TCONS_00046252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046252
Unique NameTCONS_00046252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2530

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046252 ID=TCONS_00046252|Name=TCONS_00046252|organism=Clytia hemisphaerica|type=transcript|length=2530bp
gaatagacagggcaaaaatgggccgtctaaactagagcttagaaACATTG
CATTATACctgagaagtttgaaaaaaattgattggcTTTATAAGGAATCT
TACCAGCAACTTCGCCAGCTCTTTTAACATTGGTCGTTAATGAATTCGAG
ATCATTTTACATTTGTGTTCAGGATTGCGAGTCATAGTTTGTATCTAGAA
GAATTTAATATTCGCTTTTCTCATCATGGACCCACATTTAGCTCCCGAAC
ACTAACCTAGCTCGTAGAAGTCACGTTTCTATTTATGAAGCGAACATTAC
TGTGGCCGTAATTAGGTAGTGTTGTTTGTGGCTCAAAGTTTATTTTTACT
GTAGCATGATAATCAGATATATAAAGTTCATTACGGGTATTTTGTTTCTC
TTTTTATCATTGTATGATCCTCATTACTCCTCATTAGATGTACCAATATA
ATGACATAGAGAAGGAACCAATAGGAAAGCAGCAATTAAATGTAGCTTCT
TAACTTATTATGGAAAAAGAATCTGCTAGTAACAATGATGGACGTAAGCC
ATTGTTAAAAAGTCGGAAAAATACGGCCAGCAAGGACAGTGTGTCAAAAC
CATCAACCAATAAGGAACAACAACACGAACTACCGGCTGCTGAGCGTGGT
TGCTGTTGTTTTGATATTGTCAAATTTGCTTTTTGTGGTTTTGTATGTTG
CAAGAAAGCGTGTGGATTTCCGAAAAGCGGACCCGCAACTAAACCAAAAA
CTAGGTCAACACAGGACGTTAATgagaataaatttgaaaaagggaAAGAA
GAATTTGAGTTAAAGTCGCCTACTGAGAAGACTGAGTTGTTATCAGACGT
TGATCATCCCGTTGAGCAGAAGTGTGAAAAGAAGAAGCACTCCTGCGACG
ATCTTTTAAAACCGAATAAGAATCAACAAAGTCCAAAAGTCACTTCTAAA
CAAGAAGCaaaggaaaagaaagaagaagaaggaaaaagtaaagaaaattt
attgaaaaagaacAGTCTATCTACTGTCGACGACGACAGTCGTGTTGAGA
AAAATTCCGAACCACACAAAGAGATTGCTATCAGCTCTGACGAGGAAAGT
GATAAAATAAGTTCTTCGAAAAAAGAAGCTTCCCATCAAACAGATAGCCC
ACCAGACTCATCACGGAAATCTCCCGAAGGTAGCGAAAGGCGTGCATCGA
AAGTTTTTGACGCTGAAACTCAAGTGCCAACACCGAGAAAGGTTTTAGTT
AAAACTGAAAATACTAACCAGAATCAACAACAAGAGTCAAACAAAGGAGA
AATGGTAGCAACAGCCATTACGGGAGCAAATCATTTTTACACGCTCGTCT
CTGAGCCTTTACTTTACACTCAAAGTGATTTGGACGAAGTCATCAAATCT
CGCGAAGAGGAATGGCAAAAGAAATATCTAGAGATCGAAAGCAAGATCAA
AGAGGAGATTTCAATGCGAGAACTCCTGGAACAAGACCATCGTGGAAAAA
TCGACTCCTTACGAAAAGAAAATAACGAAATGAAACAAGTCGTCTCACAA
TATGAAAAAACTATCGTCGAACTAACAGAAAACTCGCATCACAATCACAT
GTATAACGAAGAAACTTTATCAGAATCAGTGCGAGCCAAAGAACAACTAC
AACAAGATTTGTCAAGTGCAGAAACAAATCTAGTGGACGCTTATAAACGT
ATCGAGAAATTAAAAATGGCTATTGACACTTATAAATCGAACGAGGACAA
TCTAAAAGCTTCGGTCAACGAATTCCAAATCAAATTGAGACGTTCAGAGG
AAAGATACCAAAAACTAAAGAGTCATGCAGCTGAAAAAGTTGAAGCTGCA
AATGTCGAGATCAACAAAGTACGAAAACAGAAAGAGATCGATCTTGCTGG
TCTACAAGCCGCTTTGAAGAAATCGCAAAGTCGTATCAACAGTTTAGAGC
AAGAAGTACAACAGAAGACTCGGGAAAATGCTGAGTTTGCACAAATTTGT
GATGACTTGATCAAGAAAGTATCTGGCGAATGATAAATCTTGTGTCTTAT
