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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046012 ID=TCONS_00046012|Name=TCONS_00046012|organism=Clytia hemisphaerica|type=transcript|length=2691bp
TCAAAGGTTGCTGTGTAGTTGCAAGGGGTTTTTAATTCGTTCACCAGAGC
AACTGACAGATTGGTAGTGACATTTCATTGCGGTTGACTTGACACTTTTT
GTCTCATTGAGAATCTCCGTCTTCTtgacatcatcatcatcatcatcatt
aataATGGCTTCGTCCTCTTTCTCAACAAACGCTGCAGTCGCTGCACGTC
TCAAAAGTGAAGCCGTCCTCGATCGGAACACACTCGATTACGCGACTGCA
GCATCGGTGGCTGGTAAATATCGGCCCGATAATGATGATTATCGGGGATT
ATCGAGGACAAACCCGAACGGTGATTTTCGATCGGAGCCTGATTTTAGGA
CGTCGCAAACCCCTTATCCTGGTGATTACCGAATGAGGGATGATTTTCGT
TCTTCCGATCTCAACGTAGGGAAGGATGCTGATTTTTCGGCCAATCGAGG
TCCCGTACCGGTGGGTTCGGGGCCGAGTGCCGGCGGGTACCCAGCTCATT
TTTGGAATTACGGAGCTAGTGGGAAGAGGGTCAGCAGTTTTCCATATGGT
GCAGGAGGGACTGGTAATGAGTCGATGTACTCTCAACAATCCAATCTTCA
CACGTACATGGACAGCCATGGAAATGCTTCACAAAACCAAATGTTCCAGT
CATACTCCGCCCAAGGTGGTCATCCAGGCTCGATGGGGTTAGGCGTCAGT
CCACAGGCTATTGGTGTGGCTCAACAAGCACAATACTTGCAACCAGGACA
AGCAGCAAGCCAACGTGTTCCCATCTCCCACACAACACGTGCCTCGCCTA
TCACTGTGCAATGGTTACTGGAGAATTATGAAACATCTGACGGCGTAAGT
TTACCACGAAGCACCCTCTACCATCACTATCTCCGTCATTGCGCCGAAAA
CAAAATCGACGCCGTCAACGCAGCAAGTTTCGGGAAACTCATTCGCTCCG
TTTTCGTGGGATTGAAAACCAGACGTCTTGGTACAAGAGGAAATTCCAAA
TACCATTATTATGGCATTCGTGTCAAACCCAACTCACCCTTGGCTCGCAT
CACCGATGATACCCATGTTGCATTGCGCGCAACCCCTACAAGCTCCAAAC
GCTCCATGGGCTCTAATAATTATGATGAAGAAAGGCGGACTGAGGGTGCC
GCCAGCAATGCGGAGGATTCAAGCGCCCTTTCCGCCCATCAACAATATTT
GGGAGATGTTGGGGATGGTTTGCCAGAGGGTCCTGTCATCGATCTCACAG
AACCCCTTCCTGAAGGactgaaaaaagaagacgttatcACGTTTGGAAAT
TATTACCGCAGCCATAGTGAGGCTTTGTTGGAAGTGATCAGCACTTTACA
GTTCGATTTGGTGGAAGCTCTTTGGCAATCCTTTTATAAGAGTCCGGCAG
CCGCCAACAAAGCTGACAACGGAACTTTGGATAACAACGAGTTCAATATC
ACTAAGAATGACCTCATCACTTTCTGTAACTACAAACCTGTCCAAGTTTT
CATCAAAGAGACCGATTACATTTTGTATCAGAAACTTGTCGGTGTTTTGG
TTCCGGATGTTTTGAGAGCTGTGCCAAGTGCGTTGACGCAAATCGTTCGT
AATTTTGCAAAGAGTCTGGAGAATTGGTTGGTTGGAAGTATGTCGGAAAT
GCCAAAAGAAATCTGCAATGTTAAAGTTGCAGCTGTTAGTGCTTTTTCCC
AAACTCTTCGACGATACACATCGCTCAACCATCTCGCGCAAGCCGCGCGG
GCGGTCTTACAGAACTCGCAGCAAATCAACCAGATGTGGAACGATCTGAA
CAAAGTAGACTTCAACAACGTTCAAGAACAATCGTCATGGGTTTGCCAAT
GCGATGAATCTCTCATCGCCAAACTCGAACAAGACTTCAAACAAACTCTT
GCTCAACAGCATTCACTGGAGCAATGGGCCAAATGGTTGGAGTCGGTGGT
TGCCATGGTATTGGAACCTCACCAGGGACAAGAGTCGTACCCAAAAGCCG
CTCGTAACTTCTTATTAAACTGGTCTTTCTATTCTTCAATGATCATTCGC
GATTTGACGCTACGTTCGGCGGCGTCTTTCGGTTCGTTCCATTTGATTCG
TTTGTTGTATGATGAATACATGTTTTATTTGATCGAACACAAAGTGGCCG
CCCATACTGGCAAGTCGCCTATGTCCGTCATGGCAGAGTGTGTCGGtgga
atgacgtcatcaagtaaCGGTAACCAAGGCAACGATGATGAGGACGAATT
GGACGAAAATTCGAACGACGGTTTGTCGGCACTGACGAGTGGAGACGTCT
TGAAGACTGGTGCCAATCTCACGATGTCACAAATTAACGAAGGCATGGAG
CCAGTTGCTAAGAAACTAAAACCTGATCATTTGGGTTGAACTATTActtt
