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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046241 ID=TCONS_00046241|Name=TCONS_00046241|organism=Clytia hemisphaerica|type=transcript|length=335bp
CTTCATGACATAATGATGCATATATTATTATTTATTCGcttaaatattaa
aataataaaGTATAAAAATATAGGAATGGATCTTGTCAGCCTTTCAAATT
GCTAGGGTGTCTaataaagttatttttcaaaatcccgAATTGATGCAGTT
TTCTTTgccattttgttatttttctgttCTATTTCTATAAGTttcaacta
aaatttgaaatcagaaataaaaatttcgaggttaaaatgttttaaacagA
AAGGAAACTCGATTTTCCAATTTAAAAAGGCCATAAGGACAAcactgCCA
TAAGGACAAcactgtgtcacagacccggtggagtC Run BLAST on NCBI transcript from alignment at scaffold_108:191938..193962+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046241 ID=TCONS_00046241|Name=TCONS_00046241|organism=Clytia hemisphaerica|type=transcript|length=2025bp|location=Sequence derived from alignment at scaffold_108:191938..193962+ (Clytia hemisphaerica)
CTTCATGACATAATGATGCATATATTATTATTTATTCGcttaaatattaa
aataataaaGTATAAAAATATAGGAATGGATCTTGTCAGCCTTTCAAATT
GCTAGGGTGTCTaataaagttatttttcaaaatcccgAATTGATGCAGTT
TTCTTTgccattttgttatttttctgttCTATTTCTATAAGTttcaacta
aaatttgaaatcagaaataaaaatttcgaggttaaaatgttttaaacagA
AAGGAAACTCGATTTTCCAATTTAAAAAGGCCATAAGGACAAcactgtgt
cacagacccggtggagtCCCAACTCGCTGGAATTGtgggcttggaacaat
agaatttttatccccttcGAGATTTTGACAGAAATCCTACAGGCGGGAGG
AAAAAATCCACGgaagctgtgagacaggggcgtATAAGGCGATAGTTCGA
CAGGCGCCGCTTTTATAAAGATGACAGGAAACAATATTTCTATTGACTGT
ACAAATAAATAGCAGTCATGACTAAAACAGTTCCCAAAACAAATTGAATG
CTCAGTATGAAATTGAACAAATAAATTGAAACAATACAGGAGACAATTAT
CGCAAAGGATGTAGCAAAACCCTTCAGAATGTTGTCTGCATACTTGACAA
CGACTGCTACTAACAAGCCACCAAAAGCTTGCATTAAGATGATAATCCAA
ACCAATAAAGTGTATCCAAAGAAAACACCTTTCTCTTGGNTTGTCATCTT
Gaaaatagttcttataatttcaattaatcgaaaaactattgtttccacaa
aatacccctaaaatatgtccaaaataaGTTCAGGTGTTCTAATGgataca
gattcaaagatatctaacaacaacaaaactttttgtgaaggaaaataaga
gaaaaatttcaaaaactatctaccaataataaactgagcatcttgatgtt
cttataaagctcggagacagagatggaacagcaataactgaaaagacaac
gcggtacatattccagccgcggctttcttatactatgtacCTATCTATTA
ACCAAATTCcattttaaaattaattcaaaatatttattaacaATACGTAT
AATGGCCTGTTAAAACTCGGAGACATGGGCTACGTAATATTTATCACACG
GTACAGAGTACAATATGGTATATATTTTTCTCGTTCAGAGTTTTCTATAT
CTTCCTCGCCTTATATCCACTACTGTACGAGTGAAAGTGTGATAACTGGT
TTATCATCGACTTGAAAAATATATCAACAAACAACTTTCTCTCGTTTGTC
TTCTCTATGCTTTTAGATTCTGTTTCGAATGCTCATATCATGGAAATGTC
AAAACACTCTTATTTTGACCATTTTTGAGAGGAAAACGAAAACATTTCTG
GGAATAAATTTCGGTAAAAGATACAACAAGTTCAAAATACGATATCTCGC
TTACCAGACCCCTTTTATAAACGCAGTCTTGTATTTGCAGGgcacaatat
gaaatacagcatttatgccAATTTTCAGACTGCTTATATTTTTCATGTCG
ATGATAATTAGTATTATTCTAATTACAAGAAAATGtaactattttcaaaa
tatcttaaGCATCAAATCAAAAATGGGCCCCGAACGAATAAATTGGTTAA
AAAACCTGAAAACGTTCGGCTAAAATTACAAACACCACCTTAAAGATAAT
ATCTATTCTTCATGACATAATGATGCATATATTATTATTTATTCGcttaa
atattaaaataataaaGTATAAAAATATAGGAATGGATCTTGTCAGCCTT
TCAAATTGCTAGGGTGTCTaataaagttatttttcaaaatcccgAATTGA
TGCAGTTTTCTTTgccattttgttatttttctgttCTATTTCTATAAGTt
tcaactaaaatttgaaatcggaaataaaaatttcgaggttaaaatgtttt
aaacagAAAGGAGActcgatttttcaatttaaaaaggCCATAAGGACAAc
actgtgtcacagacccggtggagtC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046241-exon-scaffold_108-1491911889:191938..192233 | TCONS_00046241-exon-scaffold_108-1491911889:191938..192233 | Clytia hemisphaerica | exon |
| TCONS_00046241-exon-scaffold_108-1510915933:191938..192233 | TCONS_00046241-exon-scaffold_108-1510915933:191938..192233 | Clytia hemisphaerica | exon |
| TCONS_00046241-exon-scaffold_108-1575043694:191938..192233 | TCONS_00046241-exon-scaffold_108-1575043694:191938..192233 | Clytia hemisphaerica | exon |
| TCONS_00046241-exon-scaffold_108-1491911889:193924..193962 | TCONS_00046241-exon-scaffold_108-1491911889:193924..193962 | Clytia hemisphaerica | exon |
| TCONS_00046241-exon-scaffold_108-1510915933:193924..193962 | TCONS_00046241-exon-scaffold_108-1510915933:193924..193962 | Clytia hemisphaerica | exon |
| TCONS_00046241-exon-scaffold_108-1575043694:193924..193962 | TCONS_00046241-exon-scaffold_108-1575043694:193924..193962 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_108 | supercontig | scaffold_108:191938..193962 + |
Blast
The following BLAST results are available for this feature:
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