TTGTTGAAAAACGAAAACCTGGTTTAAAGGGTGGTTTGAAAGGCGGTCCT
GGGCGGATCGAAATAAACCCTGTAACAGTTCAAAAGAGCGGACGTCAGCT
GAAATTTATGATGACAACGTTAAAATCAGAACATTTGACTTGgaagtgaa
aaagaaaatttgtgaAAAGTTACGAAAAATCATTCACacgaagaaaaatt
taatttaatattttatctatttggttgtttccttttttctgtATTAACTC
agataatttttgtaaataaaaattagttTATATGACCAAATTTGCCTGAA
atgtttgtcttttttttctaaCCCATTCTCTGTCAACTACGAAAACGACG
ATAAAACGTATGAGGTCTAATTACCCCCCTCAAAAAAATCAGCATTATTC
CTCAAACACAATTGCTTATCctcaaaattctaaattttccaGAAGTAACC
GCAATTTTTCGACTCAACGATCAACGGTCA
Run BLAST on NCBI

transcript from alignment at scaffold_108:330821..343049+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046252 ID=TCONS_00046252|Name=TCONS_00046252|organism=Clytia hemisphaerica|type=transcript|length=12229bp|location=Sequence derived from alignment at scaffold_108:330821..343049+ (Clytia hemisphaerica)
gaatagacagggcaaaaatgggccgtctaaactagagcttagaaACATTG
CATTATACctgagaagtttgaaaaaaattgattggcTTTATAAGGAATCT
TACCAGCAACTTCGCCAGCTCTTTTAACATTGGTCGTTAATGAATTCGAG
ATCATTTTACATTTGTGTTCAGGATTGCGAGTCATAGTTTGTATCTAGAA
GAATTTAATATTCGCTTTTCTCATCATGGACCCACATTTAGCTCCCGAAC
ACTAACCTAGCTCGTAGAAGTCACGTTTCTATTTATGAAGCGAACATTAC
TGTGGCCGTAATTAGGTAGTGTTGTTTGTGGCTCAAAGTTTATTTTTACT
GTAGCATGATAATCAGATATATAAAGTTCATTACGGGTATTTTGTTTCTC
TTTTTATCATTGTATGATCCTCATTACTCCTCATTAGATGTACCAATATA
ATGACATAGAGAAGGAACCAATAGGAAAGCAGCAATTAAATGTAGCTTCT
TAACTTATTATGGAAAAAGAATCTGCTAGTAACAATGATGGACGTAAGCC
ATTGTTAAAAAGTCGGAAAAATACGGCCAGCAAGGACAGTGTGTCAAAAC
CATCAACCAATAAGGAACAACAACACGAACTACCGGCTGCTGAGCGTGGT
TGCTGTTGTTTTGATATTGTCAAATTTGCTTTTTGTGGTTTTGTATGTTG
CAAGAAAGCGTGTGGATTTCCGAAAAGCGGACCCGCAACTAAACCAAAAA
CTAGGTCAACACAGGACGTTAATgagaataaatttgaaaaagggaAAGAA
GAATTTGAGTTAAAGTCGCCTACTGAGAAGACTGAGTTGTTATCAGACGT
TGATCATCCCGTTGAGCAGAAGTGTGAAAAGAAGAAGCACTCCTGCGACG
ATCTTTTAAAACCGAATAAGAATCAACAAAGTCCAAAAGTCACTTCTAAA
CAAGAAGCaaaggaaaagaaagaagaagaaggaaaaagtaaagaaaattt
attgaaaaagaacAGTCTATCTACTGTCGACGACGACAGTCGTGTTGAGA
AAAATTCCGAACCACACAAAGAGATTGCTATCAGCTCTGACGAGGAAAGT
GATAAAATAAGTTCTTCGAAAAAAGAAGCTTCCCATCAAACAGATAGCCC
ACCAGACTCATCACGGAAATCTCCCGAAGGTAGCGAAAGGCGTGCATCGA
AAGTTTTTGACGCTGAAACTCAAGTGCCAACACCGAGAAAGGTTTTAGTT
AAAACTGAAAATACTAACCAGAATCAACAACAAGAGTCAAACAAAGGAGA
AATGGTAGCAACAGCCATTACGGGAGCAAATCATTTTTACACGCTCGTCT
CTGAGGTAAGCTCGCTACACATTGAATATTAAAATGGATCTTTCTTTGGG
TCTTCTTCTTTTACAGAAAAGGTGGACCAACCTGGTTTTGTCATGTTATG
TGTTTATAACTATAAGAGGCGTTTTGTGGATGGTTTCCTATTTTGTGGGG
TTTCATTTTCATAGCATAAACACTAAAGGCATCGCTAATCATCcaacttt
