TCONS_00045952 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045952
Unique NameTCONS_00045952
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045952 ID=TCONS_00045952|Name=TCONS_00045952|organism=Clytia hemisphaerica|type=transcript|length=2338bp
gaattttggaatttagttTTTAGACGCACGCATCCTTTATTTTGTCGTAC
AAACGCGCAATTATGTTATTTAGTTCTCAAAATATTGCTAAAATGGATGC
TCCAGACATGCAAACATGTCACTTCTGCGATGGAAAACCAACGTTTTTCA
CCAGTTTAGAATTCAACCAACATCAGAGCTCGTTCCACATGGATGTTGAT
CAAAAAATGATCAAAGATAAACTCGAACTGTTGAAAACTTCAAAAACGAA
TCTCGTGAATAAAACTACAGTTATCAAAGACGAAATCAAACTTATGCGAA
AACACAATTTAGCCGATGAGAGTGTCATTGGTCTTTTGCAACACGAGTTG
ACATCGCTGAAAATGAAGATTCAGGAGAAGAATCAAGACATCAAAATGTT
TAATGACTACCAGAAGAAGTCAACCTCCAACCAATTCGTTAACGATTTGA
CAGAGCGCTTGGATAAGGTTTACATAAACTCGATCAGTCATCGGGCCTTT
GAGGCTGATCCAGCACCAACACCAACGACCGTGTCTACAGCAAGCTCTGT
TGATGAAGACTTATCACATGAAACATCACTTCTCCGTCAAAAACTCTCAG
AATCGAGTTTTCTCATCGAAGACTTGACGGAGAAGAGCAAAGTGGTCGAG
ACAGACTTGATGAAAGCGTTAGAGAGCCTTGACTCATCGAATCTTACTGT
CAGGCAACTGACAGATGAGAAGAAGATAATCGAGGCAGATCTCTACGCCA
AGGAGCTTAAGATCGAGCAACAAATCAAATTAATCCATGAGATGGAATCG
AATTCGCCATCGAATGATGATGAAAAGTTTGAGCTACTTTGTGAACGCCT
GGCTGCAACCGACAGCGAGATGATGAAATTAATCGAGTTCGTGGatcaaa
aaaatgtagatttAGAACAAGCTTATAATGACCATAAGTTGCTTGAGAAC
GAGAACAGTATTCTGGTCAAATTAGTTGAAGATTTGAAAGAAGAGCAATG
TGAAAGATTTTCAGAATGGGAGAAAAATGTGACTGGACTCAAGGCTGAAT
TGAATGATTTAGAGAAAGAAAAACTCTCTTTGTTATGCAGATTAGAAGAT
TATGAGGTCGCCAGCAGGAATCAGGTTGCCAAGAACGATCAGTTGGAGAG
ACTAGTGGCAGAGCTGGAAGCTCAAAAAGCTGACGACAAGAAACACATCT
TCGAGTTGACTACCGAACGAGATTCTCTTAAAAAACAATTGCATTCTTTA
CAATTGAAATACGACGATTGTGTGAAGGAAAGCaatcaattcaaaatatc
ataCGAGAGGTCATTGCAAGATAATCAATCTCTGAAAGACAAGATTCTTG
ACTTACAAACTCGTTTGGAATCTGGTGGAGCTTCGAAGCAACGGATTCTA
CAGCTGGAAGAAGATTTAGCTAGCTTACGTCAAAAACACAACGATGCCAC
CCTAAGAGTTGACGAAATGACACACGAATTAAATACATCTAAGGAAGATC
TCAACTCGGCTAAGGACGAGATCAAATATCTGAATGACAAGATAGTCCAT
TCGGATAGTTTACTAAGAGACACGAAGTTGTCGctggagaaaaaagaaaa
agaggttCAACTGAAAAATACGAAACTGCGAAAGCAGGATAATGAAATTT
CACAGTTCCTCGATCAGCGCTCCGACCTAAAAAGCAAAATCACAAATCTA
GTCAAGAGCACTGATAAACATAGAATGGCCAAAGAATTGGCCGAACAAAA
GCTCAAAGAGGAAAAGATGCGATCGTCAGAATTGAACGAGATAGTTAATG
AGCTTCAGGATGCTGAGCAATGCAATGACCAAGCGACTGAAACTCAACTC