atattttataattttatttttttggtaaaatttgaaacaattttaaaaag
atgtagAAGCATTGTACATattatatttagatttttttcctttgatgaca
atttttttttttggtttgttcTTTGTCATCAattattatcattatcattt
gtacaaaattttccttttatcTTGATCAATTTAGATTTGTTTAAAATGTT
ATTTGTGAAAattattgacaatttttttgaatagaAATTTTACGTCAATC
ATATTATTTGGGTAAAGACATTTTTCAGAATAAGACAAAAT Run BLAST on NCBI transcript from alignment at scaffold_105:631128..645750+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046012 ID=TCONS_00046012|Name=TCONS_00046012|organism=Clytia hemisphaerica|type=transcript|length=14623bp|location=Sequence derived from alignment at scaffold_105:631128..645750+ (Clytia hemisphaerica)
TCAAAGGTTGCTGTGTAGTTGCAAGGGGTTTTTAATTCGTTCACCAGAGC
AACTGACAGATTGGTAGTGACATTTCATTGCGGTTGACTTGACACTTTTT
GTCTCATTGAGAATCTCCGTCTTCTtgacatcatcatcatcatcatcatt
aataATGGCTTCGTCCTCTTTCTCAACAAACGCTGCAGTCGCTGCACGTC
TCAAAAGTGAAGCCGTCCTCGATCGGAACACACTCGATTACGCGACTGCA
GCATCGGTGGCTGGTAAATATCGGCCCGATAATGATGATTATCGGGGATT
ATCGAGGACAAACCCGAACGGTGATTTTCGATCGGAGCCTGATTTTAGGA
CGTCGCAAACCCCTTATCCTGGTGATTACCGAATGAGGGATGATTTTCGT
TCTTCCGATCTCAACGTAGGGAAGGATGCTGATTTTTCGGCCAATCGAGG
TCCCGTACCGGTGGGTTCGGGGCCGAGTGCCGGCGGGTACCCAGCTCATT
TTTGGAATTACGGAGCTAGTGGGAAGAGGTAAGAAAGTTAGTAATGAAAG
AAAATGgagaaattaaatatttaaNGTCCAGTACCGGTGGGTTCGGGGCC
GAGTGCCGGCGGGTACCCAGCTCATTTTTGGAATTACGGAGCTAGTGGGA
AGAGGTAAGAAAGTTAGTAATGAAAGAAAAGGgagaaattaaatatttaa
acTCGTTTCAATCATGAATCTGATTTCTTTCTCATCGTGATGAATATACT
GAATGGCCTGAATAGAGTTCGTTTGATATTTTGTTGTACgactttttttg
tgaattttaaaaGTGAGTTTCATTTGTGAAAGAGTCTGTTACTAAGACAC
AGAAAGGCGTTGTTAAGAACTGTGAAGTGAAGATGCTGAACAAATATGCT
TCAATGTTTACTGCCAAACGGTATTCTTCATTCTTCTCTTCGTTTGTGTA
ATAAACAACTTCTAAATGGTCTTGTTTACGTAAATAGAAGGGTATGATTT
AAAATACTTCTTTAGGCATGCATATTGTTACTACAAGTAGTTTTTAAGCA
TGAACTTAACTGTTTTTATGGCTTAGGCATCAACGCTTTCTTATCGCTAA
GGAAGCTTTAATGTTCGTAAGATTAAAGCTGACAtgtcagaaaaaaagtt
taaagtgcGCTCATTTCTCTTGCGTTCCTTTGATTGATGTGTATTGTGCG
TTGATGCTCTTTTTATTAGCTTAATTAACGACGTCGTCAAGGTGATTACT
GGTTGCTATGGTGAATAAGATAAAGGTTGACACGCCATTAATTTAGCGCA
GCGAGAGAGCCAgtgaaaaggaaaagaaatgCGCTCTTTTTTGATTCGTA
AAGGAAATTATGGACATTTGTTTTTGTGAAGAGGAAGTCAAGCTACCTCA
ATTCTTGCTCTCTAATACCGTCTGATATGTTACTCTCCGTTGCTAAGCTA
CCGCAAACGGTCGTTAGGTCGTTAATGACATATTTCCATAAATAAAAGGT
TTTGTTTAGAGATGACCTTGATTAGAATGTTTCATCTTTGTTGTGTCAAA
ACAACTTTGCTATGATTTATAAGAGCAGGAATGTCTCCTGGGATCTTAAA
CAAGAAATACTTAACTTCCATAATTCGATTAACTGGGTGAGAAATAGTAA
TATTGATAGTATGCTTAAAATTATCGGTTGCATGGATATTTTAAAAGTTA
ACATTTTTTAACAGTTGTAATGATAACATTAAGCTTACATCTTActatct
ttcttttcttcttctttttgcaGGGTCAGCAGTTTTCCATATGGTGCAGG
AGGGACTGGTAATGAGTCGATGTACTCTCAACAATCCAATCTTCACACGT
ACATGGACAGCCATGGAAATGCTTCACAAAACCAAATGTTCCAGTCATAC
TCCGCCCAAGGTGGTCATCCAGGCTCGATGGGGTTAGGCGTCAGTCCACA
GGCTATTGGTGTGGCTCAACAAGCACAATACTTGCAACCAGGACAAGCAG
