TCONS_00045869 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045869
Unique NameTCONS_00045869
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045869 ID=TCONS_00045869|Name=TCONS_00045869|organism=Clytia hemisphaerica|type=transcript|length=2786bp
CCGTGTAACAATTAAATACAAACAATAAGGTAATGACATCATACGGTACA
ACAAACTCGATCAACGATGGTCCCGACGATCACCAAGACCTTGGTGACTT
GCCACACGAAAACACTCCTCTCCTGCACACTGATTCATTCGAAGAACAAA
CAAATACACcggtaaaaaatattgaaatcacACCAAGCACACGTCGCTAT
ATGTACCGTGATCCGAATCAACCAAAACGTGAACGCAACTATTCTCAATA
CTCGACGGCTTCCTCACGCACACGTGTCGGATCACTAATCAGTAGCGTGA
CACACACGATTTCTACATCCGTCCGTAAACTACAAAAAAGTGTTGGGTTT
TTGCAAGGTTTTACCCTCATTGTTGGAATCCTTATTGGGTCGGGTGTCTT
TATTTCACCTTCATTGGTGATGCAAAGTACGCACGATGCTGGAATCTCCT
TTGTGCTTTGGTTCGCTTGTGGTCTGATCGCACTTGGTGGGTCACTCTGT
TATGTTGAACTGGGTTGCGCCATTAAAAGAGCTGGAGgaaattatGCATA
CATTCAAGAAGCTTACGGAGACTTGCCAGCTTTTCTTTGTTGTTGGACTG
TGGCCTTCATTGTTGATCCTGCAGGTGTGGCAGCCATAACTCTAACCCTG
GGAACTTACGTTATAAAACCTTTTGAAGAATGGATCGAACCAAATCCTTG
GTATCCAAAATGCATAGCAGCAGGTGTTATCCTCATGATCGCGCTTGTCA
ACTGTTGGAGCGTCCGTGCGGCCACACGCGCACAAACTCTGTTTACATTT
GCACAGATTTTGTCTGTAGTGTTTGTAGTGTGTATAGGTATTTGGCAGTT
GGCAAAGGAAGGCACTGGACACATTACACACGGAATGTTTAACGTGACAA
GTTTTACTTTCAAAGATGTCGGACCTTTAGGTGCCGCTCTATATAACGGT
TTATGGGCGTACGATGGTTGGGCGTTAGTCAGTAACGTTACAGAGGAAAT
GACCAACCTGGAACGAAATCTCTTCCTCTCCATCATCACTGGCATCCCAT
TTGTTATTTGTTGTTATTTATTGGTCAATTTATCATTTCTGGCTGCTTTG
AGCGTTGAACAGATTGCTAATAGTCCTGCAGTTGCTGTGACGTTTATCGA
CAAAACTTTAGGACACAATGCTGCGTTTGCTATGCCCATATTGGTAGCTT
TATCGTGTTACGGTGCTGCAAATGGAACTGTTTTTGCGTGCGGCCGCTTA
TCATTAGCGGCGGGCCGCGAAGGCCACTTACCTGAACTTTTATCAATGAT
TCATAAGAAACGTCATACGCCCATCCCTGCTGTTATtatgacgtcaatta
tttcatTGGTGATGCTGATCCCGGACGCAAGTGGTTTAGAAACATTGATC
AGTTTCTTTAATTTCTCTTGTTGGTTTATATACGGTTTATCGTTATTTGC
AGTGGTGGTGTTGCGGATCCGCCAACCAGATTTACACCGCCCATACAAAG
TTTGGATCATAACTCCAATTTTAATGACTCTTATATCTTTGTTTCTCGTT
ATTGTCCCGTTTTTACAGAATCCGATTAACCCGTTAATTGCATCAGGTAT
GATTGCCATGGGTATACCATTCTATTTCGTGTTTGTGTACTTCGAGCCAA
AACACCCTACAGCGCTGATCGCAGCTAGAAGACGTTTTAAGAAGCGGACc
caaaaattattcaatttgGCACCATGCACTATGTAGTGATTGTGGAATTT
GATTGAGAAATAACTCGTTACCATGAATTAACTGTAGGTAATAGTTGTGC
GTATTTTGTACACAATGATGATCAATATACAGTGATGTTTTGGCCGATGA
TTAGTAACattgaatatttttggatgatgtGATCTTGTAAATAATACCAA
GAAACAGACAGCAAATTTTATAATATATTACATGAATCAAGCTCAAACAT
AAGTAACAATGCTTGTAGATCTACTCGAAGTAAGCCAACCTCCATATTTA
GGTATTGCATCCATTCTGCAGTGAGAGAAATTGTCTAACTggcttttttt
gtatttttgagtaTGATCAGTTTCTTTTCACTCATGGTAAAATCACCTTT
CGCTCAAATagaccttatcagagtttttgatttttctaaaaaagtggtgc
attgtgggattgtttcgagtgtattacaatagaattccctcgaggagttc