TTGGTCGAACAACAAAAGAGAATGGAGTTGGAAGAAGCTCTTGAGAACGA
GAAACAAAAAACAGCATCACTCCAGGAAGTCATTGCTAAAATGCAAGCAG
AGATGGAAGCCATGCGAACATCGAATAAATCATTGGAAGCTGTTGTTCAA
GACCAAGAATGTCTTGAAAATCCAACATCGAAGTGCTCAGATGACGATAG
TGGACCTTCAGAACCATTGCCACTGATGTCTCCCGATTTCAGTTACGGCA
ACACTAAAGAGGACAATATTGGCCGCGCGGATGAAGCGTTCATTTGTTCG
TCAGACGAAGAAGTCCCTACTCCTAAGTCTTCATCAACCTCTCTTTGTGA
TGGATCATTGATGTCATGTGGAAAGGAGCAAAAGGAGAAGAGCATCAGTA
ACAGTAGGGAAGAAAATGCAGATGACAATCTGACACCATTAAAAGTAGAA
GAAGATGATAGTGACTTCTGTTTGTCAGATGACGAGGA
Run BLAST on NCBI

transcript from alignment at scaffold_104:121391..125514-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045952 ID=TCONS_00045952|Name=TCONS_00045952|organism=Clytia hemisphaerica|type=transcript|length=4124bp|location=Sequence derived from alignment at scaffold_104:121391..125514- (Clytia hemisphaerica)
GAATTTTGGAATTTAGTTTTTAGACGCACGCATCCTTTATTTTGTCGTAC
AAACGCGCAATTATGTTATTTAGTTCTCAAAATATTGCTAAAATGGATGC
TCCAGACATGCAAACATGTCACTTCTGCGATGGAAAACCAACGTTTTTCA
CCAGTTTAGAATTCAACCAACATCAGAGCTCGTTCCACATGGATGTTGAT
CAAAAAATGATCAAAGATAAACTCGAACTGTTGAAAACTTCAAAAACGAA
TCTCGTGAATAAAACTACAGTTATCAAAGACGAAATCAAACTTATGCGAA
AACACAATTTAGCCGATGAGAGTGTCATTGGTCTTTTGCAACACGAGTTG
ACATCGCTGAAAATGAAGATTCAGGAGAAGAATCAAGACATCAAAATGTT
TAATGACTACCAGAAGAAGTCAACCTCCAACCAATTCGTTAACGGTACGC
ATTCTTCTTTTGACATACCTTAAAATATAACTTAAGTTATGGTCAACAAT
AATGTGAAATAGGTTGCCGGCAACCAAGATTGGTAGGGCAGTGAGGCTGG
AACTTCGATTTTTGAGGATTACGATTTTACCAGTTTTTTAGCAATTTTTG
CCTCGCTATCCCAAATCTCGCAACCTCTATACCTTAAGGAAGATCGAAAT
TAGAGTTTTTCAGCGTTCCGAAAAAAACGCATAGCAGAAATTTTTTCATC
TTCACAGGATCGATTCTCAACAACAAAATACNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTGGGCGAATAAAGATGAGGCGGCAA
TCTTGCACTGAGGGTGCTACTTAGTTTCCGCCCTATTTTGCGCCCACGAT
AGAATGGTTCAAACACGGGGATAGTCTAAATGATAAACTATGTCGTTCTG
TAAGTTTTTATTTTCTGAGAGATACAAATAGTATATTTGAATATTATTAA
CTTATTTATTAAAGTATTTCTCAAACCCCTGGGAAAAGTTTTTTTGCTGA
CTTAGCTATTTTACAAATCTCGGAAAAGAACTCCCATAGGAATTCCGATA
CCTAACCCGATTGGTTAATTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAATTTATCGATGTTGATGGCTTGTTGATTCTTTAAAGAAA
AAAGATAACAGGTATAGCTTTTTCTAATCCTGGAATATCGAGGTTCCAGC
TACACTGTAGGGCGGGAGGGATGTAAAAAACTCCAAGACTTGAGAATCTT