CAAGCCAACGTGTTCCCATCTCCCACACAACACGTGCCTCGCCTATCACT
GTGAGTGAACATCTTCACATTTCTTTCTTCGAAATACGTGTTTTGAaacc
tttggatgtttttagctttttgagttttaaacctacaaatgttcttaaca
tgttcttattttcacaattttgtgagtatagtttgttctgataaaaaacg
tgtagctgtTAAACTGTCTTTCGATATCCCTTACAATACTTTTTGAGGAT
GATCGAgtgatgaaaatttttgagtttAATTTACGCCTGAGAACGACTTT
CTCTACTTTAAATTGTGCAACTGAGAGAGGACGCTTTGAAGAAATTGATC
GTCAATAGTTTCCTCATCGTTTCCCGTTATTGTCCGGGAGCTGGGGGAGG
TCAACTATGACAGTCGTAGAGGCACGTGCAAACATATATCATCATGCAGC
ACAATGCCTGAAGTTTCCGAATTTACTTGTTTGCCGTCCGAAATTTTCTT
GTAGATGTCTATTTTACGGACCGGAATGCAAAAATAGCAATATATTTTTG
ACGTCAATTGTGTTTACTAAGTTATATCTAACTTTTAAACAGTTTATTGA
ATTCAAATGAAACTTTGCCAATCTGTTACTGATAAATAGGGCTAACTCTC
AATAGCAAAAACATTGCTGTATCCCTtccagtttttttcatttcttggtA
ATCATGCAAAAGTTTCACCTTTTTTTCTACTCCTACCGACTaacgttttc
aaaaaaacatgttttaaaattaattttttgacgtattCTTACATTGAATT
AATCTTTAGCATGTAAGTAGTCgctgttgaaaattttgtttcaaaagctT
AAGTGAAactcaagatattcaatttcaaagaCAACCATGTATaatcaaaa
acataacaaaatgataaaactgacgtcaaaaacgaaaagtaaaaaataca
gaCCTAGACGtcaaaatggttcaaaaatacccagctttcgttttttatat
tCTAATATTTGGAGAATACCAAAACGCCGTACAATGTAATACATTACTAA
ACAATTTCCCCCCAAATAAGTTTTTGAGTATTAATAAGATAATAAGATAA
AAGGGAAATTGGGCTATGGATTGAAAGGGACATTGCAGAGGGAATGCTCT
GACGCCCATTTCCCCAATGGTCACGTGTAACTACCAGATGTCATTGGATT
GTACAATGTAATGACTTCTTTCTAAATAAAGATCACAAATAACGGAACCG
TTTCATTTCTGGACTGGTCACGAGCAAAAAACCACGCTTTTTAGCCGTCC
TCTGTAAAAAAATGGAGTGGGACAGTCCTgtcaaaaagagaagaaagaaa
aacataacGAAGAAGAAAGCAGAAATATGCGTTGTTGGCTGCCGCAACGT
TAAAGAACCTTTGACTTGTTTTTCATCTAAATCATGGGaggtaaaaagat
ttttctagCTTTTCTCTCTAATGAATGAGTTCCATTTCTGAGACGAATGC
GTATTTTTGCCGTGGTTTCAGATGGCAGATGGTCAaacatgaaataaaac
tagACAACAAGGTTTTAGCTGAAAAGTCAACTTGCTTTTAACTAATAATG
GATTTGActactgtttttattttgattgccgtttttattttgattgtcGC
TTTTGACAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTCCTACCAAACCTAATTTAAGTAAGTTGAACCTTG
ATCATATGAATAtgcttttcattttttgttcgcAGAAGTCAACTATATGG
GGATGGGCCTGGCAAACTcgattgagacagggttatcAATAGCTTGATAG
ATACTCACTTTTTGAGAACAGTGGGCTTTAACACTAGTCagtgttttttg
aaatttaatctcACTAAACGCCTGCGATAAACATTAGTAGCACGTGACTA
GTGTTAAAcaccacttttttcaaaatgctaaaatatttaGAACtagtttt
gattgtttccaaaCTTTAATATAGCTACCACCATCGACACCGACACATCG
TGCAtcttttgtaacaaaagaaaaacatcgcAAAATGGCACAGGATATGA
AATACTTCTCCAGTGTACAACTGAATCCTCTCTTGAAATGATTTCATCGA
TAATTGGTGAGAAGTCAACAAAGGAGATAAAAAACGCATGGTATCATCGA
TCATGTTACCGAATTCGCTCGAAGCCAAGTCAAGCCTTAAATGATTGTTC
AGATGAAACTGATTTGACGCGTGAAGAAAGTTTCGAAAGTCTAAAAGCCC
ATGTTACCAAAACCATCATTGAAAAGGGAAAAGTTGTTAAAATCAACGAT
CTCCGGACTTTCTACGAAGATGACCAGACCAGACGAAATCTCGAAGTCAA
AGGAACCACAAACCGACTTGTCAAACTTCGATTACAGAACACCTTTGGAG
AAAAGCTtaccttttttaagaaaacggaAACATCCTGCGAGGTGGTGTTC
AACAGCGCGGCGCTAACGATGAATATCGAAGcaaaatcaaaagaagaaaa
agtcaaagaagTTGCTCAGCTCATCAGAGAGGAGATCGAAAAAATGCCag
cacaattttcaaaatggcctCCGCCAGCAGAGGAATTGAAACATGAAAAA