ctaagagatttctattgtaacacactcgaaacaatcccacaatgcatcgc
ttttttagaaaaatcaaaaactccgataaggtctattaagGGTGAAGAGT
TGCATTCTTTAATAATTCCcggtaaaaatacttttttgtgtAAAATTCAC
Ggctaattattttcattttttctagtgcaatagacgatattggctttccg
aattctccccgaatgattacccattatgcattgcgcaaaaaaattcacgg
acgatattgacttaCCGTgaattttttgcgcaatgcatcatgggtaatca
ttcggggagaattcggaaagccgatatcgtctattcctTTACTGCTATTG
AGTCTGCAGTCGATGGGTGGAGGAAGTCAATACATAAGTTAaatgaacat
tttttaaatatttttttaaaggatATATAaatacttttgataaaattata
tGATTTGTAAATACAAACATGACAATAACataacattttttgacattatt
tttttccatgattacttaaaaatctaaattataTTATACTACAAACttca
tattgaaaaaaataattattaaatattGATCGATTG
Run BLAST on NCBI

transcript from alignment at scaffold_102:94432..98888-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045869 ID=TCONS_00045869|Name=TCONS_00045869|organism=Clytia hemisphaerica|type=transcript|length=4457bp|location=Sequence derived from alignment at scaffold_102:94432..98888- (Clytia hemisphaerica)
CCGTGTAACAATTGTAAGTTAGCCCTTTATTTTTTAATTCTACCCTCTAA
TTCCTTTTAAAATCTCTTAAGCTATAAGACTTTTATTATTATTCTTCAGA
AATACAAACAATAAGGTAATGACATCATACGGTACAACAAACTCGATCAA
CGATGGTCCCGACGATCACCAAGACCTTGGTGACTTGCCACACGAAAACA
CTCCTCTCCTGCACACTGATTCATTCGAAGAACAAACAAATACACCGGTA
AAAAATATTGAAATCACACCAAGCACACGTCGCTATATGTACCGTGATCC
GAATCAACCAAAACGTGAACGCAACTATTCTCAATACTCGACGGCTTCCT
CACGCACACGTGTCGGATCACTAATCAGTAGCGTGACACACACGATTTCT
ACATCCGTCCGTAAACTACAAAAAAGTGTTGGGTTTTTGCAAGGTTTTAC
CCTCATTGTTGGAATCCTTATTGGGTCGGGTGTCTTTATTTCACCTTCAT
TGGTGATGCAAAGTACGCACGATGCTGGAATCTCCTTTGTGCTTTGGTTC
GCTTGTGGTCTGATCGCACTTGGTGGGTCACTCTGTTATGTTGAACTGGG
TTGCGCCATTAAAAGAGCTGGAGGTGAACTGTTATAACAGATTTTATCCA
CTGAGTTTTTTAGACCCTATTATATTATAGACAGTTTCCTAATTACAGCT
AACCAAAATCTTTAATCGAAGTTTCTTTTTGAAAGTTGCACCCTAATAGT
AGCACTACTCAATAGCGATGTAAATCCATCCAGAGCACTATTTTAATGGG
ATAAACTTTCACGATGATTAAATTTCGCGGATTTTATGGATTTGGGTGTC
ATCCGCGAAAATCCACGAAATTAAGTCTTGATGGGTTACTTGCATCAAAG
AGGCGCAAATAATGTGTATTTTAACAACCAACATGCATGATTTGACAGTA
AAAGTCACAAAATCGTGAAAATATTGCCAACCAATAGTGCCACCCGTGAA
ATTAAGTCCCCACGAAATTTCTGAATTTTGCAGATAGGCCTAACCGCGAA
ATTTAATCCCCGCGAAAGTTTATTCTATTAAAGTAGATGGACTATCCATG
TAATGATGTTGGTTAGTGATTAAATGACAAACACGATATTTTGATTAATC
GTTAATTGAACTACACAGGTCGTAACCGGATCAGATGAATGCTTATTTAT
TTACCTCAAAGCTTTATTTTTTCAATAATCTAAAATTTAACTATTTATTT
TCTTAGGAAATTATGCATACATTCAAGAAGCTTACGGAGACTTGCCAGCT
TTTCTTTGTTGTTGGACTGTGGCCTTCATTGTTGATCCTGCAGGTAATGA
AACTAACAGAGTTGGTAGGATTTTTAGCCAGTAGGGGTCGAAATACGAGT
CGAAATAACTTAATGAAACTCGATGGGGATTGATATTCCCATATTCTTTA
TGATTTGGGAAGTGAATTTCTCGGACGAAAATTTCATAAACGATATGCAT
CCCCTATATCAAAGAGGGTGGGTGCGTACAGCCTACCTCAACAGTCGTTT
