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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046018 ID=TCONS_00046018|Name=TCONS_00046018|organism=Clytia hemisphaerica|type=transcript|length=1462bp
TTCAACTATCACCAGGAGAGAAGATAGAGGACACGTTTCCAGCCAGAAGT
TGCCACTTTACATtgtttttgatcagtttgatccaGATCGGCGAATCGTA
CAGCGTTATCAAAAGCAGCTATTATGCTGTCAAACACTTCCACAACATCA
GTGCTAAACCTGATCCCACCAATTCGACGCTCGCCGGCTATCTGTTGGAA
GCAGCACAGAGGTTATGTCATCGTCCGACGGTAAAGAAACAGCCAATTAA
GTCCGAGCACATCCACAAAATTTACGAAATCATCATCAAAGATGGTCTTT
CACTCCTAGATTTTCGCAACTTTACAATCATAATCCTTTCCTACACTGGA
TTTCTCAGGTATGATGAGGTATCGAATTTAATGCTTGGGGACATAATTTT
GTTTGACACCCACATGAAGATTTTCATTAAGCATTCAAAAACGGACCAGT
ACCGGGAGGGTGCCTGGGTCTATATCGCTAGCCTGGATTCTCCGGTTTGC
CCGGTGAAGACTCTTAAACGCTACCTGGAACTCGCTGGTATTTCATGTAT
TAATGAATTCTGGTTTCGTGCAATGACATTCTTCAAGAAAGCTAATGTCC
ATAAAATCAGAGCAAAGAACGTTGCTATCTGCTATTCAACTGCCAGATCT
GCCGTTATGGCATACCTGTCTAGGATAGGTTTGGATGAAAAACTATTTGG
CTTACACAGTTTGCGCAGAGGTGGAGCTACAACAGCTGCCAACCGAGGTG
TCAACGATAGAATCTTCCAAAGAAAAGCATGGCAGATGGAAAACGACTGG
GGTTAAGAATGGCTATGTCGATGAAGATTTAGATAGTCTTTTACAAGTTT
CACTAGGGCTTGGCCTGTGAAGACCTTTATTTGACCTCAACCGATCTGTG
ACGTTTTACAGAGGCTTTTCTAGACGACTTCTACTAAAGTATAACTGGAT
AAGAAGAAGaagtaaaataataaataaagaaattttcgattgagtttacg
aattagaaaataaatgaatttattttttgttcgtTCGGCGCTTCTTAGTC
ACGTGATACGATGTATAAGGGCGGTAGGATTTTGAGAATATTCACACGTC
GAAAGATGAGCTTAGACTCTCTCCCACCCACCCTTACATATTTCTATTTT
ACGGTTATTATAACATAGTGGTTGTTACTGATTATTTTACGGTTATTGTG
TACCGAGTACTACTTTGTACGATTTTTATAACATAGTCGTTGTTATTAAT
TATTTACTTACAAATGAGATTTGTAACTTATTATGCCGCACTATATAGGC
TTTTCTAGACGACTTCTACTAAAGTATAAGTGGATAAGAAGAAGaagtaa
aataataaataaagttattttcgaTTGAGTTTACGAATTAGAAAATAaca
taattacgcatgaattaacatattttatgcacggatcgcgaatcgtgcat
cgtaaatcgtta Run BLAST on NCBI transcript from alignment at scaffold_105:828017..829478+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046018 ID=TCONS_00046018|Name=TCONS_00046018|organism=Clytia hemisphaerica|type=transcript|length=1462bp|location=Sequence derived from alignment at scaffold_105:828017..829478+ (Clytia hemisphaerica)
TTCAACTATCACCAGGAGAGAAGATAGAGGACACGTTTCCAGCCAGAAGT
TGCCACTTTACATtgtttttgatcagtttgatccaGATCGGCGAATCGTA
CAGCGTTATCAAAAGCAGCTATTATGCTGTCAAACACTTCCACAACATCA
GTGCTAAACCTGATCCCACCAATTCGACGCTCGCCGGCTATCTGTTGGAA
GCAGCACAGAGGTTATGTCATCGTCCGACGGTAAAGAAACAGCCAATTAA
GTCCGAGCACATCCACAAAATTTACGAAATCATCATCAAAGATGGTCTTT
CACTCCTAGATTTTCGCAACTTTACAATCATAATCCTTTCCTACACTGGA
TTTCTCAGGTATGATGAGGTATCGAATTTAATGCTTGGGGACATAATTTT
GTTTGACACCCACATGAAGATTTTCATTAAGCATTCAAAAACGGACCAGT
ACCGGGAGGGTGCCTGGGTCTATATCGCTAGCCTGGATTCTCCGGTTTGC
CCGGTGAAGACTCTTAAACGCTACCTGGAACTCGCTGGTATTTCATGTAT
TAATGAATTCTGGTTTCGTGCAATGACATTCTTCAAGAAAGCTAATGTCC
ATAAAATCAGAGCAAAGAACGTTGCTATCTGCTATTCAACTGCCAGATCT
GCCGTTATGGCATACCTGTCTAGGATAGGTTTGGATGAAAAACTATTTGG
CTTACACAGTTTGCGCAGAGGTGGAGCTACAACAGCTGCCAACCGAGGTG
TCAACGATAGAATCTTCCAAAGAAAAGCATGGCAGATGGAAAACGACTGG
GGTTAAGAATGGCTATGTCGATGAAGATTTAGATAGTCTTTTACAAGTTT
CACTAGGGCTTGGCCTGTGAAGACCTTTATTTGACCTCAACCGATCTGTG
ACGTTTTACAGAGGCTTTTCTAGACGACTTCTACTAAAGTATAACTGGAT
AAGAAGAAGaagtaaaataataaataaagaaattttcgattgagtttacg
aattagaaaataaatgaatttattttttgttcgtTCGGCGCTTCTTAGTC
ACGTGATACGATGTATAAGGGCGGTAGGATTTTGAGAATATTCACACGTC
GAAAGATGAGCTTAGACTCTCTCCCACCCACCCTTACATATTTCTATTTT
ACGGTTATTATAACATAGTGGTTGTTACTGATTATTTTACGGTTATTGTG
TACCGAGTACTACTTTGTACGATTTTTATAACATAGTCGTTGTTATTAAT
TATTTACTTACAAATGAGATTTGTAACTTATTATGCCGCACTATATAGGC
TTTTCTAGACGACTTCTACTAAAGTATAAGTGGATAAGAAGAAGaagtaa
aataataaataaagttattttcgaTTGAGTTTACGAATTAGAAAATAaca
taattacgcatgaattaacatattttatgcacggatcgcgaatcgtgcat
cgtaaatcgtta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046018-exon-scaffold_105-1491911889:828017..829478 | TCONS_00046018-exon-scaffold_105-1491911889:828017..829478 | Clytia hemisphaerica | exon |
| TCONS_00046018-exon-scaffold_105-1510915933:828017..829478 | TCONS_00046018-exon-scaffold_105-1510915933:828017..829478 | Clytia hemisphaerica | exon |
| TCONS_00046018-exon-scaffold_105-1575043694:828017..829478 | TCONS_00046018-exon-scaffold_105-1575043694:828017..829478 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:828017..829478 + |
Blast
The following BLAST results are available for this feature:
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