GTTATCATTCCaccatttttgaaaatgctACTGACTTCCCTTTTGACCAC
CAAGAAGCCATCCGACCGCACTGTTAGATTAGTGAAATCGTTGGGTCAAG
ACATCATTTACAACTTTTCATCCGGTAGAACAAAAACTGTCAAGCACTGC
CAAGTTGGTTTGTTCACTAAACGAAAGACCGGATCAAAACAAATCATAAA
CTGTTTGAACAAGCTTGGTCACTCGACGTCCTACTGTGAAGTCAACCGTT
TGGAAACTGCGTTTGCTGAACGAGAGAATTGTAATAAATCAATGGCAACT
TATCTTCCATCTAAAGTAGTTCCTGGTCTTTTTGGAACTTTTGTTTATGA
CAATGGTGACCATAACCCTGAAACAATAAATGGCGAATCTATGCATTGTA
CCAATGGCATCCTGATCCAAAAACCGTCCGCTAAACAACAGCCAATTCCT
CAAAAGCCTGTCTTCAATTCATATTCGAATAAAAGATCATTCAATGGCAT
AAGAAGCGATTTGGAGCCGTACTACTCAGTTGCAAGGAGCAGCCCAAAGC
CAATCAGCAATATcgcctttcaaaattttaccaCCGTCAAAACACTCTCC
AAGAAAGAAGATTTCATTTGGATCATAGCACGTCAACAGGCCAGTCAACT
TCAAAAACCCTTGCTTCCTGGTTGGACAGGCTTCCACAACCTCACTAAAC
CTGAAAACAAAGATCCACATTCAGTCCATTACTTACCATCCATTGATAAA
CCACCAACAGAAATGTCCACAATTCAAGAGATTCTCAAACAGATCAAGGT
CAAATCAGAAGCAATCGGCCTTGAGNTTGTTTGAACAAGCTTGGTCACTC
GACGTCCTACTGTGAAGTCAACCGTTTGGAAACTGCGTTTGCTGAACGAG
AAAATTGTAATAAATCAATGGCAACTTATCTTCCATCTAAAGTAGTTCCT
GGTCTTTTTGGAACTTTTGTTTATGACAATGGTGACCATAACCCTGAAAC
AATAAATGGCGAATCTATGCATTGTACCAATGGCATCCTGATCCAAAAAC
CGTCCGCTAAACAACAGCCAATTCCTCAAAAGCCTGTCTTCAATTCATAT
TCGAATAAAAGATCATTCAATGGCATAAGAAGCGATTTGGAGCCGTACTA
CTCAGTTGCAAGGAGCAGCCCAAAGCCAATCAGCAATATcgcctttcaaa
attttaccaCCGTCAAAACACTCTCCAAGAAAGAAGATTTCATTTGGATC
ATAGCACGTCAACAGGCCAGTCAACTTCAAAAACCCTTGCTTCCTGGTTG
GACAGGCTTCCACAACCTCACTAAACCTGAAAACAAAGATCCACATTCAG
TCCATTACCTACCATCTATTGATAAACCACCAACAGAAATGTCCACAATT
CAAGAGATTCTCAAACAGATCAAGGTCAAATCAGAAGCAATCGGCCTTGA
GAGTGCTGATGCTGTCTTCGACCATGCTATATATGCCAAAGCACTGGAGG
TTATATTGGATCCAAAGAATTCCGAGATGAACGAGTTTATCAACCTCAGA
ATGGGAGGATTCCACGCCAGTCTTGTTTTCATCGCCGTAATTTGCAAGCG
ATTCTATGATGCTGGTTTGAAAGACGTCTTTGTCGAGACCAATCTTGTCG
GGTCAGAAATGACGAATTCCGTTCTGAGAGGGAAAAAGTACAACAAAGCT
GTAAGGGCGCTAAAAATCATGCACGAGGCTTTacaacgattaaagttcga
ggCGTTTGAGAACTGGCTTGAGGAGAACAAAGCAACCGTCAGGCTGACTG
AGGTGTTTGAGTCAAGCGATTTTCACATGTTTTTGGAAAAGCAGAATGAG
CAAACAATGAAATCTGCTACGACAAAAGCTGAAAAACTTTTCGAGTTGTT
TCAGATATTCGAAGCTTCGATCAATCACGGTGATCTAGGACCAATGGCAC
AATTTTGGCAAAGCTTTATCGATATGAGTCAAACTTTGTTGGATTACATA
AAGTCAATGCGCACGGGCGATTGGGATCTCCATCTATCATCATCAGAAAG
TATGCTGAAGTGGTTTCATGCATATGACCACACCAACTATGCTCGCCATT
TCACATATTGTTGGTCAAGTCAACAAAACCTCTCAAAAACACACCCGGAA
ATATTGAAGGAGTTCAAGGAAGGAAATTTcgtgtgcaaacgtactgcggG
CTCTTTCAATATGCTACCACCCGACCAAGTTATTGAGCAAACAATAAACA
AGGATCAGAAAGGACCTGGTGGCATCATTGGTTTCAGTACCTCAGAGAAT
ACAGTCCAACGATGGATCTTAACAAGCCATATCGCCGCGGAGATTTCAGC
TGACTTGAAGGAGAGTCTTGATATTGAAACTGCCAGCTCAAAACCGAAAG
ATTTAAACGAAACGATGAGATCTCGTGACGAAGAAGACATCATCAAGTGC
ATTGATATGATTTCTGCACGCAACAATCCGTTTGTAAAAAGCAGAAAGCT
GATCGGTCTCTCGTCCGGCGTGGTAGCCTCAGACGATATCACAAACGATC
TTCTCACTGCAGCAGATGTTGGTGAAAAACAGCTGAAAAGATTCGTTGCG