ttgtaaaaaagtttcGAGGATTTCTTCTAGTTGGAAATTCATGACATTTT
TGGTATATTATATTCCATTAAAAACAATATCAGATTCTTGCTCTTATACC
ACTCATTACAAAATCTTTCTTCAAAATTCGAGTTTTTCAAATAATCActt
ttccttaactcgaatacGAGCAATATAATCAAATCAGGAGCATTATAACG
TACTGTTACTACTTAGAGTGCACATGTtaattacacattttttcataaga
acatccaaaattttttaagcctttggatgttcttaactgttttagtttta
agcctaaacatgttcttattttcgccagttttttaccatttttacccatt
ttcctaagaaatcgggtgtttttgagtccttTAAGCCTTAGAATGtattt
aacttgttcttaacattttggctgtcgaaaccttatgttcttatatggtt
tgtacttataaaaaaaaaacgtgtaaccaaAATTGCATTATTTTATCATC
AACATCACATTGATGTTATATCCTAAACGAGTTACTTTGTTTCTATATAC
TACAATAGGCTTGTTGCTTTGTATTATCAAAATACTTTATGCATCCGTCC
CTTGGTAGTATTTCCTGATCCAATTTAGCATGAATATTGGACACTTTGAG
TTTTTTTATGACATCAGTTGATTGCAATCGATTTTCTTTCACTTCCCGTT
CTATATTGCTTATAACATCCTTGTCATGTTGATCAGTTTTAAAGATAAGA
AGGTGTGTTGTGCACTGTCTTATATCTTCATATCCTGATTTTATGAGATT
TTACCCTTGCTACTCAACTATTATCCGGGTGGCATGGGGGTACCTTTAAG
GAACCGATATTGATTAGAACTAAGTTTGGCTTCGTGACTTTCTAAAAttt
aatcttgattttttcttaccgttgactctcgctaattagAACTCGAACTC
GGACGGGAAAtcttattttttcgaattacagagaggtTTGAATAATAGAG
AGTAGTTTCTCTTGGAATAAGTTCCAATTATAGAATGATAGAGTAATAAA
GGTTTGAATTGGCAAGACTCTCATTTCActcatttttaggcaaaaaagaa
CCCTGTCTCGCTATTGTTCAcgccaaagttaaaaaaaaccgcTGCCTcct
caaaaaaaggttcttgtcaaatttagaaattttcaggatttctgctgctc
ttcaaaatttgttcttgccaaaattattttcctttaGGTAAAGAAGTTCC
TCGTCGGAGGAATGGTCTCTACAACTCCAATTCTCATTCACTGTTCATTC
GCTATTTCACTTTAAAGTTTGACAAACTCTCTTCACTGATTTATCTCCCT
AACTCGAATTAATTTGTGTTTCTCgtacgtgttcgagttatagagagtAC
ATTGtagctgaaaattattttccctGATGCGATGTAATTAAAACTGTTTC
GTCTGAGTTTTCAAACGAGTTACAGTTCAATAATCAATTAGGATTGTTTG
ACTTCTTGAGTTATCGTTTTGTTGTGCCAAATATTGTCCGCTCTTTGTAA
TATAAATGTGATGTTGATATACTCTTTGTAACAGTACATTTGAGAAGGTA
ATGactttaaaatccttaaaaccGTCATCCTTAGTAATTCATTTTTAATG
AGATGCATACATTCTGCCAACTAGCTCCAAAGATTGATCATTAAAATTCA
ATCATCTAGTTATAATGAGCCGTTTTAACGAGCTCATTAATCAACAGTTT
AAAATCAGTTTAATAACCAGATCTTCGCTATTTTTTCGGTTCTCTTGTTA
CTGTAGAAAGAACGAAGTTACAGTtcacgctctctaattcgacgttctac
tattcgatacgctccattactCGATAATACTGAAAGTTTCCgccaacaag
aaactctcataaacgataCTCTCTACCTTTTGATACGCTCCCTTGTTTGA
TGAAAActcaattccccttgaagatcgaattgtTGAGTGTTAACTGTTTA
tcttaaaaaaatcattgaaagagTTATTGTGAAAAAGATAGCCTGACCAT
CATTGCACCCGGTACCCCCTCCTAACTTTTCAATCCAACATTCTCACCCA
TGTAACACACCAGCAGCACTTTGATGCTGACAATTATGATAATCTCTAGA
GAGAAAGAAAGATGCTATAATCACAAAAAATCTGGGGTTAAGAAATCTAG
GTCTACGACTATTCAAAGGTTTGGCCGCATCTTTGAAGTTGAATTTTCAC
GAAGAAGTTGAAGTGTTTTGGTTTTTGACTTCAAAGTGGACAGTTTTGAG
GGACCGATGACTCGCTGTCTAATTAAATtgctagaaaatgttatattttg
gCTATCGCCTAAAGGGATTGGATTATTACTTCAAAGAAGTGCTATCACGA