GGAAATGTCAAAGGAGAATGAAAGAATGCTTATCAAGTGTGCCAGAAAAA
AGTATACAAGTTTTTGATCGACTTTGAATTTCAGGATTCCAAAAATGTTG
TAACATGTGTCATGTATCAAACTTAACAACATTCTGCTTTTATTTCCAGG
TGTGGCAGCCATAACTCTAACCCTGGGAACTTACGTTATAAAACCTTTTG
AAGAATGGATCGAACCAAATCCTTGGTATCCAAAATGCATAGCAGCAGGT
GTTATCCTCATGATCGCGCTTGTCAACTGTTGGAGCGTCCGTGCGGCCAC
ACGCGCACAAACTCTGTTTACATTTGCACAGATTTTGTCTGTAGTGTTTG
TAGTGTGTATAGGTATTTGGCAGTTGGCAAAGGAAGGCACTGGACACATT
ACACACGGAATGTTTAACGTGACAAGTTTTACTTTCAAAGATGTCGGACC
TTTAGGTATTTTCAATCATATCTCATATTTGCAATATAGGCCATTTCACA
GTCGGAATGGATCATGGGTAATCAGGACTGATTGCACCTCCATGACGGCT
TTATGTTGGCTAGACGCAGTAATCTTCATAATATTTCAAAACTTTGGACC
AATAGTAAGTCGCCATTAACGCGCAGTAGTCCTGATTACCCAATGGCCTA
TGGTACTTACGGCTAGCTATTCAGAAATCCGTTTAAAAATCAAACGCTTT
CATGAGCATTGATTGGTTTTATTTAGCTTGATTGCATTATGATTATGAGC
TTCAACCTATCAGATTGATTTTGGTTAATCAGCGGACTGTTAGCAAATGT
ACAAGTACAAATCAAAGAAATTGCCGTTGAAAATCTTTCCCATTCAATTT
GAGTGTAAGACCTAATTTAGACGGTCAACTTTTTGTCTATTTACTGTACC
GGCAGACGGTTGGAAATTTAATTCTTCAAAAAAGACATCACATTGAATTG
AAATAGTCAATTTCTGACGCAACCTTTATTGAAAAAGGAAGGTTGAAAAC
CGACTTAAGATTCATTAAAACTATAAACTTGATCCTCTCCTTCCTCCACA
GGTGCCGCTCTATATAACGGTTTATGGGCGTACGATGGTTGGGCGTTAGT
CAGTAACGTTACAGAGGAAATGACCAACCTGGAACGAAATCTCTTCCTCT
CCATCATCACTGGCATCCCATTTGTTATTTGTTGTTATTTATTGGTCAAT
TTATCATTTCTGGCTGCTTTGAGCGTTGAACAGATTGCTAATAGTCCTGC
AGTTGCTGTGACGTTTATCGACAAAACTTTAGGACACAATGCTGCGTTTG
CTATGCCCATATTGGTAGCTTTATCGTGTTACGGTGCTGCAAATGGAACT
GTTTTTGCGTGCGGCCGCTTATCATTAGCGGCGGGCCGCGAAGGCCACTT
ACCTGAACTTTTATCAATGATTCATAAGAAACGTCATACGCCCATCCCTG
CTGTTATTATGACGTCAATTATTTCATTGGTGATGCTGATCCCGGACGCA
AGTGGTTTAGAAACATTGATCAGTTTCTTTAATTTCTCTTGTTGGTTTAT
ATACGGTTTATCGTTATTTGCAGTGGTGGTGTTGCGGATCCGCCAACCAG
ATTTACACCGCCCATACAAAGTTTGGATCATAACTCCAATTTTAATGACT
CTTATATCTTTGTTTCTCGTTATTGTCCCGTTTTTACAGAATCCGATTAA
CCCGTTAATTGCATCAGGTATGATTGCCATGGGTATACCATTCTATTTCG
TGTTTGTGTACTTCGAGCCAAAACACCCTACAGCGCTGATCGCAGCTAGA
AGACGTTTTAAGAAGCGGACCCAAAAATTATTCAATTTGGCACCATGCAC
TATGTAGTGATTGTGGAATTTGATTGAGAAATAACTCGTTACCATGAATT
AACTGTAGGTAATAGTTGTGCGTATTTTGTACACAATGATGATCAATATA
CAGTGATGTTTTGGCCGATGATTAGTAACATTGAATATTTTTGGATGATG
TGATCTTGTAAATAATACCAAGAAACAGACAGCAAATTTTATAATATATT
ACATGAATCAAGCTCAAACATAAGTAACAATGCTTGTAGATCTACTCGAA
GTAAGCCAACCTCCATATTTAGGTATTGCATCCATTCTGCAGTGAGAGAA
ATTGTCTAACTGGCTTTTTTTGTATTTTTGAGTATGATCAGTTTCTTTTC
ACTCATGGTAAAATCACCTTTCGCTCAAATAGACCTTATCAGAGTTTTTG
ATTTTTCTAAAAAAGTGGTGCATTGTGGGATTGTTTCGAGTGTATTACAA
TAGAATTCCCTCGAGGAGTTCCTAAGAGATTTCTATTGTAACACACTCGA
AACAATCCCACAATGCATCGCTTTTTTAGAAAAATCAAAAACTCCGATAA
GGTCTATTAAGGGTGAAGAGTTGCATTCTTTAATAATTCCCGGTAAAAAT