GAAAGAATTCAATCGTCCAAAATCAAATTCCACGACGTAATAAAACGAAA
CAACCTGAAGACCTTCagctcaattttcaaaacaacgcAGCATAAAGTCA
ACGACCAAATCATCACTATCAAAGCAGACCGAAATACATTCTCCCGTTTA
GTCGTCATACAGAGTAGCAGATCCATCGACCTGAGAGTGGTGCTCAATTT
CGAGCTCTGCTCTGTCCCTCTCTCACTGTCCGAACCGAACGGAACTCTTG
TCAAGAACAACAAGGCCAACTTATTCAATTCATTGATTGCTGATATCCCC
ACTGTGTCGTCTATTCCTTCAGAGCATTCTGTGATATTTGATGGAATGGT
CTTGCTGCAAAAGCTACCCAAAACTCTGAAGTCATTTGGTGAAGTTTCTG
ACTATCTTCTGAAGAAAGTTTTATCCGGAACAGCTAAACAAGTATACTTT
GTGACGGACCAGTATCTTCAAAATTCGATCAAATCAATGGAACGAACCAA
GCGATCTTCAATCGGCACAATCCGCGTGACAGCTCAACGGCGAGATCAAA
AGAAGCCCAAACAATTCAAGCAGTATTTACGGAGTGCAGAAAACAAGATA
GAGCTGATCAAGTTTCTGGTCAATGATTGGACGTCTAACAAACTTGCTAT
CACActccttaaaaataaaaagctttttGTCACGATTGAAGACCGTGCTT
ATTCAATCAATCTAACCAGCACCAAAAAAATCGAAAGGAAAGCAGTCCCT
GAGCTGTCTAGTCAACACGAAGAAGCGgacacaaaaatgtttttgtgtgc
TGGACATGCAGCTAGAtgtgggtttcaaaacatcaaaatcgTTACTGTCG
ATTCAGATGTTGCTGTGCTGTCAATATACTACCAGAATTTGCTCCAATCG
TCCCTATACTTGGAAATCGGAACATCAACGAAAACGAAATTGTTTGATCT
GAAGAGGAACATTATCGACAAAAATCTCCGAGAGATTCTACCAGCTCTTC
ATGCAGTCAGTGGATGTGATTCAACAAGTGCATTCAGCGGGATCGGAAAG
GTACAACTACTTTATTATGctatgaaattttttaacaaagagCATGGAGC
TTGAAGGCGATCTTTTTCAACTCAGAATTTAAATTTGAGAATTCCTTTCC
GTATGCGATTCTTATTAAATATGTTATACTGTGNATTTGAGAATTCCTTT
CTGTATGCGATTCTTATTAAATATGTTATACTGTGGCATTCTTTGACATT
TTAAGAAATAAGTGTTTCAtctgttttgactttttttatataatatatat
tttatacatTTTAATATATTATGATAATATTTTTGTAGGTAAAATGCAAA
ACAGTGATGATGTCGAATAAAAGATTCATAGAGGCGGCTAAATCAATCGG
CAACAACTACAACATATCAGACAATGTTATCAACACGTTAGAAGAATACA
TGTGCAAACTGTACGGGACTGATCATACCAATATCAACGAAGCCCGTTAT
CATTTGTTTACAAAGTCAAAAACAATTCCTGATCCGAACAGGTATGTTTT
CAGTCCACATCcttgaaatttcacaaaaagtaTCTTCTACCTATAGACCA
TCCTTTGTTTATTTGTGATTGTTTGTTACCGTTGACATAAAATAAATAGC
TACAAGAGGCTAATGAAATTCAACCTATTTAAAGCTTACAAAAGtcttaa
atgaaatgaaatatcCTTTTGGTGTGGCACTAGCATTAGTAAAGATCTGG
AAATacaatcgtttgttttatttctacttTAAGACTTCCACCAACGAGAG
ACGCATTGTATCAACACATCAAACGAGCTAACTACCAAACCCGAGAGTGG
AAATTGGCAATGGACCGGTTTTATCAATGGGAATCCCCTGTTGGGCATGG
TACGCTCATATTTATTGCTAATCTTTgacaaaatatatcaaataaGCTAG
TAAAGGTAGTAAATCGAACATAAAGATGTCGGTAGGGTTATGATTAACAA
GGGTTATTTTGGcctatttgaaatttcttcttgTTTAAAGANCATTTTTG
accaaatttatcaaataagCTAGTAAAGTAAAGTAAATCGAACATAAAGA
TGTCGGTAGGGTTATGATTAACAAGGGTTGTTTTGGtctatttgaaattt
cttcttgTTTAAAGAGATGCATTTTAAATCTTTAGGATGGATGGATACAG
GAGGCGTACTTAATGTCAACTGGATGGAAAACAAGCCCGCCCCTGACACA
GTTCTCGAGTTTGCATCTTGTAAGTGCAAGAAAACTAAATGCTGTAACAA
GCAATGTAAATGTAAATCGCTTGGACTCCCTTGCACCGATTTATGTGAAT
GCGTGAACTGTGAGAACGAACCAATTGCCTCTGAAGAGCAGAAAGACGAC
GAAGTCGTCGGTGATGACGAGGGAATGGACGATGACGTAATCGATTTTGA
CGATTTATTGGATGAAGGCGATGACAAttctttttataactttttatagc
ttttttattccttttttactCAGAAAATGAGCCTTATTAgttaaaatttt
ctactttgttGCTATTCATTGCTAAATCTTTTAACTTTCATCCAAATACA
TTTAATGAAATGTAAGCGAGTTTTTTATTGAAGATGTGCATCATTACCAG
