAGATTTTTTTTGTGATTTTTCAGGATTTTGAGTACCAGAT
ACTAACTTGATGCCTCATATTTGGTATTGAGACCACCATTTAGTCCGCCT
TGATACAAAGTTGCAAAAATGTTTTTTTCAATAAGGACCACCACTTAGTA
CCATGTACTAAGTTGTTTTTTACTTATCTTATCAGACCACCACCCGGCAC
TGGCCCCCACAACTTAGTACCAACCCCCCCCCCTGTCAGGGATCGCTTCT
ACAGCCTCGAACGTATGCTTCCAAAATGAATTACAATATTTAGACAAACA
TGAAAAACCTATTTAGATGGAAATGAATGGGAATTTTCGCATGAAAATAG
ATACGCTCTACAATTAGCTGTCACAGGTGAACCTGTATCCGCTGTAATTT
GTATTTATTTTATCATGGTATTCACGAGTTCTCTATATCCCTGCCTATCT
TTTCAGTTGTGATACTGACCGAACACATGAGTTTTTAATTCTTAATGAAC
CGGTCGAAATGACGTTTGTTTGAGAGCAAAAATACTTGCGTTATGGCGTT
CTTCATTTTTGACTCTAGTCTACTAGGAGTAACTACGTGAAAATGCTTCT
ATAATTAAGACGGTTAAGAGCAGCGGCTTTCTTTTATCACCACCTTCACA
CGATACGGTTCCGTTTCGTTCCTACATGAAAAGTAGTCATTCTATTGGTT
GAATTTAATTGTTACTTCACTTCTCACCAATAGAATGACTTCATTTCGTT
TCGGGGCGAAACGGTACCGTAACCTGCGAATATGGTATAAAACTAATGAA
TTTCCGTAAATTGTAGGTATCACAGGACTCGTGAACATCATGAATGTATA
TTTTATTTTTAGGTTGAAGACAACACAATGATTATTGAGCAGTTCTCCAT
CAAGCCTTCTTGTCGCAGTAGCGCTCTCAGCACTCTAGAAGGAGCAAAAT
TTCATATCATTTCAATTTTTAAGAACAAACCAGAAATCTGTGGAAAGTGT
TTACCATACACCTATCAATCTAAGATTTGCTTCGAGTTTACTTGGATTGA
ATGAAATTTTTCAACCCTGATGAGCTCAAATCAGATCCCCTTTTAAACAG
CCACTCCGTGTATAGATATCTCTTAGATTGGCTTGAATATTTTTATGAAA
TTTTGCTCCATCAAAGATGATTGGCAAACATAGAGTGCTGAAAACGCTAC
TGCCTCTTATATATATATAAAGAACTTTCCCGATTTCTGTTTTTTGTGGA
ATAATTCACAGTTCCAAATATGTGTTTTTCTCGCTTTTTCAAGAAATCTG
GAAAGTTCTTTTCATTCCTGATACTCCAGGATATTCTTAAGCTTGATTCT
TTCCGTGGCATAATCTTTTAGCATATATGATAGAAGTCATAACATGATTG
TGTCATAGAGCAAAATCAAACTTAAGCATATCATGGATGGAATTAAAGTC
CATTCGTTTTAAGTGTGCACTGATTCTTATTTTGCTTAGCATTTTTCAAA
CAATGCTTTAAAAAACACTGTTTTTTGCTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046283-exon-scaffold_108-1575043694:289457..289742 | TCONS_00046283-exon-scaffold_108-1575043694:289457..289742 | Clytia hemisphaerica | exon |
| TCONS_00046283-exon-scaffold_108-1575043694:287260..288455 | TCONS_00046283-exon-scaffold_108-1575043694:287260..288455 | Clytia hemisphaerica | exon |
| TCONS_00046283-exon-scaffold_108-1575043694:284111..284780 | TCONS_00046283-exon-scaffold_108-1575043694:284111..284780 | Clytia hemisphaerica | exon |
| TCONS_00046283-exon-scaffold_108-1510915933:289457..289742 | TCONS_00046283-exon-scaffold_108-1510915933:289457..289742 | Clytia hemisphaerica | exon |
| TCONS_00046283-exon-scaffold_108-1510915933:287260..288455 | TCONS_00046283-exon-scaffold_108-1510915933:287260..288455 | Clytia hemisphaerica | exon |
| TCONS_00046283-exon-scaffold_108-1510915933:284111..284780 | TCONS_00046283-exon-scaffold_108-1510915933:284111..284780 | Clytia hemisphaerica | exon |
| TCONS_00046283-exon-scaffold_108-1491911889:289457..289742 | TCONS_00046283-exon-scaffold_108-1491911889:289457..289742 | Clytia hemisphaerica | exon |
| TCONS_00046283-exon-scaffold_108-1491911889:287260..288455 | TCONS_00046283-exon-scaffold_108-1491911889:287260..288455 | Clytia hemisphaerica | exon |
| TCONS_00046283-exon-scaffold_108-1491911889:284111..284780 | TCONS_00046283-exon-scaffold_108-1491911889:284111..284780 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_108 | supercontig | scaffold_108:284111..289742 - |
Blast
The following BLAST results are available for this feature:
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