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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045857 ID=TCONS_00045857|Name=TCONS_00045857|organism=Clytia hemisphaerica|type=transcript|length=1729bp
GTCATTGAGAGGTCTTGTAGGCGTAAGGTATTTTTATGCGCGTTGAAAGC
AAGAAGTGCAAAGTACTAGGATCATTATTGACATCTCAAAAAGCACATTT
GAAATAATGAAGGCCAAAGCGAAAATCGGATTTGCTGTCTTGCTGGTCAT
TTTTATTTACACGTTGTTCCCTGCCCCTTTacttcaaaagaatttttggt
CTTCAAAGTCATTTGTTGCTTTGTCAACAGTCAGCGGAGTCATCCTATTC
GTATGCTCGATAGGAAATAACATTTTGCTGGTCAGTATTTTGACAAAAGT
CCGTATTCCATTTGGGTCAGTAAATTATCTGATCATTATGATGTGTATTG
CTGATATCGTGTATCCGGTCTGTTATTTACCACTGATGTTGGGTCACACG
TGGATTATGTATACAGACGTCTGGCTGGAAATTGACATTGAGTTATTTTT
TGATTACTGGCGCTTCTTTTCTTCAGCTTATTATCTAGCCGCTGGTGTTT
CAGCGTCTACTTTCACTTTAGCCTGTGCTCAACGCACTTACACCATCGTC
ATCAAAAAGCAAGACTACATTGCTTTCAGATACAAATTTATAGCAGTTTG
TCTTTCACTAGCCTATGGTACAATTTTGTTCGTGTTAAATCAAGAGTATA
CGGATTTCTCGGAATGGGTCCATTTGTTAGACTCCATCATGATTGTATTC
TTTCCATTAACAATGAGCTTTATATTACTGGCAACTTTGATTATTTACCA
GAATTACGTACTACGTGAGCGTGTGAGTAGTCGAAATTTGAACTACGTTG
CTATATACGGTTTATATATCATCTATTTCGTTTGCTTTTTACCATTATCA
ATGGCTGAAACACTTCACCTATACATGAATCGTGTTGAATTCGAACATTA
CGTAAGATTACAATATATCTTACCTATTCTGTTCATCTTAAAAAGTCCTT
TTAATCTTATGATTGTAACATCCCTTGATAAACGATTTATGACAAAGCTG
GAAGAAATTTTTAGTAAGGTTTGTTGCTGTCAGAATTATCCTCGTGAGCC
GAACATCAATGCTGAGAACGAGACATTCCATATGTATTCGGAATTACAAG
AATTCCATTTATCGCAAAACCGTATTGATATGTATTCAGATAGTTCTGCA
GCGATGGCTGATATAAGACAACTGACAGATAACTCAGACCTACAAATGGA
CGAAACGGACTTGAGACAATTGATTATCCAAGAAAGTGTTTAGTTTGTTT
CAGCCCGATTTTTCCAGTAGGTAGATCCTGCGGTGGTTTTATAAGTGTGA
AAATGAGGAATCAGTTTATACGGCTTATAAACTGATTCGAGAAATCGAAC
ACCCAAACAGTGTTTAGTTTTTTACACCCCTGAAGTAACACGATGATTTA
ACTGGGCTAAAAACCCTGTTGTTAAAGACTTGGATTTCACACGAACCTCG
GATCGGAAGTAAAATTTACCCCCAGGTTTTCAAAAATGtaccactcgaaa
acaaagaaatcgctagattcaatccgtcataaaAAATACTGCGCACATTT
TAAAGGCTTCACTCTTTCTttcctgagaaaggttaaagattcgcctctag
ccctttgggcttataTTTCATTTGGGGTCCATTGATGTATCAATCAAGtc
atttttaaaactgtttAGTTACTAAagcaatttttctatttttttatact
ttttttccaactgattttgtagattttcg Run BLAST on NCBI protein sequence of TCONS_00045857-protein >TCONS_00045857-protein ID=TCONS_00045857-protein|Name=TCONS_00045857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
MKAKAKIGFAVLLVIFIYTLFPAPLLQKNFWSSKSFVALSTVSGVILFVC