AGAAATTTACTATGTTAATATTGGTTTTGAATGTAattttaattgataat
tatTTTATATCACTGTTTATAACAATATTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGATATATGTTTGCACGTGCCTCTACGACCGTCATAGTTGACCT
CCCCCAGCTCCCGGACTATTATTTATCTTTTACACTTGTTCTTGAAATTG
CgtcaaattttcttcttctcccTCATCCTCCAGGTGCAATGGTTACTGGA
GAATTATGAAACATCTGACGGCGTAAGTTTACCACGAAGCACCCTCTACC
ATCACTATCTCCGTCATTGCGCCGAAAACAAAATCGACGCCGTCAACGCA
GCAAGTTTCGGGAAACTCATTCGCTCCGTTTTCGTGGGATTGAAAACCAG
ACGTCTTGGTACAAGGTGATTATTCCTTTTCATAACATTTGAAGTTTTAA
GCTATTTCGTAAAGCTTTTGTGAAAGTATGCTTGAAAGTTACGTGAAATT
ATGCTTGGTATTGAAATTTGGACGTTAACTTTTATTGTCTCATAAGCTTT
CTTAACCAATCAGTGAGTCCTTGTCCATTTTTCACCTTTTCgtcattttt
aattgttttattcTTCAGAGGAAATTCCAAATACCATTATTATGGCATTC
GTGTCAAACCCAACTCACCCTTGGCTCGCATCACCGATGATACCCATGTT
GCATTGCGCGCAACCCCTACAAGCTCCAAACGCTCCATGGGCTCTAATAA
TTATGATGAAGAAAGGCGGACTGAGGGTGCCGCCAGCAATGCGGAGGATT
CAAGCGCCCTTTCCGCCCATCAACAATATTTGGGAGATGTTGGGGATGGT
TTGCCAGAGGGTCCTGTCATCGATCTCACAGAACCCCTTCCTGAAGGact
gaaaaaagaagacgttatcACGTTTGGAAATTATTACCGCAGCCATAGTG
AGGTAGGGaaacttttccttttttcaagTCTCAAGTATAAgttttcataa
tttgaaacgAACCCAACAATTATCTTCtgttttgaaggaaaattatcaaa
atagtAAACTGCTAAAActgttttttctcttttaaaaaaattaaatgaaa
aggTCTAAACATATAACCAATTGTTAACCTTTTCTTTAGGCTTTGTTGGA
AGTGATCAGCACTTTACAGTTCGATTTGGTGGAAGCTCTTTGGCAATCCT
TTTATAAGAGTCCGGCAGCCGCCAACAAAGCTGACAACGGAACTTTGGAT
AACAACGAGTTCAATATCACTAAGAATGACCTCATCACTTTCTGTAACTA
CAAACCTGTCCAAGTTTTCATCAAAGAGACCGATTACATTTTGTATCAGA
AACTTGTCGGTGTTTTGGTTCCGGATGTTTTGAGAGCTGTGCCAAGTGCG
TTGACGCAAATCGTTCGTAATTTTGCAAAGAGTCTGGAGAATTGGTTGGT
TGGAAGTATGTCGGAAATGCCAAAAGAAATCTGCAATGTTAAAGTGAGTG
CTTGTTTGCTGAATAGTTAATACttcgttaatttttgacccagGGTTGAA
CAGTCATTAACTTTTTTCACTAGCTGATTTTGGATGTTTAGAAGAGGAGG
CCTGTTTGACtacaaatattcaaatttttaaatcaatgtACAATCTTGAA
TGAACAAAACTTGATCTTAGAATAAAATTGCTTCTTGGAGAAAAGAAAGA
AGCAATCTCTCTTGTATTTACTCTATTTTCTCTAAAACTCTCGATAACTT
TTGACTTCCATTCAGGTTGCAGCTGTTAGTGCTTTTTCCCAAACTCTTCG
ACGATACACATCGCTCAACCATCTCGCGCAAGCCGCGCGGGCGGTCTTAC
AGAACTCGCAGCAAATCAACCAGATGTGGAACGATCTGAACAAAGTAGAC
TTCAACAACGTTCAAGAACAATCGTCATGGGTTTGCCAATGCGATGAATC
TCTCATCGCCAAACTCGAACAAGACTTCAAACAAACTCTTGCTCAACAGG
TAAACGATGATGATTGTTTTTTCTGTATAATCGTTCTCCGCTCATTGAGT
GTGCCCAAGTCGATTAACAAATTataaaaagtgatgaaattttagttttt
tttatctcTTCATTCAATAGGCTGATTATGAATTACAAAAACTCTTTACT
GACAAACAAAGTCTTGACGAATATGTCCTCTCTTTTTTCAGCATTCACTG
GAGCAATGGGCCAAATGGTTGGAGTCGGTGGTTGCCATGGTATTGGAACC
TCACCAGGGACAAGAGTCGTACCCAAAAGCCGCTCGTAACTTCTTATTAA
ACTGGTCTTTCTATTCTTCAATGATCATTCGCGATTTGACGCTACGTTCG
GCGGCGTCTTTCGGTTCGTTCCATTTGATTCGTTTGTTGTATGATGAATA
CATGTTTTATTTGATCGAACACAAAGTGGCCGCCCATACTGGCAAGTCGC
CTATGTCCGTCATGGCAGAGTGTGTCGGtggaatgacgtcatcaagtaaC
GGTAACCAAGGCAACGATGATGAGGACGAATTGGACGAAAATTCGAACGA