ATGATTTAATAAGATCGAATTACCGAAGGAGTTTTTGCTTGAGTGGTGTA
AACATACCCGAGGGGGCATGTTACTTTAAAAGAACCAAACATTCCCGAGG
GGGCATGTtactttaaagatttaaaataacCAAACATTTCGGAGATTTGA
GGTTTGAATACCTGATGTCTACTGTAGCAATACCTGGTCTGAGTTTATTT
CTTAGCTAAGCTTGAAACATAACAACGTCGATTTGTTATGTTAGTTGGGA
AATAATAGATTTTGAAATCAGATTTCACCAAGCTCTTATGAAAGTCTTCT
TCAAATATAGCTCCTAGTCCGGACCGCCAtgttaaaaaaacgtttttcat
cAAAGTCAGTTAACATTTAATATTTGATGGTTTCTTAGTCTTCATAGAAA
TTGAGAGCAGATTTTAAGTTTagtttatttcgaaatttttgtaTTCAGGA
AATTCAGATAAATtgtcattgaaaatttttcattctgGACAAAGATTTTT
ACGTTTATTATTGCAGTAGATCGATTCGTTTGGCATTATTGCTAACCATT
CTCCACAacttctatttttctttggaatcACTGTAACCACTGTAACTTTT
GGACAAATATATCAAACATCAAACCAAAAGTGACCATTTGTCAGCTTGGT
TAAAATGGTTCAAACATCTATAAAGAAGTATCTTAACACCTTTTATTCTG
GTTGAATGTTAAAGCAGAAGACTGTTAAAAGCAAAAGGTTTTCTCTGTAC
TCTAGGCTTACTTACAAAACCGGTTCGTGTTTAAACCGGAGATTAATGTC
ACTAAATCTATTCATCAACACACATATCGTGTggattttgtttataaaaa
acaCAGTGACTTCATTCGTTAAAAAAGAATGAGGGGTGATTTATAAACGC
TCTAgtcattatcaaaattttaattccatCAATTCATTACACCGCTttaa
aaagttgagaaaattAGAGTGACAACTAATTTTATCAGCAAATCATTTGA
TAATTTTCTGTTCGTCATGTTTGTAAAATCGATAAGTCAAGGAAGGAAAT
ATATGTACAAAATTCTAACAACATATGATATATATTACATAAACTGTCAA
GTGTTGTTTCATATAGTGGGTTGTAGGTTTGATTTTTGTCCCATATGTAA
CGGCTTTATATTGAATGTTACTCTTCGCTGTCCTTTACAACAAGCTGAAC
TTTCTCAATATTGTTTTTCATGTCATTCTTCGTAGACTTATCGGAGCGTT
CttcacaatttttgaaacattGATTGCaaatttgtctctcttcttttAAT
CTTTGGTTAATTTTTGGGTCGTGAAGTGATACCAAGTCTATGTTTAGCAT
TGCTGAACGTATGTTCAATGCTGTTAATTTCGTCTTCATCTCTTGCAATT
CGCTTTGAAGTTTCTCTAATTGCTCGTCCATGCTTTCTTTATGCTTTTCT
GTCACAGTACTGCTGCTCATGTTTTTTGTTTCCCTCACCTAACCAAAATA
ACTTTGCACACCACttccaaaacaaaattctttgtatgttttgttttgtt
ttgaaaatgcaCTCACAAGAGAATTCTTTTTATGGTcgtaaaaacattcg
aacgcgTTCGAATTTTGAAATCGAATGCGTGACGTAACATAACATtccat
ttaaataaaaaaaagaatgtttacaaaaaaaattttgtatttgTTGTTGT
GAAATTTCGATTGGATCgcaattaatttttatttaaataacTTTAACCGC
ACGTAATAGCATAACTCATATTGATGGCTGGAGTAGCAATTTTAATCATA
AAGGTTTATGTGGCTTTTTGTGGATATGTTGACTATACTCTGAATGTTAT
AGAAAGTTCATGCAAAAGAGTTATGGGTCTTGGTTATTCAAATGAACAAC
AGCAAAATGGAATTCCTAACGAGGAAAAACCGCGTAATAAAAAGCAAAGC
GTGTCCAAGGAAGAAAAACCAGACTTTGGGAAGgagcaaaattctaaaaa
caaaagaagtcCAGACAAAAAGAAGAGATTCGATAAGAATAGAAATAGTA
TTGCTGTCAGCAATTTTATAGAGCAAGTTGAATCATCTACTCAAACTGAG
AACTTTACAGAACAAATTAAGGAAGCTATGAAATTGCTTGTGAAACAAAC
TCAGACAGATTCTATAGAATGTGAACTGAATACTTCGTTCACGCAAACAG
ACTGTCTTGTTGAAAATTTGGACTCTGAAATTGAGACAGAATCGCCGGTG
AAAATTGAGCTGaaactttcaacattttctCAACAAACGGACTTAGAAAC
GGTAAAATGAAAGACAATttttaatgttaatgtataATAGTGATCCGAAA