TAAGAAAGAAAACTAGAATTTCTTTCCTTCCACTTTCCTCCAGACCTGCC
GAAAAAATTAAAAGAAAAGTCCACTTACAAACTGATGATAGTAAACAAAA
CCTCGATGTTTTTAAAGTAGGGCTGGGAGGTCCCTTGAAAGCATCATGCG
CTTACGTAAAAATTTTTCATGAATTATCTTAATTGATTTATAGATTTGAC
AGAGCGCTTGGATAAGGTTTACATAAACTCGATCAGTCATCGGGCCTTTG
AGGCTGATCCAGCACCAACACCAACGACCGTGTCTACAGCAAGCTCTGTT
GATGAAGACTTATCACATGAAACATCACTTCTCCGTCAAAAACTCTCAGA
ATCGAGTTTTCTCATCGAAGACTTGACGGAGAAGAGCAAAGTGGTCGAGA
CAGACTTGATGAAAGCGTTAGAGAGCCTTGACTCATCGAATCTTACTGTC
AGGCAACTGACAGATGAGAAGAAGATAATCGAGGCAGATCTCTACGCCAA
GGAGCTTAAGATCGAGCAACAAATCAAATTAATCCATGAGATGGAATCGA
ATTCGCCATCGAATGATGATGAAAAGTTTGAGCTACTTTGTGAACGCCTG
GCTGCAACCGACAGCGAGATGATGAAATTAATCGAGTTCGTGGATCAAAA
AAATGTAGATTTAGAACAAGCTTATAATGACCATAAGTTGCTTGAGAACG
AGAACAGTATTCTGGTCAAATTAGTTGAAGATTTGAAAGAAGAGCAATGT
GAAAGATTTTCAGAATGGGAGAAAAATGTGACTGGACTCAAGGCTGAATT
GAATGATTTAGAGAAAGAAAAACTCTCTTTGTTATGCAGATTAGAAGATT
ATGAGGTCGCCAGCAGGAATCAGGTTGCCAAGAACGATCAGTTGGAGAGA
CTAGTGGCAGAGCTGGAAGCTCAAAAAGCTGACGACAAGAAACACATCTT
CGAGTTGACTACCGAACGAGATTCTCTTAAAAAACAATTGCATTCTTTAC
AATTGAAATACGACGATTGTGTGAAGGAAAGCAATCAATTCAAAATATCA
TACGAGAGGTCATTGCAAGATAATCAATCTCTGAAAGACAAGATTCTTGA
CTTACAAACTCGTTTGGAATCTGGTGGAGCTTCGAAGCAACGGATTCTAC
AGCTGGAAGAAGATTTAGCTAGCTTACGTCAAAAACACAACGATGCCACC
CTAAGAGTTGACGAAATGACACACGAATTAAATACATCTAAGGAAGATCT
CAACTCGGCTAAGGACGAGATCAAATATCTGAATGACAAGATAGTCCATT
CGGATAGTTTACTAAGAGACACGAAGTTGTCGCTGGAGAAAAAAGAAAAA
GAGGTTCAACTGAAAAATACGAAACTGCGAAAGCAGGATAATGAAATTTC
ACAGTTCCTCGATCAGCGCTCCGACCTAAAAAGCAAAATCACAAATCTAG
TCAAGAGCACTGATAAACATAGAATGGCCAAAGAATTGGCCGAACAAAAG
CTCAAAGAGGAAAAGATGCGATCGTCAGAATTGAACGAGATAGTTAATGA
GCTTCAGGATGCTGAGCAATGCAATGACCAAGCGACTGAAACTCAACTCT
TGGTCGAACAACAAAAGAGAATGGAGTTGGAAGAAGCTCTTGAGAACGAG
AAACAAAAAACAGCATCACTCCAGGAAGTCATTGCTAAAATGCAAGCAGA
GATGGAAGCCATGCGAACATCGAATAAATCATTGGAAGCTGTTGTTCAAG
ACCAAGAATGTCTTGAAAATCCAACATCGAAGTGCTCAGATGACGATAGT
GGACCTTCAGAACCATTGCCACTGATGTCTCCCGATTTCAGTTACGGCAA
CACTAAAGAGGACAATATTGGCCGCGCGGATGAAGCGTTCATTTGTTCGT
CAGACGAAGAAGTCCCTACTCCTAAGTCTTCATCAACCTCTCTTTGTGAT
GGATCATTGATGTCATGTGGAAAGGAGCAAAAGGAGAAGAGGTAAAGAAG
TTGGTTTATTTTTGAACAAAAAATCGAATGACATTAAGCTTTTGAATGAA
AGATTCTTTGTTAGAATGTTAGAACTTTAGTTTAGAAGTCAGCTATCAAA
ATAAATTGAGGCAGCTGGTTTCAAATTTTGTCCCGGTTTAAATTTCAGTT
