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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046254 ID=TCONS_00046254|Name=TCONS_00046254|organism=Clytia hemisphaerica|type=transcript|length=997bp
GTTCAACACCGTTGCTACtagtttgttgttgttgttgctgatTGGATGGT
TGTGTTTGTTGTGATGATTCTTGTGTTGTTTGTtgctgttgctgttgttg
ttgttgttgttgttgtaagtGCTGTTGTAAGATGAGTTGAGATACACCTG
TCGCGCCTTGTTGTTGTAAAGCTGACGTTGGGATTCGAACGTAATGTACC
TGGCCACCGGAGCTCAATTGTACCTGAGTTGTGTTTGATTGAGCTTGACT
TGTGCTCAGTTCAGTAGATTGTTGTTGCACAACATTTGAAGTCGATTGTT
GCACAGCACTCTGTGTCCCCTCAGCTGACGCAGGTGTTGTTGATGTATTC
TGTTGGGCGGCTTGTGGCGGGGGTTGGGCAAGCTGAACAATCTGTGGTTG
AACTGCACCCTATTTGTTAAATAGTTGTTAAATTAGCTAATTCTAGATTG
CGTGGGCCCGTATAAAATggaatttcagaagaaaaagatttaattGAGGT
TAAATTTAAAAtgacaagcaacatgctgaccTGATACAGGTAGTCGAAAA
CATGGTGATTggcaatgaaaatattttgacgaaaaaggaaaaataacagC
ATAGCACAGAGAAGCGTAAGCTTGAAAACATGAAGAAACTTGTTTTACAA
TGGATTTCCGAtgttttagagataggaatccCCATTTTTTTGGAAGTCAA
ACCATGCTAAGTAACtcaacaaaatcaaatgaaTTTTGACAAAAGCCCAA
AATCTAGCCCATATTTTCCACTTCacccaaaaatttcttttgtatatCGG
ACTCACTTTTTGGGtactgtcattttgcatcactatgcaaaaaatctgaa
aaaactaatgggcCGATCCCGAGAatagctggtaacagacgaacgggcGA
ATGAACAAAGGTTAGTTTAGACCTCTAAAGTAGGACTAAAAATGTAAAGA
TTTTTGAGgcatttgattaaaaaaacaaagaaaaaatgtggaatttc Run BLAST on NCBI transcript from alignment at scaffold_108:383220..385177+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046254 ID=TCONS_00046254|Name=TCONS_00046254|organism=Clytia hemisphaerica|type=transcript|length=1958bp|location=Sequence derived from alignment at scaffold_108:383220..385177+ (Clytia hemisphaerica)
GTTCAACACCGTTGCTACtagtttgttgttgttgttgctgatTGGATGGT
TGTGTTTGTTGTGATGATTCTTGTGTTGTTTGTtgctgttgctgttgttg
ttgttgttgttgttgtaagtGCTGTTGTAAGATGAGTTGAGATACACCTG
TCGCGCCTTGTTGTTGTAAAGCTGACGTTGGGATTCGAACGTAATGTACC
TGGCCACCGGAGCTCAATTGTACCTGTACGAATATAGAATGAAAGATATA
AATAGGACTGCGTTTAATTTGGTAATTATGGATGCAGCCATACCAATCTC
TCTAGTCAGCTCAATCGTAGAGATTCAACCGAATTGCGATGAAACCTTCC
CAAACGGGAAGAATTAGTGagtttttcgaaaatatatCTGCCCCTTTGAG
AAGACTCTTCCTCATCTTGAAGTCgaaaaatgattcaatttcACGTACAA
TGTACAATGTACAATGACCatcgaaaaatgaaacattcttTAAGGTGATA
CAGGggagggggggggtcggtagtaaaatctcagacatatatgagtagta
aaagaatttttacgaacttttacataccaccacccagactcttgagAGAG
GTATTTTACTGCCCTgttagtaaaagtttttgggacaatttgtcatggag
accacctattttttggttgcttttcggactgattttacaaaaaaagctga
aaaaaagctaaaaaatgattatttctgtgacacatttttcacttagtcca
aaaataaatgttttgcccttagaattcaattcttttttatattcaacatg