ACTGGGTGGattatttttcattcttctatAATTTCTTGGTGATGAAGTTT
CTTACAGAACCAAACATAAGATTGCTGCGGATAGAGGGCGAAATGAGGGA
CCGGGTCCTGTCATATCCCAGATCTAGctgatttttaaattgtccCTCTT
TTTCTTGTTTACAGCCTTTACTTTACACTCAAAGTGATTTGGACGAAGTC
ATCAAATCTCGCGAAGAGGAATGGCAAAAGAAATATCTAGAGATCGAAAG
CAAGGTAAATGTAGCTTTCATATTAACTTCTTCTTTTTCGAACACTAGTA
AAAAGTCACTCTTCCATTCGAATTTTACGAATGTTACGATGGACCTGAAA
GATCATGTTTTCAACTAAACACAATGTTTTCACCTAGGAAAAAGCTTGGt
tgaaaactctcaaaacaactGGGTGTTAAAAAACATCGTACTTAGTTGAG
AACATGACCCTTCAGGTCCATCGTAGGGTCTTCAATAAGGatggtacacg
ctttttttttcattttatgatggacattcttaatttttttggggaaaatc
atcctaaaatattcttagagcaTTCTTAagttagtatatgtaatcacatg
ataacgagtgcaattcgaatataattgcacgagtgatttttttgttatta
attttccttttcgtccgaaaggacgaggaaaattcgaaacaaaaaaatta
cgagctaatcgcacaatggctttcactactttttcccagttaggaaagta
aattacagaaattacactgagagtttaatatttttctcttctctctgtgt
ctttcttttattgttgtttattgattttctttctcaaaaaataaattcgA
ATGCAATCAAAACCTTCgatgtaaaaaaaatgtaagaaaaaacattaaaa
tcaattttgtaaacattgacGCAGTTtccctaactgggaaaaagtagtga
aagccattgtgcgattagctcgtaatcacataataactcgtacaattcga
aaattgcacacgtgatttttttgttttgaattttcctcgtcctttcggac
tcggaaaattaataacaaaaaaaatcactcgtgcaattatattcgaattg
cactcgttatcatgtgattacatatactaattcaaactagatttaaTACA
TACGTCTAAAGCATAAAATAGCATTTTTGTGAACGTAGTGAGCCTTGCTT
GGGAGTGATTAGTAACTTATAactgaaaatgctctaaaaatcgCATTCTT
ATTTTCCGTTGCcgaattccatgatggtgatattcttagcatattcttaa
ttgtttggccaatttcatcatgaatattcttataaagtatgttcttacaa
aaaaagcgtgtacgatAGATTAATTGAATTCTTTTGAGGGATCAACGGCA
TAATCAAATGGTAGAAAATGGAAAGCCCAAATCCTAGCTAGTAAACAGGA
AAATTTTTCCAGCTTTTAACAACTGGAATTTCACACTATCtaatagtgtg
gtcgtgttacaaaaatacaggctgtttgtaggaaaaaaataagatctagc
tgaaactttctccagaccttctctataggatgcttatacctcaggaaaaa
ttcccctaaaatcccactggtggaacatcccttttttgggcaatttccat
tttccccaggcaaaatcctaagggcaaaattttttgaaaatttcaaactt
atttccagacaatatcatgtataccactcgaaagctctcgaaaaactata
tagaagacttttaaacggttatagtCGATTTCCTtactaactcgagatat
ttcatgcgcaagttctacttttcgccacattttggtctaaattgaccata
aatagcatcttctgcgtgaattatcttgagttaggtaatgaaatcagcta
tacccgtttaaaagtcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcttgataatgtctgaaaat
aagtttgaaattttcaaaaaatttcgcccttagggttttgcctggggaaa
aaagaaatgtcccaaaaaagggatgttccatcagtgggattttaggggaa
tttttcctgaggcataaccatcctatagagaaggtctgaaCTATCACTCC
TAACTTCACACTACCTCTGAATTTTTATATAGATCAAAGAGGAGATTTCA
ATGCGAGAACTCCTGGAACAAGACCATCGTGGAAAAATCGACTCCTTACG
AAAAGAAAATAACGAAATGAAACAAGTCGTCTCACAATATGAAAAAACTA
TCGTCGAACTAACAGGTATAAAAACAATTACGTACCCTAAAAAGATTCTG
AACGAGTCAGGGGAATAACTtagaatttggaaaaattaaagcATACTAAG
