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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045888 ID=TCONS_00045888|Name=TCONS_00045888|organism=Clytia hemisphaerica|type=transcript|length=3663bpRun BLAST on NCBI protein sequence of TCONS_00045888-protein >TCONS_00045888-protein ID=TCONS_00045888-protein|Name=TCONS_00045888-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp MEPITLLYWAMLYLIGIFFTVVIPAAFNISLGLRDKYIQLLYKVFEFGYDRun BLAST on NCBI transcript from alignment at scaffold_102:294082..310123- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045888 ID=TCONS_00045888|Name=TCONS_00045888|organism=Clytia hemisphaerica|type=transcript|length=16042bp|location=Sequence derived from alignment at scaffold_102:294082..310123- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_102:294082..310123- >TCONS_00045888 ID=TCONS_00045888|Name=TCONS_00045888|organism=Clytia hemisphaerica|type=CDS|length=19440bp|location=Sequence derived from alignment at scaffold_102:294082..310123- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045888 vs. Swiss-Prot (Human)
Match: GPAT4 (Glycerol-3-phosphate acyltransferase 4 OS=Homo sapiens GN=GPAT4 PE=1 SV=1) HSP 1 Score: 397.127 bits (1019), Expect = 3.054e-125 Identity = 215/417 (51.56%), Postives = 300/417 (71.94%), Query Frame = 3
Query: 663 VVIPAAFNISLGLRDKYIQLLYKVFEFGYDRMK-----KNNNLNEA-ASGIIDHNPGTPGKS-PAIPKNFSFRTLEK--QFHLGDICEICKDGMEVIMEDEVTKRFSAAELPSWNLLTRTNVHYQFISLRLTIIWALGFFVRYFIFLPVRLSLVVLGFLIIFISMALAPHISNEATRKTISNWGTLLGFRILARGISAVVRFHNRENMAQGGGLCVANHTSPLDAILLACDRNYALXXXXXXXXXXXXXKALLKAQDHIFFERGEMKDRMLVVRRMREHVEDPNKNPILIFPEGTCINNTSVMMFKKGSFEVGGTIYPVAIKYDATFGNAFWNSMKEPMLTYLINMMTSWAIVCDVWYMPPTEILENENAIMFANRVKSDIAKKXXXXXXXXXXXXKRASVPTKLKEQEQKKYAKNI 1886
+++PA F +S G+R Y++ L K+F + RM+ KN+ L + +GII +P + + I ++ S + L+ +F L DI C+ GME IM+DEVTKRFSA EL SWNLL+RTN ++Q+ISLRLT++W LG +RY LP+R++L G ++ + + ++ N ++ +S L+ +RI R ++A++ +H+REN + GG+CVANHTSP+D I+LA D YA++GQ+ GG+MG++Q+A++KA H++FER E+KDR LV +R+ EHV+D +K PILIFPEGTCINNTSVMMFKKGSFE+G T+YPVAIKYD FG+AFWNS K M+TYL+ MMTSWAIVC VWY+PP +E+A+ FANRVKS IA++GGLVDL+WDGGLKR V KE++QK Y+K I
Sbjct: 30 IIVPAIFGVSFGIRKLYMKSLLKIFAWATLRMERGAKEKNHQLYKPYTNGIIAKDPTSLEEEIKEIRRSGSSKALDNTPEFELSDIFYFCRKGMETIMDDEVTKRFSAEELESWNLLSRTNYNFQYISLRLTVLWGLGVLIRYCFLLPLRIALAFTGISLLVVGTTVVGYLPNGRFKEFMSKHVHLMCYRICVRALTAIITYHDRENRPRNGGICVANHTSPIDVIILASDGYYAMVGQVHGGLMGVIQRAMVKACPHVWFERSEVKDRHLVAKRLTEHVQDKSKLPILIFPEGTCINNTSVMMFKKGSFEIGATVYPVAIKYDPQFGDAFWNSSKYGMVTYLLRMMTSWAIVCSVWYLPPMTREADEDAVQFANRVKSAIARQGGLVDLLWDGGLKREKVKDTFKEEQQKLYSKMI 446 The following BLAST results are available for this feature:
BLAST of TCONS_00045888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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