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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045883 ID=TCONS_00045883|Name=TCONS_00045883|organism=Clytia hemisphaerica|type=transcript|length=2339bpRun BLAST on NCBI protein sequence of TCONS_00045883-protein >TCONS_00045883-protein ID=TCONS_00045883-protein|Name=TCONS_00045883-protein|organism=Clytia hemisphaerica|type=polypeptide|length=778bp KNQFNFGQEMMNLYNNLLLSVKLSGYFLCKVTNISKFLEKSEFHHLPPDHRun BLAST on NCBI transcript from alignment at scaffold_102:247285..256189- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045883 ID=TCONS_00045883|Name=TCONS_00045883|organism=Clytia hemisphaerica|type=transcript|length=8905bp|location=Sequence derived from alignment at scaffold_102:247285..256189- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_102:247285..256189- >TCONS_00045883 ID=TCONS_00045883|Name=TCONS_00045883|organism=Clytia hemisphaerica|type=CDS|length=28044bp|location=Sequence derived from alignment at scaffold_102:247285..256189- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00045883 vs. Swiss-Prot (Human)
Match: BAZ1B (Tyrosine-protein kinase BAZ1B OS=Homo sapiens GN=BAZ1B PE=1 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 3.910e-25 Identity = 59/193 (30.57%), Postives = 98/193 (50.78%), Query Frame = 2
Query: 1655 IEALKADIFESSERIVQGTLGQLKRYDEWTASLTAVEETKDLKTFIIDLQKSV---FEKSFLSP------FKGFDPAFVKE-------------------WLKSVEQAETLSKLHTLYGILENSISWEKSSETLKCNACRRKQGVRNSTPMVICDGCQNAYHMNCIRPPLLEVPESVWICPRCVPKEDRRGRR 2149
+ L++D+ E + R+ +G LG ++ E+ A + ++E+ KD +I LQ SV F + F++P + D A +E W ++ +A+T S++H L G+L+ I W+ S+E +C CR+K +++CD C A+H+ C+RP L EVP+ W CP C P RR R
Sbjct: 1052 LNFLRSDLIEVATRLQKGGLGYVEETSEFEARVISLEKLKDFGECVIALQASVIKKFLQGFMAPKQKRRKLQSEDSAKTEEVDEEKKMVEEAKVASALEKWKTAIREAQTFSRMHVLLGMLDACIKWDMSAENARCKVCRKKG---EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPATARRNSR 1241 The following BLAST results are available for this feature:
BLAST of TCONS_00045883 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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