GCCCTACTAAacatgccccccccccaatattttgcaaagtaaagaatttt
tttttactttaaaaaatcttatatatatcGTTTAGAGGagtgaaaagtcg
aaaattttcttcgtcgcccaaccatggtggggggcatatttttttggccc
cctcaattcgatttagcacgccgggggccatgcAAAGCAAACGGGAGATT
TAATCATTAATTAATTTATTGTACATTGTAGATATTTTTCAGTGTGGCTT
TTTGAAGCTGAAACTGGCGTTCTAACCTATTCCAAATAGACAAAAAAGGG
CTTGGGAAACGGCATTTTCATATTTAACACCAATCACGGCAACGTATTTT
AACACGCACAcacttctttcttttttgtagAAAACTCGCATCACAATCAC
ATGTATAACGAAGAAACTTTATCAGAATCAGTGCGAGCCAAAGAACAAGT
AAGACACTTTCATTTGCAAGATATGAGTTACACGCATTggacttactctc
gggtacctaatagccgcccccccccccccccgctaattaatttttcgaaa
attttccccccaggaaattcttattccaccccccccccccgcgcttatta
agttttgagagtTTTTCCAATTCCCCCGCTTATTCCGACcccccagctat
taggtacccgagagtaagttaTTACACAGGATCCAGGATCAATATATTCA
AATAACatattacagttgacgctcactaattcgaactcgaacggggaatc
ttatttttcgaattacagaaagtattttGAGAGGGTTTCTCCTTTGACGG
AAACTGGAGTCGAGCTCGAAGTTTAAATAAGCGGGAGTTTACTGTATTTA
AATAGAAAGGCTGAAAATATTATGTTAGCACGCATGATCTGATATGATAG
CGGTGTCGAAAAGAAGTTTTCTTTGCATTTGACCAAGAAGTTCACCCTCA
ATGGTCAATTTACCCAAGTCTTCTTCCTCTTCCCTTTTATGCAGCATCTC
TAAGGCTTGCCATAAAAGCACATTGTCTATATTTATCATCacaatgtttt
cttttgatcCTTTCAGCTACAACAAGATTTGTCAAGTGCAGAAACAAATC
TAGTGGACGCTTATAAACGTATCGAGAAATTAAAAATGGCTATTGACACT
TATAAATCGAACGAGGACAATCTAAAAGCTTCGGTCAACGAATTCCAAAT
CAAATTGAGACGTTCAGAGGAAAGATACCAAAAACTAAAGAGTCATGCAG
CTGAAAAAGTTGAAGCGTAAGTTGATTACAATAAATATTCCAATTAGCAA
ACATAGTGAATGAAATATGTCCAGTGTattttttgtgaatattttaaaag
tctcctttaattttgtagaaaaattgTGCCACCAGAGATAAATGCCGAta
aattatcttttcatttGCCACCTCTAAACACATCTCTTTTACAGTCCAAA
GAAACCTAACTGACTGTCAAGCATGACGCTCAGAATTGAACTGTATGATT
GCTCTCATTTTTCCAGTGCAAATGTCGAGATCAACAAAGTACGAAAACAG
AAAGAGATCGATCTTGCTGGTCTACAAGCCGCTTTGAAGAAATCGCAAAG
TCGTATCAACAGTTTAGAGCAAGAAGTACAACAGAAGGTAATTAGATATT
AACCCCTTGCTTTGTATCTCTTTTTTactcttgtgtgcttaattgtaggg
gggtggaataagcagggggtgggtactccagataaaaatcaacaaaatgg
ggGCTCATAATTAAGTGCTATTGacctgattttgctaaaaaatccctagg
aaaatgaagtgGCAAATTTTGGCACTTCGTAGCATAAaggtcataaaatg
gggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
CCGGGGGGGGgtgactttttcaaaaaattgcaaaatgatgTAGGGGgtac
aattaagcacacaagagAAATCATAGTCGTGGGTAATTCTCCTGATGATG
TATTTTGCGTAAAAAAAgctatttcttttattttggaGCCAAAGGTTGAC
TTGATGCATGTCATTTCTGGACTTAGATCCAGAAATCCATTATTCAATGA
CATCGTCTAACAAAGAGCACAAAAAGCTAGGAAAATGAATTGGTTTGAAT
GTGACTATACTGTGATGTTAGTTTAGATAAGGctgaaataatattttctt
ttgtccTCTTTTTTAGACTCGGGAAAATGCTGAGTTTGCACAAATTTGTG
ATGACTTGATCAAGAAAGTATCTGGCGAATGATAAATCTTGTGTCTTATT
TGTTGAAAAACGAAAACCTGGTTTAAAGGGTGGTTTGAAAGGCGGTCCTG