ACTTTTTTGTGTAAAATTCACGGCTAATTATTTTCATTTTTTCTAGTGCA
ATAGACGATATTGGCTTTCCGAATTCTCCCCGAATGATTACCCATTATGC
ATTGCGCAAAAAAATTCACGGACGATATTGACTTACCGTGAATTTTTTGC
GCAATGCATCATGGGTAATCATTCGGGGAGAATTCGGAAAGCCGATATCG
TCTATTCCTTTACTGCTATTGAGTCTGCAGTCGATGGGTGGAGGAAGTCA
ATACATAAGTTAAATGAACATTTTTTAAATATTTTTTTAAAGGATATATA
AATACTTTTGATAAAATTATATGATTTGTAAATACAAACATGACAATAAC
ATAACATTTTTTGACATTATTTTTTTCCATGATTACTTAAAAATCTAAAT
TATATTATACTACAAACTTCATATTGAAAAAAATAATTATTAAATATTGA
TCGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029313XLOC_029313Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045869-exon-scaffold_102-1575043694:98876..98888TCONS_00045869-exon-scaffold_102-1575043694:98876..98888Clytia hemisphaericaexon
TCONS_00045869-exon-scaffold_102-1575043694:98266..98789TCONS_00045869-exon-scaffold_102-1575043694:98266..98789Clytia hemisphaericaexon
TCONS_00045869-exon-scaffold_102-1575043694:97546..97632TCONS_00045869-exon-scaffold_102-1575043694:97546..97632Clytia hemisphaericaexon
TCONS_00045869-exon-scaffold_102-1575043694:96884..97189TCONS_00045869-exon-scaffold_102-1575043694:96884..97189Clytia hemisphaericaexon
TCONS_00045869-exon-scaffold_102-1575043694:94432..96287TCONS_00045869-exon-scaffold_102-1575043694:94432..96287Clytia hemisphaericaexon
TCONS_00045869-exon-scaffold_102-1510915933:98876..98888TCONS_00045869-exon-scaffold_102-1510915933:98876..98888Clytia hemisphaericaexon
TCONS_00045869-exon-scaffold_102-1510915933:98266..98789TCONS_00045869-exon-scaffold_102-1510915933:98266..98789Clytia hemisphaericaexon
TCONS_00045869-exon-scaffold_102-1510915933:97546..97632TCONS_00045869-exon-scaffold_102-1510915933:97546..97632Clytia hemisphaericaexon
TCONS_00045869-exon-scaffold_102-1510915933:96884..97189TCONS_00045869-exon-scaffold_102-1510915933:96884..97189Clytia hemisphaericaexon
TCONS_00045869-exon-scaffold_102-1510915933:94432..96287TCONS_00045869-exon-scaffold_102-1510915933:94432..96287Clytia hemisphaericaexon
TCONS_00045869-exon-scaffold_102-1491911889:98876..98888TCONS_00045869-exon-scaffold_102-1491911889:98876..98888Clytia hemisphaericaexon
TCONS_00045869-exon-scaffold_102-1491911889:98266..98789TCONS_00045869-exon-scaffold_102-1491911889:98266..98789Clytia hemisphaericaexon
TCONS_00045869-exon-scaffold_102-1491911889:97546..97632TCONS_00045869-exon-scaffold_102-1491911889:97546..97632Clytia hemisphaericaexon
TCONS_00045869-exon-scaffold_102-1491911889:96884..97189TCONS_00045869-exon-scaffold_102-1491911889:96884..97189Clytia hemisphaericaexon