GCCTCTTTCCTCACGTCAATTTTAATAAGTTCAAATGCCAGTGACCCAGC
ATGCCTTTGGAAAATTGCGTGTTTAACTCCTTTTGTTATGCTAAATTGTT
AATGAAAAATCCGTTTTGCTGAGTCTTCGTTACGCTTTAGTCAACCTTCT
TTGCATGACCAGGTTTTAAAGCATGGTACAAAATCTGTTTCATAATTTTC
TCTCTTTTTTTAGCATCAGTAACAATAGGGAAGAAAATGCAGATGACAAT
CTGACACCATTAAAAGTAGAGGAANTAGCATCAGTAACAGTAGGGAAGAA
AATGCAGATGACAATCTGACACCATTAAAAGTAGAAGAAGATGATAGTGA
CTTCTGTTTGTCAGATGACGAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029367XLOC_029367Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045952-exon-scaffold_104-1575043694:125071..125514TCONS_00045952-exon-scaffold_104-1575043694:125071..125514Clytia hemisphaericaexon
TCONS_00045952-exon-scaffold_104-1575043694:121924..123721TCONS_00045952-exon-scaffold_104-1575043694:121924..123721Clytia hemisphaericaexon
TCONS_00045952-exon-scaffold_104-1575043694:121391..121486TCONS_00045952-exon-scaffold_104-1575043694:121391..121486Clytia hemisphaericaexon
TCONS_00045952-exon-scaffold_104-1510915933:125071..125514TCONS_00045952-exon-scaffold_104-1510915933:125071..125514Clytia hemisphaericaexon
TCONS_00045952-exon-scaffold_104-1510915933:121924..123721TCONS_00045952-exon-scaffold_104-1510915933:121924..123721Clytia hemisphaericaexon
TCONS_00045952-exon-scaffold_104-1510915933:121391..121486TCONS_00045952-exon-scaffold_104-1510915933:121391..121486Clytia hemisphaericaexon
TCONS_00045952-exon-scaffold_104-1491911889:125071..125514TCONS_00045952-exon-scaffold_104-1491911889:125071..125514Clytia hemisphaericaexon
TCONS_00045952-exon-scaffold_104-1491911889:121924..123721TCONS_00045952-exon-scaffold_104-1491911889:121924..123721Clytia hemisphaericaexon
TCONS_00045952-exon-scaffold_104-1491911889:121391..121486TCONS_00045952-exon-scaffold_104-1491911889:121391..121486Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_104supercontigscaffold_104:121391..125514 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.149976	0.0436119	0.379297	0.279736	0	0.0420438	0.14997	0	0.0702123	0.0118939	0	0.0414539	0	0	0.00946239	0	0	0	0	0	0	0	0	0	0.0367025	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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