SIGNNILLVSILTKVRIPFGSVNYLIIMMCIADIVYPVCYLPLMLGHTWI
MYTDVWLEIDIELFFDYWRFFSSAYYLAAGVSASTFTLACAQRTYTIVIK
KQDYIAFRYKFIAVCLSLAYGTILFVLNQEYTDFSEWVHLLDSIMIVFFP
LTMSFILLATLIIYQNYVLRERVSSRNLNYVAIYGLYIIYFVCFLPLSMA
ETLHLYMNRVEFEHYVRLQYILPILFILKSPFNLMIVTSLDKRFMTKLEE
IFSKVCCCQNYPREPNINAENETFHMYSELQEFHLSQNRIDMYSDSSAAM
ADIRQLTDNSDLQMDETDLRQLIIQESV Run BLAST on NCBI transcript from alignment at scaffold_102:488769..492163+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045857 ID=TCONS_00045857|Name=TCONS_00045857|organism=Clytia hemisphaerica|type=transcript|length=3395bp|location=Sequence derived from alignment at scaffold_102:488769..492163+ (Clytia hemisphaerica)
GTCATTGAGAGGTCTTGTAGGCGTAAGGTATTTTTATGCGCGTTGAAAGG
TATTTCCGACACTGTTGCTGTATCATATTTGACTACTAAACCAAGATTGC
AGTATTTGTATTTTATGTGTACCACAAATATTTGGTTGAGATTTTAGTCT
AACTTTATGATTGTTTGTGGAATTCAACAGTGTTGTTACGATCTTATCTT
CTAAACATCTTAAGACCGGCCAGTACTGGCCACATGGTATGAAATTGGCA
TCGTATTAAATTGACAAACTGAAAATAACAGAAATTAACAAATTGATTGC
AGAAAAATCTTTTACTGTAAAGACTAACAAActatatttttctttccaaC
TTTTATTTCAGCAAGAAGTGCAAAGTACTAGGATCATTATTGACATCTCA
AAAAGTACATTTGAAATAATGAAGGCCAAAGCGAAAATCGGATTTGCTGT
CTTGCTGGTCATTTTTATTTACACGTTGTTCCCTGCACCtttacttcaaa
aaaatttttggtctTCAAAGTCATTTGTTGCTTTGTCAACAGTCAGCGGA
GTCATCCTATTCGTATGCTCGATAGGAAATAACATTTTGCTGGTCAGTAT
TTTGACAAAAGTCCGTATTCCATTTGGGTCAGTAAATTATCTGATCATTA
TGATGTGTATTGCTGATATCGTGTATCCGGTCTGTTATTTACCACTGATG
TTGGGTCACACGTGGATTATGTATACAGACGTCTGGCTGGAAATTGACAT
TGAGTTATTTTTTGATTACTGGCGCTTCTTTTCTTCAGCTTATTATCTAG
CCGCTGGTGTTTCAGCGTCTACTTTCACTTTAGCCTGTGCTCAACGCACT
TACACCATCGTCATCAAAAAGCAAGACTACATAGCTTTTAGATACAAATT
TATAGCAGTTTGTCTTTCACTAGCCTATGGTACAATTTTGTTCGTGTTAA
ATCAAGAGTATACGGATTTCTCGCAATGGGTCCATTTGTTAGACTCCATC
ATGATTGTATTCTTTCCATTAACAATGAGCTTTATATTACTGGCAACTTT
GATTATTTACCAGAATTACGTACTACGTGAGCGTGTGAGTAGTCGAAATT
TGAACTACGTTGCTATATACGGTTTATATATCATCTATTTCGTTTGCTTT
TTACCATTATCAATGGCTGAAACACTTCACCTATACATGAATCGTGTTGA
ATTCGAACATTACGTAAGATTACAGTATATCTTACCTATTCTGTTCATCT
TAAAAAGTCCTTTTAATCTTATGATTGTAACATCCCTTGATAAACGATTT
ATGACAAAGCTGGAAGAAATTTTTAGTAAGGTTTGTTGCTGTCAGAATTA
TCCTCGTGAGCCGAACATCAATGCTGAGAACGAGACATTCCATATGTATT
CGGAATTACAAGAATTCCATTTATCGCAAAACCGTATTGATATGTATTCA
GATAGTTCTGCAGCGATGGCTGATATAAGACAACTGACAGATAACTCAGA
CCTACAAATGGACGAAACGGACTTGAGACAATTGATTATCCAAGAAAGTG