TCONS_00045869-exon-scaffold_102-1491911889:94432..96287TCONS_00045869-exon-scaffold_102-1491911889:94432..96287Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:94432..98888 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.15613e-07	1.02877e-06	0.0660085	0.00160121	0.859198	1.7492e-06	0.0484068	4.47122e-08	4.31051e-10	2.44514e-06	2.28359	4.61335e-06	0	0	0.000177363	0.0397744	3.90138e-05	3.61082e-09	1.27373	1.21729	4.85583e-05	0.160615	0.00930288	5.37663e-06	0.000441018	0	5.8929e-09	6.09094e-05	0.0382451	0.00068298
Blast
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BLAST of TCONS_00045869 vs. Swiss-Prot (Human)
Match: BAT1 (b(0,+)-type amino acid transporter 1 OS=Homo sapiens GN=SLC7A9 PE=1 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 3.254e-107
Identity = 181/441 (41.04%), Postives = 271/441 (61.45%), Query Frame = 3 
Query:  327 KLQKSVGFLQGFTLIVGILIGSGVFISPSLVMQSTHDAGISFVLWFACGLIALGGSLCYVELGCAIKRAGGNYAYIQEAYGDLPAFLCCWTVAFIVDPAGVAAITLTLGTYVIKPFEEWIEPNPWYPKCIAAGVILMIALVNCWSVRAATRAQTLFTFAQILSVVFVVCIGIWQLAKEGTGHITHGMFNVTSFTFKDVGPLGAALYNGLWAYDGWALVSNVTEEMTNLERNLFLSIITGIPFVICCYLLVNLSFLAALSVEQIANSPAVAVTFIDKTLGHNAAFAMPILVALSCYGAANGTVFACGRLSLAAGREGHLPELLSMIHKKRHTPIPAVIMTSIISLVMLIPDASGLETLISFFNFSCWFIYGLSLFAVVVLRIRQPDLHRPYKVWIITPILMTLISLFLVIVPFLQNPI-NPLIASGMIAMGIPFYFVFVYFE 1646
             LQK +G + G ++IVG +IGSG+F+SP  V+ +T   G   ++W ACG++A  G+LC+ ELG  I ++GG Y Y+ EAYG +PA+L  W    ++ P   A I L+   YV  PF    +P     KC+AA  IL I+ VN  SVR  +  Q +FT A+++ V  ++  G+  LA+  T +  +            VG +  A YNGLWAYDGW  ++ +TEE+ N  RNL L+II GIP V  CY+L+N+S+   ++  ++  S AVAVTF D+ L + A++ +P+ VA S  GAANGT F  GRL   AGREGH+ ++LS I  +R TP PA+I   II+ + +IP    + +L+++F+F+ W  YGL++  ++V+R  + +L RP KV ++ P+LMTLIS+FLV+ P +  P    L     I  G+ FYF+FV+++
Sbjct:   25 SLQKELGLISGISIIVGTIIGSGIFVSPKSVLSNTEAVGPCLIIWAACGVLATLGALCFAELGTMITKSGGEYPYLMEAYGPIPAYLFSWASLIVIKPTSFAIICLSFSEYVCAPFYVGCKPPQIVVKCLAAAAILFISTVNSLSVRLGSYVQNIFTAAKLVIVAIIIISGLVLLAQGNTKNFDNSFEGAQ----LSVGAISLAFYNGLWAYDGWNQLNYITEELRNPYRNLPLAIIIGIPLVTACYILMNVSYFTVMTATELLQSQAVAVTFGDRVL-YPASWIVPLFVAFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVRRLTPAPAIIFYGIIATIYIIP--GDINSLVNYFSFAAWLFYGLTILGLIVMRFTRKELERPIKVPVVIPVLMTLISVFLVLAPIISKPTWEYLYCVLFILSGLLFYFLFVHYK 458
The following BLAST results are available for this feature:
BLAST of TCONS_00045869 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BAT13.254e-10741.04b(0,+)-type amino acid transporter 1 OS=Homo sapie... [more]
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