TCONS_00046125 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046125
Unique NameTCONS_00046125
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046125 ID=TCONS_00046125|Name=TCONS_00046125|organism=Clytia hemisphaerica|type=transcript|length=610bp
GTACCAGCCAGTGCAACCATTGTTGGAAATGTGGACAGGAGGGTCATCAA
TCAAAATCCTGTCAACAACAGCCAAAAGGGCAGGGGCTGGGGAGGTGAGA
TGCTCGTCAGCCCATCAAGTAGAACAATCTCCTAAACTACAATGCTGTGG
TTGTGGAAAGCAATCACCTGTGATGAAAAGATGTTCCCGTTGTCAAGCAG
TGCAATACTGTAACGAATCGTGTCAACAGAAACATTTTGCTGATCACAAG
GTACTTTGTAAAGCTATTAAAGCGATGGAAGATCGTAATGTCCAAAATAT
CGATAAGAGCTGTACTTTTCAAAGCCACCTTACACCAAAACAGAAAGTGA
AACTGGTAAATTTGGTCGGAGAAAAATGTGAAGTTGAGTGTTCGATTGGA
GGACAAATAGTTACCGCATTGTGGGATACCGGAGCACAAGTTAGCTTGAT
CGACCAATACTGGCTTGATACCAACAAAATCAAGTACGAACTTAAAAACT
TATCTGAACTTATGAATCTAGAGATCAAAACAGCTGACGGAAAGTTATTA
CCATACGTTGGCTATACCACTGTAAATACGCATATAGGAAATGAACTTAT
TGAAATCCNN
Run BLAST on NCBI

protein sequence of TCONS_00046125-protein

>TCONS_00046125-protein ID=TCONS_00046125-protein|Name=TCONS_00046125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
YQPVQPLLEMWTGGSSIKILSTTAKRAGAGEVRCSSAHQVEQSPKLQCCG
CGKQSPVMKRCSRCQAVQYCNESCQQKHFADHKVLCKAIKAMEDRNVQNI
DKSCTFQSHLTPKQKVKLVNLVGEKCEVECSIGGQIVTALWDTGAQVSLI
DQYWLDTNKIKYELKNLSELMNLEIKTADGKLLPYVGYTTVNTHIGNELI
EIX
Run BLAST on NCBI

transcript from alignment at scaffold_105:804189..804798

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046125 ID=TCONS_00046125|Name=TCONS_00046125|organism=Clytia hemisphaerica|type=transcript|length=610bp|location=Sequence derived from alignment at scaffold_105:804189..804798 (Clytia hemisphaerica)
NNGGATTTCAATAAGTTCATTTCCTATATGCGTATTTACAGTGGTATAGC
CAACGTATGGTAATAACTTTCCGTCAGCTGTTTTGATCTCTAGATTCATA
AGTTCAGATAAGTTTTTAAGTTCGTACTTGATTTTGTTGGTATCAAGCCA
GTATTGGTCGATCAAGCTAACTTGTGCTCCGGTATCCCACAATGCGGTAA
CTATTTGTCCTCCAATCGAACACTCAACTTCACATTTTTCTCCGACCAAA
TTTACCAGTTTCACTTTCTGTTTTGGTGTAAGGTGGCTTTGAAAAGTACA
GCTCTTATCGATATTTTGGACATTACGATCTTCCATCGCTTTAATAGCTT
TACAAAGTACCTTGTGATCAGCAAAATGTTTCTGTTGACACGATTCGTTA
CAGTATTGCACTGCTTGACAACGGGAACATCTTTTCATCACAGGTGATTG
CTTTCCACAACCACAGCATTGTAGTTTAGGAGATTGTTCTACTTGATGGG
CTGACGAGCATCTCACCTCCCCAGCCCCTGCCCTTTTGGCTGTTGTTGAC
AGGATTTTGATTGATGACCCTCCTGTCCACATTTCCAACAATGGTTGCAC
TGGCTGGTAC

Coding sequence (CDS) from alignment at scaffold_105:804189..804798

>TCONS_00046125 ID=TCONS_00046125|Name=TCONS_00046125|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at scaffold_105:804189..804798 (Clytia hemisphaerica)
NNGGATTTCAATAAGTTCATTTCCTATATGCGTATTTACAGTGGTATAGC
CAACGTATGGTAATAACTTTCCGTCAGCTGTTTTGATCTCTAGATTCATA
AGTTCAGATAAGTTTTTAAGTTCGTACTTGATTTTGTTGGTATCAAGCCA
GTATTGGTCGATCAAGCTAACTTGTGCTCCGGTATCCCACAATGCGGTAA
CTATTTGTCCTCCAATCGAACACTCAACTTCACATTTTTCTCCGACCAAA
TTTACCAGTTTCACTTTCTGTTTTGGTGTAAGGTGGCTTTGAAAAGTACA
GCTCTTATCGATATTTTGGACATTACGATCTTCCATCGCTTTAATAGCTT
TACAAAGTACCTTGTGATCAGCAAAATGTTTCTGTTGACACGATTCGTTA
CAGTATTGCACTGCTTGACAACGGGAACATCTTTTCATCACAGGTGATTG
CTTTCCACAACCACAGCATTGTAGTTTAGGAGATTGTTCTACTTGATGGG
CTGACGAGCATCTCACCTCCCCAGCCCCTGCCCTTTTGGCTGTTGTTGAC
AGGATTTTGATTGATGACCCTCCTGTCCACATTTCCAACAATGGTTGCAC
TGGCTGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029469XLOC_029469Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046125-exon-scaffold_105-1491911889:804189..804798TCONS_00046125-exon-scaffold_105-1491911889:804189..804798Clytia hemisphaericaexon
TCONS_00046125-exon-scaffold_105-1510915933:804189..804798TCONS_00046125-exon-scaffold_105-1510915933:804189..804798Clytia hemisphaericaexon
TCONS_00046125-exon-scaffold_105-1575043694:804189..804798TCONS_00046125-exon-scaffold_105-1575043694:804189..804798Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046125-proteinTCONS_00046125-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:804189..804798 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.166028	0.308874	0.750156	0.308554	0.795763	0.408829	0.420584	0.625016	0.215062	0.591672	0.702304	0.296625	0.345104	0.170858	0.225058	0.359607	0.143956	0.132481	0.134158	0	0.513826	0.210607	0	0.374953	0.570827	0.46535	0.486211	0.777388	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
IPR002893Znf_MYND
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046125 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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