CGGTTTGTCGGCACTGACGAGTGGAGACGTCTTGAAGACTGGTGCCAATC
TCACGATGTCACAAATTAACGAAGGCATGGAGCCAGTTGCTAAGAAACTA
AAACCTGATCATTTGGGTTGAACTATTActttatattttataattttatt
tttttggtaaaatttgaaacaattttaaaaagatgtagAAGCATTGTACA
Tattatatttagatttttttcctttgatgacaatttttttttttggtttg
ttcTTTGTCATCAattattatcattatcatttgtacaaaattttcctttt
atcTTGATCAATTTAGATTTGTTTAAAATGTTATTTGTGAAAattattga
caatttttttgaatagaAATTTTACGTCAATCATATTATTTGGGTAAAGA
CATTTTTCAGAATAAGACAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046012-exon-scaffold_105-1491911889:631128..631655 | TCONS_00046012-exon-scaffold_105-1491911889:631128..631655 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1510915933:631128..631655 | TCONS_00046012-exon-scaffold_105-1510915933:631128..631655 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1575043694:631128..631655 | TCONS_00046012-exon-scaffold_105-1575043694:631128..631655 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1491911889:632901..633177 | TCONS_00046012-exon-scaffold_105-1491911889:632901..633177 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1510915933:632901..633177 | TCONS_00046012-exon-scaffold_105-1510915933:632901..633177 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1575043694:632901..633177 | TCONS_00046012-exon-scaffold_105-1575043694:632901..633177 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1491911889:643011..643192 | TCONS_00046012-exon-scaffold_105-1491911889:643011..643192 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1510915933:643011..643192 | TCONS_00046012-exon-scaffold_105-1510915933:643011..643192 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1575043694:643011..643192 | TCONS_00046012-exon-scaffold_105-1575043694:643011..643192 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1491911889:643396..643729 | TCONS_00046012-exon-scaffold_105-1491911889:643396..643729 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1510915933:643396..643729 | TCONS_00046012-exon-scaffold_105-1510915933:643396..643729 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1575043694:643396..643729 | TCONS_00046012-exon-scaffold_105-1575043694:643396..643729 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1491911889:643917..644270 | TCONS_00046012-exon-scaffold_105-1491911889:643917..644270 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1510915933:643917..644270 | TCONS_00046012-exon-scaffold_105-1510915933:643917..644270 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1575043694:643917..644270 | TCONS_00046012-exon-scaffold_105-1575043694:643917..644270 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1491911889:644543..644776 | TCONS_00046012-exon-scaffold_105-1491911889:644543..644776 