TTTAGTTTGTTTCAGCCCGATTTTTCCAGTAGGTAGATCCTGCGGTGGTT
TTATAAATGTGAGAATGAGGACAGCCGTATAAACTGATTCGAGAAATGGA
ACACCCAAANcccccccccccgggagacTAACAAActatatttttctttc
caaCTTTTATTTCAGCAAGAAGTGCAAAGTACTAGGATCATTATTGACAT
CTCAAAAAGCACATTTGAAATAATGAAGGCCAAAGCGAAAATCGGATTTG
CTGTCTTGCTGGTCATTTTTATTTACACGTTGTTCCCTGCCCCTTTactt
caaaagaatttttggtCTTCAAAGTCATTTGTTGCTTTGTCAACAGTCAG
CGGAGTCATCCTATTCGTATGCTCGATAGGAAATAACATTTTGCTGGTCA
GTATTTTGACAAAAGTCCGTATTCCATTTGGGTCAGTAAATTATCTGATC
ATTATGATGTGTATTGCTGATATCGTGTATCCGGTCTGTTATTTACCACT
GATGTTGGGTCACACGTGGATTATGTATACAGACGTCTGGCTGGAAATTG
ACATTGAGTTATTTTTTGATTACTGGCGCTTCTTTTCTTCAGCTTATTAT
CTAGCCGCTGGTGTTTCAGCGTCTACTTTCACTTTAGCCTGTGCTCAACG
CACTTACACCATCGTCATCAAAAAGCAAGACTACATTGCTTTCAGATACA
AATTTATAGCAGTTTGTCTTTCACTAGCCTATGGTACAATTTTGTTCGTG
TTAAATCAAGAGTATACGGATTTCTCGGAATGGGTCCATTTGTTAGACTC
CATCATGATTGTATTCTTTCCATTAACAATGAGCTTTATATTACTGGCAA
CTTTGATTATTTACCAGAATTACGTACTACGTGAGCGTGTGAGTAGTCGA
AATTTGAACTACGTTGCTATATACGGTTTATATATCATCTATTTCGTTTG
CTTTTTACCATTATCAATGGCTGAAACACTTCACCTATACATGAATCGTG
TTGAATTCGAACATTACGTAAGATTACAATATATCTTACCTATTCTGTTC
ATCTTAAAAAGTCCTTTTAATCTTATGATTGTAACATCCCTTGATAAACG
ATTTATGACAAAGCTGGAAGAAATTTTTAGTAAGGTTTGTTGCTGTCAGA
ATTATCCTCGTGAGCCGAACATCAATGCTGAGAACGAGACATTCCATATG
TATTCGGAATTACAAGAATTCCATTTATCGCAAAACCGTATTGATATGTA
TTCAGATAGTTCTGCAGCGATGGCTGATATAAGACAACTGACAGATAACT
CAGACCTACAAATGGACGAAACGGACTTGAGACAATTGATTATCCAAGAA
AGTGTTTAGTTTGTTTCAGCCCGATTTTTCCAGTAGGTAGATCCTGCGGT
GGTTTTATAAGTGTGAAAATGAGGAATCAGTTTATACGGCTTATAAACTG
ATTCGAGAAATCGAACACCCAAACAGTGTTTAGTTTTTTACACCCCTGAA
GTAACACGATGATTTAACTGGGCTAAAAACCCTGTTGTTAAAGACTTGGA
TTTCACACGAACCTCGGATCGGAAGTAAAATTTACCCCCAGGTTTTCAAA
AATGtaccactcgaaaacaaagaaatcgctagattcaatccgtcataaaA
AATACTGCGCACATTTTAAAGGCTTCACTCTTTCTttcctgagaaaggtt
aaagattcgcctctagccctttgggcttataTTTCATTTGGGGTCCATTG
ATGTATCAATCAAGtcatttttaaaactgtttAGTTACTAAagcaatttt
tctatttttttatactttttttccaactgattttgtagattttcg Coding sequence (CDS) from alignment at scaffold_102:488769..492163+ >TCONS_00045857 ID=TCONS_00045857|Name=TCONS_00045857|organism=Clytia hemisphaerica|type=CDS|length=1137bp|location=Sequence derived from alignment at scaffold_102:488769..492163+ (Clytia hemisphaerica)
ATGAAGGCCAAAGCGAAAATCGGATTTGCTGTCTTGCTGGTCATTTTTAT
TTACACGTTGTTCCCTGCCCCTTTacttcaaaagaatttttggtCTTCAA
