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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046129 ID=TCONS_00046129|Name=TCONS_00046129|organism=Clytia hemisphaerica|type=transcript|length=3199bpRun BLAST on NCBI protein sequence of TCONS_00046129-protein >TCONS_00046129-protein ID=TCONS_00046129-protein|Name=TCONS_00046129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=975bp MSTSNQESPSSSPPSKRAKISHHQNGAASKHEQIEAMETETNGTSHEIDERun BLAST on NCBI transcript from alignment at scaffold_106:77263..105797+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046129 ID=TCONS_00046129|Name=TCONS_00046129|organism=Clytia hemisphaerica|type=transcript|length=28535bp|location=Sequence derived from alignment at scaffold_106:77263..105797+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_106:77263..105797+ >TCONS_00046129 ID=TCONS_00046129|Name=TCONS_00046129|organism=Clytia hemisphaerica|type=CDS|length=76050bp|location=Sequence derived from alignment at scaffold_106:77263..105797+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046129 vs. Swiss-Prot (Human)
Match: UBA1 (Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens GN=UBA1 PE=1 SV=3) HSP 1 Score: 1274.23 bits (3296), Expect = 0.000e+0 Identity = 598/939 (63.68%), Postives = 741/939 (78.91%), Query Frame = 1
Query: 397 NGTSHEIDEGLYSRQLYVLGHEAMKKMGLSNVFISGMKGLGVEVAKNIILAGVKSVTIHDPEQCSIEDLSSQYYLSEKDIGKNRAQVSVENLSELNTYVPVTVHEGELTDDFLTKFQVVVLTNSSLDEQLRISDLTHKNNQKLIVVDTKGLFGQLFCDFGEKFAVMDTNGEQPISNMIASVTKDKESIVTCLDETRHGLEDGDHVTFTEVQGMTELNGCEPRKIKVLGPYTFSIGDTSGLSDYVRGGIVSQVKVPKVVEFKSFRDSLAEPEQLITDFAKFERPSQLHLGFQALHEYKKVTGLLPRPKNKVDGDKFMDIAKDLNSKAQSKVDE--LDEKLLRELASQATGDVCPMQAVMGSMAAQETMKACSGKFMPVMQWMYFDSLESLKVEDRNENSEN--YQPQNSRYDAQIAVFGRDFQKKLNSSKYFVVGSGAIGCEMLKNFAMVGLGASPEGKVYVTDMDLIEKSNLNRQFLFRPHDVQQMKSSVAAKAVKVMNPDMNIVAHQNRVGTETEKIYNDDFFESLDGVANALDNIDARIYMDRRCVFYKKPLLESGTLGTKGNVQVVLPEVTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDSFEGLFTQGPETTTQYINDPKFMERTLKLQGVQLLETLETVDKA-INKRAKTFDDCVAMARILFQEYYHNTIAQLLFNFPPDQMTESGAPFWSGPKRCPKIIIFDTSNDLHMDFIVSAANLFAFNVGVEGTRDRNVVKKSLESVEVPVFVPKSGVKISVTEQEAQNNAADLDDQKVETLKTTLPDPETLKDLKYFPADFEKDDDSNFHMDFIVACSNLRATNYEIAPADRHKSKLVAGKIIPAIATTTSLVTGLVCLELYKIINGNKSIENYKNGFINLALPFFGFSEPMPAPKMKYNDTEFTLWDSFEIQGKQEDGSEMTLKQLKDLFE 3198
NG+ +IDEGLYSRQLYVLGHEAMK++ S+V +SG++GLGVE+AKNIIL GVK+VT+HD DLSSQ+YL E+DIGKNRA+VS L+ELN+YVPVT + G L +DFL+ FQVVVLTN+ L++QLR+ + H KL+V DT+GLFGQLFCDFGE+ + D+NGEQP+S M++ VTKD +VTCLDE RHG E GD V+F+EVQGM ELNG +P +IKVLGPYTFSI DTS SDY+RGGIVSQVKVPK + FKS SLAEP+ ++TDFAKF RP+QLH+GFQALH++ G PRP+N+ D + + +A+ +N++A V + LDE L+R+LA A GD+ P+ A +G +AAQE MKACSGKFMP+MQW+YFD+LE L ED+ +E+ Q QN RYD Q+AVFG D Q+KL KYF+VG+GAIGCE+LKNFAM+GLG G++ VTDMD IEKSNLNRQFLFRP DV ++KS AA AV+ MNP + + +HQNRVG +TE+IY+DDFF++LDGVANALDN+DAR+YMDRRCV+Y+KPLLESGTLGTKGNVQVV+P +TESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARD FEGLF Q E QY+ DPKF+ERTL+L G Q LE LE V ++ + +R +T+ DCV A + Y N I QLL NFPPDQ+T SGAPFWSGPKRCP + FD +N LH+D++++AANLFA G+ G++DR V L+SV+VP F PKSGVKI V++QE Q+ A +DD ++E LK TLP P+ L K +P DFEKDDDSNFHMDFIVA SNLRA NY+I ADRHKSKL+AGKIIPAIATTT+ V GLVCLELYK++ G++ +++YKNGF+NLALPFFGFSEP+ AP+ +Y + E+TLWD FE+QG Q +G EMTLKQ D F+
Sbjct: 44 NGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVPVTAYTGPLVEDFLSGFQVVVLTNTPLEDQLRVGEFCHNRGIKLVVADTRGLFGQLFCDFGEEMILTDSNGEQPLSAMVSMVTKDNPGVVTCLDEARHGFESGDFVSFSEVQGMVELNGNQPMEIKVLGPYTFSICDTSNFSDYIRGGIVSQVKVPKKISFKSLVASLAEPDFVVTDFAKFSRPAQLHIGFQALHQFCAQHGRPPRPRNEEDAAELVALAQAVNARALPAVQQNNLDEDLIRKLAYVAAGDLAPINAFIGGLAAQEVMKACSGKFMPIMQWLYFDALECLP-EDKEVLTEDKCLQRQN-RYDGQVAVFGSDLQEKLGKQKYFLVGAGAIGCELLKNFAMIGLGCGEGGEIIVTDMDTIEKSNLNRQFLFRPWDVTKLKSDTAAAAVRQMNPHIRVTSHQNRVGPDTERIYDDDFFQNLDGVANALDNVDARMYMDRRCVYYRKPLLESGTLGTKGNVQVVIPFLTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDPKFVERTLRLAGTQPLEVLEAVQRSLVLQRPQTWADCVTWACHHWHTQYSNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNPLHLDYVMAAANLFAQTYGLTGSQDRAAVATFLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDSRLEELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDIPSADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHRQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLDYFK 980 The following BLAST results are available for this feature:
BLAST of TCONS_00046129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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