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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046001 ID=TCONS_00046001|Name=TCONS_00046001|organism=Clytia hemisphaerica|type=transcript|length=1553bpRun BLAST on NCBI protein sequence of TCONS_00046001-protein >TCONS_00046001-protein ID=TCONS_00046001-protein|Name=TCONS_00046001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=501bp MSSSKRKLKAKKNSPNEENVKKQIMDPKEVLSPLSYPDDVTEKITSAFRDRun BLAST on NCBI transcript from alignment at scaffold_105:526020..540011+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046001 ID=TCONS_00046001|Name=TCONS_00046001|organism=Clytia hemisphaerica|type=transcript|length=13992bp|location=Sequence derived from alignment at scaffold_105:526020..540011+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_105:526020..540011+ >TCONS_00046001 ID=TCONS_00046001|Name=TCONS_00046001|organism=Clytia hemisphaerica|type=CDS|length=21084bp|location=Sequence derived from alignment at scaffold_105:526020..540011+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046001 vs. Swiss-Prot (Human)
Match: OGFD1 (Prolyl 3-hydroxylase OGFOD1 OS=Homo sapiens GN=OGFOD1 PE=1 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 8.856e-67 Identity = 148/345 (42.90%), Postives = 205/345 (59.42%), Query Frame = 3
Query: 111 KEVLSPLSYPDDVTE-----KITSAFRDKTDHDNDDVTFCTKPFPHWTIKNFVXXXXXXXXXXXXXXXXXXXXXYTDLFKFSQSEDIKNRKTHSISTFRDCLFTQFRGWLEIVLDTKMSDTIDMSCAKYNYTDFLLCHDDKVEDRQIAFIFYMVPDDWSNEDGGRLDLFN-NKDGQPSDLHKSLIPSFNSLVFFEVSDTSFHQVSEVLSDSKTRLSISGWFHS---TTDPHFKLFKHVETITKTQPLDLDQEVLLEWIDKRYLLPEITNDIQEEFEENSEIQLTNFLKQEMYDQLKEELLSIKERNWKEKGPINRRKLWTLKEDSLDKNGMIYKFLQLVRSGPFF 1118
KEV++ S D VTE ++ A+ +T ++ + PF H I NF++ + L+ L+ +L+ L F KY DL+KF QS+D+K R+ IST R LF FR WL + + TIDMSCAKY +TD LLCHDD++E R+IAFI Y+VP W GG LDL++ ++ QP + KSLIPS+N LVFFEVS SFHQVSEVLS+ K+RLSISGWFH T P++ I ++ + D E+L +WI+ YL + IQEEFEE+SEI L FLK E + ++ E L W +GP N+R +E L + ++ + ++L RS F
Sbjct: 20 KEVMAEFS--DAVTEETLKKQVAEAWSRRTPFSHEVIVMDMDPFLHCVIPNFIQSQDFLEGLQKELMNLDFHEKYNDLYKFQQSDDLKKRREPHISTLRKILFEDFRSWLSDISKIDLESTIDMSCAKYEFTDALLCHDDELEGRRIAFILYLVP-PWDRSMGGTLDLYSIDEHFQPKQIVKSLIPSWNKLVFFEVSPVSFHQVSEVLSEEKSRLSISGWFHGPSLTRPPNY----FEPPIPRSPHIPQDHEILYDWINPTYLDMDYQVQIQEEFEESSEILLKEFLKPEKFTKVC-EALEHGHVEWSSRGPPNKRFYEKAEESKLPE--ILKECMKLFRSEALF 354 HSP 2 Score: 81.2629 bits (199), Expect = 3.531e-16 Identity = 43/110 (39.09%), Postives = 60/110 (54.55%), Query Frame = 3
Query: 1194 PSCLVDTRLWKHGAFTILQDEQFKGEACLDCIFNIDCDAFEESERGYISYVAGEDTEELVTVYPTSNCLSLVYRDESTTRFVKYFDDKYCGDKI-------FFDFDMIYF 1502
P C + R WK G +T++ D K E LD I C+ +E G+ SY+A + EEL+TV P SN L+LVYRD T +FVK+ + + K F+DF IY+
Sbjct: 433 PMCQGELRHWKTGHYTLIHDHS-KAEFALDLILYCGCEGWEPEYGGFTSYIAKGEDEELLTVNPESNSLALVYRDRETLKFVKHINHRSLEQKKTFPNRTGFWDFSFIYY 541 The following BLAST results are available for this feature:
BLAST of TCONS_00046001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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