AGTCATTTGTTGCTTTGTCAACAGTCAGCGGAGTCATCCTATTCGTATGC
TCGATAGGAAATAACATTTTGCTGGTCAGTATTTTGACAAAAGTCCGTAT
TCCATTTGGGTCAGTAAATTATCTGATCATTATGATGTGTATTGCTGATA
TCGTGTATCCGGTCTGTTATTTACCACTGATGTTGGGTCACACGTGGATT
ATGTATACAGACGTCTGGCTGGAAATTGACATTGAGTTATTTTTTGATTA
CTGGCGCTTCTTTTCTTCAGCTTATTATCTAGCCGCTGGTGTTTCAGCGT
CTACTTTCACTTTAGCCTGTGCTCAACGCACTTACACCATCGTCATCAAA
AAGCAAGACTACATTGCTTTCAGATACAAATTTATAGCAGTTTGTCTTTC
ACTAGCCTATGGTACAATTTTGTTCGTGTTAAATCAAGAGTATACGGATT
TCTCGGAATGGGTCCATTTGTTAGACTCCATCATGATTGTATTCTTTCCA
TTAACAATGAGCTTTATATTACTGGCAACTTTGATTATTTACCAGAATTA
CGTACTACGTGAGCGTGTGAGTAGTCGAAATTTGAACTACGTTGCTATAT
ACGGTTTATATATCATCTATTTCGTTTGCTTTTTACCATTATCAATGGCT
GAAACACTTCACCTATACATGAATCGTGTTGAATTCGAACATTACGTAAG
ATTACAATATATCTTACCTATTCTGTTCATCTTAAAAAGTCCTTTTAATC
TTATGATTGTAACATCCCTTGATAAACGATTTATGACAAAGCTGGAAGAA
ATTTTTAGTAAGGTTTGTTGCTGTCAGAATTATCCTCGTGAGCCGAACAT
CAATGCTGAGAACGAGACATTCCATATGTATTCGGAATTACAAGAATTCC
ATTTATCGCAAAACCGTATTGATATGTATTCAGATAGTTCTGCAGCGATG
GCTGATATAAGACAACTGACAGATAACTCAGACCTACAAATGGACGAAAC
GGACTTGAGACAATTGATTATCCAAGAAAGTGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045857-exon-scaffold_102-1491911889:488769..488817 | TCONS_00045857-exon-scaffold_102-1491911889:488769..488817 | Clytia hemisphaerica | exon |
| TCONS_00045857-exon-scaffold_102-1510915933:488769..488817 | TCONS_00045857-exon-scaffold_102-1510915933:488769..488817 | Clytia hemisphaerica | exon |
| TCONS_00045857-exon-scaffold_102-1575043694:488769..488817 | TCONS_00045857-exon-scaffold_102-1575043694:488769..488817 | Clytia hemisphaerica | exon |
| TCONS_00045857-exon-scaffold_102-1491911889:490484..492163 | TCONS_00045857-exon-scaffold_102-1491911889:490484..492163 | Clytia hemisphaerica | exon |
| TCONS_00045857-exon-scaffold_102-1510915933:490484..492163 | TCONS_00045857-exon-scaffold_102-1510915933:490484..492163 | Clytia hemisphaerica | exon |
| TCONS_00045857-exon-scaffold_102-1575043694:490484..492163 | TCONS_00045857-exon-scaffold_102-1575043694:490484..492163 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_102 | supercontig | scaffold_102:488769..492163 + |
Blast
The following BLAST results are available for this feature:
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