TCONS_00045863 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045863
Unique NameTCONS_00045863
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1836

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045863 ID=TCONS_00045863|Name=TCONS_00045863|organism=Clytia hemisphaerica|type=transcript|length=1836bp
GTTTCAGGATGTGTCGATTACAAGACTTTTGATTATTGTCCTGGACAATC
TACTACACTACACCACGCACAGAAAAAAGATTATATTTGGTTTAAAGTTA
TcgcaaagcaaaaaaaaagaagcagTGAATTCGATGAAGGATTTGAAGTC
AAAAATAGCAACAGACATACTATCGAAGCTGGCAATCTACACATCAAAGA
CCTTGCACCCTCTGATCATGCATTTTACTTCTATACGCGAGCATCGACGA
CATTTCTTGAATGCCCCGACTATGAAGTTAATGTATATGAAGTAAAACCA
TTAATCAACAGAATCAAAGCTGAAGAAGGCGGTACAGTTGTTTTAAGATT
TTGGTCAAACATACCAATAAGAGAATTCAAACCTAAAGCTTCTAAGATAT
TCAAAGTGAAGGATAAAATAATGTTTGATGGTAACAATGGGGATGAAGAT
AATTATGCACTTACAAGTACTACCAAGAGCGTTAATTTTCGGTACAGATC
AGATGTTACACATAATTTCAAATATGCTGCACATACATATACAAATTTGA
CGATCCGCAACATAAAGAGGAAACAAGCAGGAGTTTGGAAAACCGAATGG
ACAACTAAAGGGTTATGCCCAAGAAATTTTTCTCTCGCTGTTCATGTGTG
GTTTGATCCTCTACCACCAACGACCACAACAACAACTACCactacaacaa
caacatcaACGACAACGACCACAACGACCACACCAACACCACCGACCACA
CCTAAACCAAAGGATCCTCTTGAATCTGGTTCCACAAAAGCAATCGGGGC
ACTTTTCATGATCGCTATTTCATGTGCTTCGGTCTTCGTTTTTTGGAAAT
TCTATCTTCAAAAAAAATTGGATGAAGAAGACTCAAAAACAACATCTGGT
GTACCAGGAGGAGGACAGCAAGGCTACCAAGCACAATACGGAATGAATGG
AGGACAGCCTTTAGGGATCCAAAAACAGATCTCAATTGGAGGAGGACAAC
AGGGTACCCAAGCCCAATTCGCAATGAATGGAGGACACCCTTTAGGAATC
CAAAAGCAGGTCTCAATTGGAGGAGGACAACAGGGTACCCAAGCCCAATT
CGCATTGAATGGAGGACAGCCTTTAGGAATCCAAAAGCAGATCTCAATTG
GAGGAGGACAACAGGGTACCCAAGCCCAATTCGCAATGAATGGAGGACAC
CCTTTAGGAATCCAAAAGCAGGTCTCAATTGGAGGAGGACAACAGGGTAC
CCAAGCCCAATTCGCATTGAATGGAGGACAGCCTTTAGGAATCCAAAAGC
AGATCTCAATTGGAGGAGGACAACAGGGTACCCAAGCCCAATTCGCAATG
AATGGAGGACACCCTTTAGGAATCCAAAAGCAGATCTCAATTGGAGGAGG
ACAACAGGGTACCCAAGCCCAATTCGCAATGAATGGAGGACAGCCTTTAG
GAATCCAAAAGCAGATCTCAATTGGAGGAGGACAACAGGGTACCCAAGCC
CAATTCGCAATGAATGGAAGGCAGCCTTTAGGAATCCAAAAGCAGATCTC
AATTGGAGGAGGACAACAGGGTACACAAGCACAATATGAAATGAATAGAG
GACAGCCTTTAGGGATCCAAAACCAGATGTCAACACAAGGAGGATGGCAG
CAGAATGGCCAAGAACAGTACGCAATGAATGGAACACATATGGCAGATAA
CCAGTATCAGATGCAAATGCAATGAGCAGGACAACAGGGTACACAACCCT
GGTAAGGAGATGATATTCTCGAATAATGAATAATAAAGATTGtcaacaaa
ttttatttttttatgaaaaatctttttatgtttgaa
Run BLAST on NCBI

transcript from alignment at scaffold_102:532264..538289+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045863 ID=TCONS_00045863|Name=TCONS_00045863|organism=Clytia hemisphaerica|type=transcript|length=6026bp|location=Sequence derived from alignment at scaffold_102:532264..538289+ (Clytia hemisphaerica)
GTTTCAGGATGTGTCGATTACAAGACTTTTGATTATTGTCCTGGACAATC
TACTACACTACACCACGCACAGAAAAAAGATTATATTTGGTTTAAAGTTA
TcgcaaagcaaaaaaaaagaagcagTGAATTCGATGAAGGATTTGAAGTC