taacacatagacaccgcccattttagtatttaactaccctgggtagtaaa
aagttttttcgtttttttgtcaCACcgccaccgtagtaaacgtcattatg
tctaaGGCACCTCGAACACTCACCTTATCGGTAAGATCTTTTCCTTCGGG
ATCTATAGTTCTGCCCGTCCGTTAAGTTCTTCCTTCCtattcggaagaat
cttcctgTTCAGGTAGCAGTCGAGACTACTAGGACCAAGGAGGTGTTGAA
GAATATCTGATCGACTTTCTTGACCTTTTGAAATAACAATTTCGGCTTCA
ACGTGCGTCAGAAATAGCAAAATATTTCGcccaaattttcttttgtcgca
caacttaaaaaaaaatctatatgaAACATTGTACCTGAGTTGTGTTTGAT
TGAGCTTGACTTGTGCTCAGTTCAGTAGATTGTTGTTGCACAACATTTGA
AGTCGATTGTTGCACAGCACTCTGTGTCCCCTCAGCTGACGCAGGTGTTG
TTGATGTATTCTGTTGGGCGGCTTGTGGCGGGGGTTGGGCAAGCTGAACA
ATCTGTGGTTGAACTGCACCCTATTTGTTAAATAGTTGTTAAATTAGCTA
ATTCTAGATTGCGTGGGCCCGTATAAAATggaatttcagaagaaaaagat
ttaattGAGGTTAAATTTAAAAtgacaagcaacatgctgaccTGATACAG
GTAGTCGAAAACATGGTGATTggcaatgaaaatattttgacgaaaaagga
aaaataacagCATAGCACAGAGAAGCGTAAGCTTGAAAACATGAAGAAAC
TTGTTTTACAATGGATTTCCGAtgttttagagataggaatccCCATTTTT
TTGGAAGTCAAACCATGCTAAGTAACtcaacaaaatcaaatgaaTTTTGA
CAAAAGCCCAAAATCTAGCCCATATTTTCCACTTCacccaaaaatttctt
ttgtatatCGGACTCACTTTTTGGGtactgtcattttgcatcactatgca
aaaaatctgaaaaaactaatgggcCGATCCCGAGAatagctggtaacaga
cgaacgggcGAATGAACAAAGGTTAGTTTAGACCTCTAAAGTAGGACTAA
AAATGTAAAGATTTTTGAGgcatttgattaaaaaaacaaagaaaaaatgt
ggaatttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046254-exon-scaffold_108-1491911889:383220..383435 | TCONS_00046254-exon-scaffold_108-1491911889:383220..383435 | Clytia hemisphaerica | exon |
| TCONS_00046254-exon-scaffold_108-1510915933:383220..383435 | TCONS_00046254-exon-scaffold_108-1510915933:383220..383435 | Clytia hemisphaerica | exon |
| TCONS_00046254-exon-scaffold_108-1575043694:383220..383435 | TCONS_00046254-exon-scaffold_108-1575043694:383220..383435 | Clytia hemisphaerica | exon |
| TCONS_00046254-exon-scaffold_108-1491911889:384397..385177 | TCONS_00046254-exon-scaffold_108-1491911889:384397..385177 | Clytia hemisphaerica | exon |
| TCONS_00046254-exon-scaffold_108-1510915933:384397..385177 | TCONS_00046254-exon-scaffold_108-1510915933:384397..385177 | Clytia hemisphaerica | exon |
| TCONS_00046254-exon-scaffold_108-1575043694:384397..385177 | TCONS_00046254-exon-scaffold_108-1575043694:384397..385177 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_108 | supercontig | scaffold_108:383220..385177 + |
Blast
The following BLAST results are available for this feature:
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