GGCGGATCGAAATAAACCCTGTAACAGTTCAAAAGAGCGGACGTCAGCTG
AAATTTATGATGACAACGTTAAAATCAGAACATTTGACTTGgaagtgaaa
aagaaaatttgtgaAAAGTTACGAAAAATCATTCACacgaagaaaaattt
aatttaatattttatctatttggttgtttccttttttctgtATTAACTCa
gataatttttgtaaataaaaattagttTATATGACCAAATTTGCCTGAAa
tgtttgtcttttttttctaaCCCATTCTCTGTCAACTACGAAAACGACGA
TAAAACGTATGAGGTCTAATTACCCCCCTCAAAAAAATCAGCATTATTCC
TCAAACACAATTGCTTATCctcaaaattctaaattttccaGAAGTAACCG
CAATTTTTCGACTCAACGATCAACGGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029540XLOC_029540Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046252-exon-scaffold_108-1491911889:330821..332175TCONS_00046252-exon-scaffold_108-1491911889:330821..332175Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1510915933:330821..332175TCONS_00046252-exon-scaffold_108-1510915933:330821..332175Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1575043694:330821..332175TCONS_00046252-exon-scaffold_108-1575043694:330821..332175Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1491911889:337285..337374TCONS_00046252-exon-scaffold_108-1491911889:337285..337374Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1510915933:337285..337374TCONS_00046252-exon-scaffold_108-1510915933:337285..337374Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1575043694:337285..337374TCONS_00046252-exon-scaffold_108-1575043694:337285..337374Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1491911889:339403..339535TCONS_00046252-exon-scaffold_108-1491911889:339403..339535Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1510915933:339403..339535TCONS_00046252-exon-scaffold_108-1510915933:339403..339535Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1575043694:339403..339535TCONS_00046252-exon-scaffold_108-1575043694:339403..339535Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1491911889:340001..340068TCONS_00046252-exon-scaffold_108-1491911889:340001..340068Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1510915933:340001..340068TCONS_00046252-exon-scaffold_108-1510915933:340001..340068Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1575043694:340001..340068TCONS_00046252-exon-scaffold_108-1575043694:340001..340068Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1491911889:340687..340886TCONS_00046252-exon-scaffold_108-1491911889:340687..340886Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1510915933:340687..340886TCONS_00046252-exon-scaffold_108-1510915933