AAAAATAGCAACAGACATACTATCGAAGCTGGCAATCTACACATCAAAGA
CCTTGCACCCTCTGATCATGCATTTTACTTCTATACGCGAGCATCGACGA
CATTTCTTGAATGCCCCGACTATGAAGTTAATGTATATGGTAAGATAAAC
GTTATTGAAtgatcattttcaatttcaaaggaAGGGTGCAGGGATGCACG
TTCTTTTATAAcaatattaaaattttttgaaacctttggatgtttctcaa
ctttttgagttttaagcctaaatatattcttaacatgttcttattttcgc
cattttttaagTATtctattttcctaaaaaaatgttcttaatacttGCCA
CATCCAAGCCTTATGTActtatatatagtttgtttttataaaaaaaagtg
tactctaaaaaatttaatttccttTTTACAGAAGTAAAACCATTAATCAA
CAGAATCAAAGCTGAAGAAGGCGGTACAGTTGTTTTAAGATTTTGGTCAA
ACATACCAATAAGAGAATTCAAACCTAAAGCTTCTAAGATATTCAAAGTG
AAGGATAAAATAATGTTTGATGGTAACAATGGGGATGAAGATAATTATGC
ACTTACAAGTACTACCAAGAGCGTTAATTTTCGGTACAGATCAGATGTTA
CACATAATTTCAAATATGCTGCACATACATATACAAGtaagttacacgtt
ttttttttttataagaacgtcaaaaattttcgaagccttcggatgttctt
atttttttggatttgaagcctaaaaatgtNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNc
ccgaagttttcctcttcgtcggtaaaatcgctataaaatcgcttaaattt
cctcattcgccgtaccagatataaaaagcttccgtcgtgcctgcatgttc
ttatatagtttgttcttataaaaaaaaacgtgtagtggtcagggtacctt
tttttacacttttatgAGTTCCAGGTAGGGTTGCATAAAGTTGACGCTCa
ctaatttgattttcaaagaggaatatgattttcatcgaataagggagtta
ATAAAGCATCGTTTCTTATTAACGGGGACTttgaatttcatcgaataaag
gaGCCTATCGAATAAAATCTGTCCCTCGTAGGTgacatttttttcggaaa
ttggGACATCCGCTAAATCAAATTCCCATCAGAATTTATCTTTTAAGGTA
TCAGTTTGAATTTTAGTGTAGTCTAAtgtcattgggcttttccagaaaaa
aaccgtatccccctgttgaggagctccaaccttttgtgaattatcccctt
ggaattccaggcaattttaggatcataccccctggaattccgaattttta
cagatttccaatcattacccccatggaattccgcttatttttgacagatt
tttgtctactgctatggaattccactgcatttcaaaccatacccccttgg
aatagaaatggactcctcaacagggggtgcacggtttttttctggaaaag
cccatttatagaaaagtttttactttaaattggCAATTAACTCACAGTAA
AAGCCcaatactttcacaaaaatgccattttatgcttcgGGTGTATCTTC
TTGTTAAATCTAGACTAAATTTTGATCCTAGCCTGAACGTATACCGTAAG
ATGATTTCCTCTAGTTTGAATCGAAGACCTCGATAGATATACTTCCAATA
AGAGACTCTTtttgctagaggatgagcagaagcctatagATTTTCTCAAA
AAGGTACCCAGCTGACACCCAACTTTGTTTCAACGTtcgtctaacgttat
atggacgttgtgaacgttagataaacgtcaaaaaaacattgtgtgccagt
tgggtaACAATATCCATGATTAAATGAAAAACACCATTTTTATAAGCGTG
TAAATGCTTAATCAGCCATTCCAGAATAAGGGATACGTTGCGTCACGCGC
ATTCTTGACTGAATACCGCCAGTAGAGACCTAGGAGCGCCGCGACCCATG
TACTATTTGATAGCAACCATAGAGGGTTCAATCGGGCATAGCTCTCCAGC
AATCGTGGTTGACATTTTCTCGGaatgaccttaatgaatgtactTCATAT
TTCTAAACATTCTAAATAGGCGGACTTAAGCAAGAATTATTTAtatatat
gtctttttttatctCATATCTAAAGATTTGACGATCCGCAACATAAAGAG
GAAACAAGCAGGAGTTTGGAAAACCGAATGGACAACTAAAGGGTTATGCC
CAAGAAATTTTTCTCTCGCTGTTCATGTGTGGTTTGATCCTCGTAAGTTA
TTCCATCatgatacacccctgtctcatttcCACTGAcctaatacacccct
gtctcagttcCACTGACctgttacacccctgtctcagttcATTGACCtga
cacacccctgtctcagtccAACTGAcctaatacacccctgtctcagttcC
ACTGACctgatacacccctgtctcagttcCACTGAActgttacacccctg
tctcagttcATTGGCCTCTCAGTCCCACTGACCtgatacatccctgtctc
agttCCACTGAcctaatacacccctgtcttagTTCCACTGACctgataca