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1510915933:644543..644776 | TCONS_00046012-exon-scaffold_105-1510915933:644543..644776 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1575043694:644543..644776 | TCONS_00046012-exon-scaffold_105-1575043694:644543..644776 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1491911889:644969..645750 | TCONS_00046012-exon-scaffold_105-1491911889:644969..645750 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1510915933:644969..645750 | TCONS_00046012-exon-scaffold_105-1510915933:644969..645750 | Clytia hemisphaerica | exon |
| TCONS_00046012-exon-scaffold_105-1575043694:644969..645750 | TCONS_00046012-exon-scaffold_105-1575043694:644969..645750 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:631128..645750 + |
Blast
BLAST of TCONS_00046012 vs. Swiss-Prot (Human)
Match: RFX3 (Transcription factor RFX3 OS=Homo sapiens GN=RFX3 PE=1 SV=2) HSP 1 Score: 581.637 bits (1498), Expect = 0.000e+0 Identity = 300/604 (49.67%), Postives = 398/604 (65.89%), Query Frame = 2
Query: 509 YGASGKRVSSFPYGAGGTGNESMYSQQSNLHTYMDSHGNASQ-NQMFQSYSAQGGHPGSMGLGVSPQAIGVAQQAQYLQPGQAASQRVPISHTTRASPITV-------------------------QWLLENYETSDGVSLPRSTLYHHYLRHCAENKIDAVNAASFGKLIRSVFVGLKTRRLGTRGNSKYHYYGIRVKPNSPLARITDDT-HVALRATPTSSKRSMGSNNYDEERRTEGAASNAEDSS------------ALSAHQQYLGDVGDGLPEGPVIDLTEPLPEGLKKEDVITFGNYYRSHSEALLEVISTLQFDLVEALWQSFYK-SPAAANKADNGTLDNN----EFNITKNDLITFCNYKPVQVFIKETDYILYQKLVGVLVPDVLRAVPSALTQIVRNFAKSLENWLVGSMSEMPKEICNVKVAAVSAFSQTLRRYTSLNHLAQAARAVLQNSQQINQMWNDLNKVDFNNVQEQSSWVCQCDESLIAKLEQDFKQTLAQQHSLEQWAKWLESVVAMVLEPHQGQESYPKAARNFLLNWSFYSSMIIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHKVAAHTGKSPMSVMAE 2188
Y R +++PY MYSQ + Y D+ G+++Q + S+S G G + +GV+ + + YL + ++HTTRASP T+ QWLL+NYET++GVSLPRSTLY+HYLRHC E+K+D VNAASFGKLIRS+F+GL+TRRLGTRGNSKYHYYGIRVKP+SPL R+ +D ++A+R P K+ Y ++ +G A S A S H Q D LPE ++++ LP+G ED+ + + YR H EA+L+V+ LQF L+E LWQ+F++ SP+ T +N E + K LIT C ++ + ++ D+ +YQ LV +L+PDVLR +PSALTQ +RNFAKSLE WL +M+ +P+ + KVAAVSAF+QTLRRYTSLNHLAQAARAVLQN+ QINQM +DLN+VDF NVQEQ+SWVCQCD++++ +LE DFK TL QQ +LEQWA WL++V+ L+P++G+ S+PKAAR FLL WSFYSSM+IRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA TG++P++VM E
Sbjct: 67 YTNGAIRTTTYPYT-----ETQMYSQNTG-GNYFDTQGSSAQVTTVVSSHSMVG--TGGIQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPATIEMAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPVNAASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQ-----RYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEISS-LPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMGE 656
The following BLAST results are available for this feature:
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