:340687..340886Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1575043694:340687..340886TCONS_00046252-exon-scaffold_108-1575043694:340687..340886Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1491911889:341137..341257TCONS_00046252-exon-scaffold_108-1491911889:341137..341257Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1510915933:341137..341257TCONS_00046252-exon-scaffold_108-1510915933:341137..341257Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1575043694:341137..341257TCONS_00046252-exon-scaffold_108-1575043694:341137..341257Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1491911889:342487..343049TCONS_00046252-exon-scaffold_108-1491911889:342487..343049Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1510915933:342487..343049TCONS_00046252-exon-scaffold_108-1510915933:342487..343049Clytia hemisphaericaexon
TCONS_00046252-exon-scaffold_108-1575043694:342487..343049TCONS_00046252-exon-scaffold_108-1575043694:342487..343049Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:330821..343049 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0873199	0.141721	0.691709	0.545386	1.58824	1.65939	40.6133	46.995	34.3243	26.8356	11.425	27.3312	21.9731	23.553	15.6527	22.4102	12.4483	12.9089	5.24828	5.44817	10.6954	9.01983	5.54092	7.03427	10.2084	12.5081	3.02284	1.37428	0.248628	0.285524
Blast
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BLAST of TCONS_00046252 vs. Swiss-Prot (Human)
Match: TACC1 (Transforming acidic coiled-coil-containing protein 1 OS=Homo sapiens GN=TACC1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.584e-30
Identity = 68/186 (36.56%), Postives = 117/186 (62.90%), Query Frame = 3 
Query: 1467 RELLEQDHRGKIDSLRKENNEMKQVVSQYEKTIVELTENSHHNHMYNEETLSESVRAKEQLQQDLSSAETNLVDAYKRIEKLKMAIDTYKSNEDNLKASVNEFQIKLRRSEERYQKLKSHAAEKVEAANVEINKVRKQKEIDLAGLQAALKKSQSRINSLEQEVQQKTRENAEFAQICDDLIKKVS 2024
            +E+   + + K +  R+E  EM+++V++YEKTI ++ E+     M ++++  +    KEQ   DL+S E +L D ++R E LK  ++ +K NE+ LK    ++  ++++ E+RYQ LK HA EK++ AN EI +VR + + + A L A L+K Q ++ SLE+ +QQK +E  E  +ICD+LI K+ 
Sbjct:  617 KEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLG 802
The following BLAST results are available for this feature:
BLAST of TCONS_00046252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TACC12.584e-3036.56Transforming acidic coiled-coil-containing protein... [more]
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