cccctgtctcagttcATTGACCTGACACACTCCTGTCTCAGCTCCACTGA
cctaatacacccctgtctcagttaCACTGACCTGATACACCACTGTCTCA
GTTCCACTGACCTGATACACTCCTGTCTCAGTTCCACTGACCtgacacac
ccctgtctctcagTTCATTGATCtgacacacccctgtctcatttcCACTG
AcctaatacacccctgtctcagttcCACTGACctgatacacccctgtctc
agttcCACTGACCCGGTAAAATATGCAAGTCCTAAGACCCCAATGATTCC
ATTTTCACCAAGTCACGTAAGAAAGTATACTGACCACAGACGGATGCTTC
TTAGACCAAATTCATTTATAATCTATTTAATACAGTAATATTAGTGTTAC
AGGAGGATAACGTTACGgggaaaaaaaataagtttgtacAATTTACCCTT
CCAttcttttttgcttattttctactttGTCTGGAATAgccgtctagcat
gctagaccaCCACATGCTCTAACTtcccccagctggcacataacgttgtt
tcgacgtttatttaacgttcacaacgtccatataacgttagatgaacgtt
gaaacaacgttgtgtgtcagctgggtcaAACTACGGTCAATGCTTTGAGA
AGAGAAACGGTGGCGAAAAAAAcagaagtaaaattttctttttcattttg
atagTACCACCAACGACCACAACAACAACTACCactacaacaacaacatc
aACGACAACGACCACAACGACCACACCAACACCACCGACCACACCTAAAC
CAAAGGATCCTCTTGAATCTGGTTCCACAAAAGCAATCGGGGCACTTTTC
ATGATCGCTATTTCATGTGCTTCGGTCTTCGTTTTTTGGAAATTCTATCT
TCAAAAGTAAGGAGTCATTATCTGACTACGTTCTTCTTTTTCTATATAAT
ACCAATTTTATAAATTCAGGTTGAAAGTAGCATGCCATTTCACAGTTGCA
AAGcataatgggtaatcaggaccactctgttggtccaaagttttgaaaat
tctttgaagATTATTGCGTATAGCCAACAGAAATCCAgtatggaggcgca
atcagtcctgattactcaTGATcttttcgactgtgaaatggcctacaAAA
ATTTGGTATAGCATTTGAAATACCTCGATTTCGCCATAAAGGAAAAAGTG
TTCAAGATATCTTTTTCATGAAGGCTGATTGTTTTATCTACGCTTTCCAA
TGGAAGAGacacaaaaataatgaaaagattatttcaaattatttttttta
ttaagaaaGATTTTTGAATGATGAATTCGACTTTTTTAGGGACATACATA
TATTTTCAACCCGTTTCCCAATGTCTTGTCTATAAGTAAGTAAGACTGCG
ACCGCAGTCAGAggcaacccgaaggctcctctttcaatagctatctaccc
gaaggtaggggagggctccactctttctccctggattgctccacttaccc
tagcatcaagcagagaggcatcatgTACCATTTTGGCAACCTTTGGTATG
ACCCAACtaggggttgaacccacaactttgcgaaccgtagccggatgctc
taccactgcactacggtcgtcTTGGCTATAAATGAATGTTTTCTGACATT
TAGAAAATTGGATGAAGAAGACTCAAAAACAACATCTGGTGTACCAGGAG
GAGGACAGCAAGGCTACCAAGCACAATACGGAATGAATGGAGGACAGCCT
TTAGGGATCCAAAAACAGATCTCAATTGGAGGAGGACAACAGGGTACCCA
AGCCCAATTCGCAATGAATGGAGGACACCCTTTAGGAATCCAAAAGCAGG
TCTCAATTGGAGGAGGACAACAGGGTACCCAAGCCCAATTCGCATTGAAT
GGAGGACAGCCTTTAGGAATCCAAAAGCAGATCTCAATTGGAGGAGGACA
ACAGGGTACCCAAGCCCAATTCGCAATGAATGGAGGACACCCTTTAGGAA
TCCAAAAGCAGGTCTCAATTGGAGGAGGACAACAGGGTACCCAAGCCCAA
TTCGCATTGAATGGAGGACAGCCTTTAGGAATCCAAAAGCAGATCTCAAT
TGGAGGAGGACAACAGGGTACCCAAGCCCAATTCGCAATGAATGGAGGAC
ACCCTTTAGGAATCCAAAAGCAGATCTCAATTGGAGGAGGACAACAGGGT
ACCCAAGCCCAATTCGCAATGAATGGAGGACAGCCTTTAGGAATCCAAAA
GCAGATCTCAATTGGAGGAGGACAACAGGGTACCCAAGCCCAATTCGCAA
TGAATGGAAGGCAGCCTTTAGGAATCCAAAAGCAGATCTCAATTGGAGGA
GGACAACAGGGTACACAAGCACAATATGAAATGAATAGAGGACAGCCTTT
AGGGATCCAAAACCAGATGTCAACACAAGGAGGATGGCAGCAGAATGGCC
AAGAACAGTACGCAATGAATGGAACACATATGGCAGATAACCAGTATCAG
ATGCAAATGCAATGAGCAGGACAACAGGGTACACAACCCTGGTAAGGAGA
TGATATTCTCGAATAATGAATAATAAAGATTGtcaacaaattttattttt
ttatgaaaaatctttttatgtttgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029309XLOC_029309Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045863-exon-scaffold_102-1491911889:532264..532552TCONS_00045863-exon-scaffold_102-1491911889:532264..532552Clytia hemisphaericaexon
TCONS_00045863-exon-scaffold_102-1510915933:532264..532552TCONS_00045863-exon-scaffold_102-1510915933:532264..532552Clytia hemisphaericaexon
TCONS_00045863-exon-scaffold_102-1575043694:532264..532552TCONS_00045863-exon-scaffold_102-1575043694:532264..532552Clytia hemisphaericaexon
TCONS_00045863-exon-scaffold_102-1491911889:532845..533099TCONS_00045863-exon-scaffold_102-1491911889:532845..533099Clytia hemisphaericaexon
TCONS_00045863-exon-scaffold_102-1510915933:532845..533099TCONS_00045863-exon-scaffold_102-1510915933:532845..533099Clytia hemisphaericaexon
TCONS_00045863-exon-scaffold_102-1575043694:532845..533099TCONS_00045863-exon-scaffold_102-1575043694:532845..533099Clytia hemisphaericaexon
TCONS_00045863-exon-scaffold_102-1491911889:535239..535355TCONS_00045863-exon-scaffold_102-1491911889:535239..535355Clytia hemisphaericaexon
TCONS_00045863-exon-scaffold_102-1510915933:535239..535355TCONS_00045863-exon-scaffold_102-1510915933:535239..535355Clytia hemisphaericaexon
TCONS_00045863-exon-scaffold_102-1575043694:535239..535355TCONS_00045863-exon-scaffold_102-1575043694:535239..535355Clytia hemisphaericaexon
TCONS_00045863-exon-scaffold_102-1491911889:536368..536569TCONS_00045863-exon-scaffold_102-1491911889:536368..536569Clytia hemisphaericaexon
TCONS_00045863-exon-scaffold_102-1510915933:536368..536569TCONS_00045863-exon-scaffold_102-1510915933:536368..536569Clytia hemisphaericaexon
TCONS_00045863-exon-scaffold_102-1575043694:536368..536569TCONS_00045863-exon-scaffold_102-1575043694:536368..536569Clytia hemisphaericaexon
TCONS_00045863-exon-scaffold_102-1491911889:537317..538289TCONS_00045863-exon-scaffold_102-1491911889:537317..538289Clytia hemisphaericaexon
TCONS_00045863-exon-scaffold_102-1510915933:537317..538289TCONS_00045863-exon-scaffold_102-1510915933:537317..538289Clytia hemisphaericaexon
TCONS_00045863-exon-scaffold_102-1575043694:537317..538289TCONS_00045863-exon-scaffold_102-1575043694:537317..538289Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:532264..538289 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.2623	9.67306	2.22851	1.76649	4.23171	3.56521	2.61125	2.66805	0.236865	1.00311	0.00703408	0	0.0594911	0.15025	0.06821	0	0.178505	0.147651	0.18763	0.0461826	0.189746	0	30.5692	21.637	0	0.00103738	1.03266	1.59142	16.4529	28.6735
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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