TCONS_00045849 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00045849
Unique Name	TCONS_00045849
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2178

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_102:395996..401450+

transcript sequence

>TCONS_00045849 ID=TCONS_00045849|Name=TCONS_00045849|organism=Clytia hemisphaerica|type=transcript|length=2178bp
aataaatattttcttctcttttgataTATCTATTTCTTATTTCTATGCCA
AAAGAAATAACTTTTTCTTGACatatgatgacatcatcatttttcaatca
ctgcgatggagagcgataACATGTTCGTTTTTAGATAAATAGCCGCCGGA
TGGAATGGTTTGTCAGTTTTAAATCAAGTACAGCACAGCAAACTGCACAG
CTGGAAAAACACTAAAGAGAGAAGAAAAGAGCAGAACAGAGTCACCTGGA
TATAACTGTCTGAACTTATTGaagatttaaaaatctatcacaacaaaaag
aaaatgaagaacttAATATGTTTATTACTGGTGATCACTCTCTACGCCAT
TACAGATGCTCGAACCATCAAAGAATTCGATTTGAAAGGTTTCCTGCAAC
GAGTAATTAAGACCAATTTGGAAGATGCACAAAACCCATGGAAAATTGGA
GAAGTCAATACCGAAAAATGTAGAGATGAATATGATTGGTGTAGTTATTA
CAAAGACCATTGTTCACATCCGACCGTTAAAACGTACTGCAAGAAATTAT
GTGGCTCTTGTCCAAAGGAGCCAGAACCAATATGCAAAGACAAATACAAT
TGcggaaatcttaaaaaatactGCAGTTACAGTCAATACAAAGATTACAT
GACAAACTATTGCCCGGCTACTTGTGGACTCTGTGGAGAGACGCTAGCCT
GTGGTGTTGCTGAAAGACGTGGATCAAAGGCTGATAATCCAATTGTTGGA
GGAGAGGATGCAAAGAAGGGACACTACCCATGGCAAGCGGCAATCTATTT
CGATGGAAGTTTTTTATGCGGTGGTTCACTCATTGATAATAAACATGTCC
TAACTGCAGCTCATTGTTTCAAATACCTGAGTACAGATCTCACTTTGTAT
AAAATCGTCCTCGGAGAACATAATCGTGATGCAGATGAAGgtacAGAAGA
AGAACGCCAGGTCACACGTATCACACAACACGAATCTTACCAATACGAAT
CAGATACTCATGATgtcgccattatggaaatgaaCAAAGAAGTCGTCTTT
GGAGCTGACATCAATGCTATTTGTTtaccaaatgaaaatgaagtgtTAAG
AGAAGGAACCAAATGTTTCATGTCAGGTTGGGGAAAATTACATAGCGGTG
GCAGCGCTGTTACACGTCTACAACACGTTGCTCTACCAATTGTCAACCGT
CAACATTGCGTTGAACGTAATACGTTTAATAGTCACACGGTAAATGATCG
TATGATTTGTGCTGGATATAACGACGGAATGAATTACCAATCTGGTTGCC
ATGGTGATTCTGGTGGCCCACTTGCATGTCAACAAACTGACGGAAGCTGG
AAATTATACGGTGTTACTAGTTGGGGATCACCACAATGTAACGGATTGAA
TCGTTATACTGTTTTTGCACGTGTTAGTAAATATACGAAATGGATTAAAG
GACAAACATCATAAGTCATCCGAGAAATCGGGACAACACTAATCGCCCAA
CCAAGCTGAAAGGAGCAAAAGAAATTATGTTTTATAATTTCAAACCTTAA
TATTTTTATACCTAGTACTGctttttagatattttgcaaattAATTTATT
CAGATGTGTACTAAATAAATAGATTGATGTACATGTATTTTGTAAGATAA
TTTTATTAACCTTTTTCTATAAGTTCAGAGACATTTGTACATAGtggttt
ttaccttttttagattttcttatTATAATCAATAGATATGCATATTTATT
TCTCTACCAAAAATTGACGCACTTGACCTACTCATTTTAGAATTCCAAAT
CCTGACCCATTAAAATAGGGTCTCTTTCCTGGGAAAAGTTGGgcgaaagt
gactaaattttaaaaaagtgataaaatctTTCTGTGACGAAAACTTCTCA
TCGTCTGATTTTTTCCCGATCAttaatttttcccttttttaattGCTGTC
GCGCTCTCCTTTTTTTACACACATTtacttgcgaattctgattcaatcta
ttcaaaaactttgacgATAAACTATAAGTCATTTTTATTCTAGAACAAAG
GGTACAATGGGGGGTGGGGTTCTCTATCTGTACATAATACAATTTCTTGC
CTTGAATTGACAGTTAAGCCAGTTGCCAGGTGTCATTTTTCTGAGATTGA
GTATTTTTGAAtatgagtttttttgaag

Run BLAST on NCBI

transcript from alignment at scaffold_102:395996..401450+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00045849 ID=TCONS_00045849|Name=TCONS_00045849|organism=Clytia hemisphaerica|type=transcript|length=5455bp|location=Sequence derived from alignment at scaffold_102:395996..401450+ (Clytia hemisphaerica)
aataaatattttcttctcttttgataTATCTATTTCTTATTTCTATGCCA
AAAGAAATAACTTTTTCTTGACatatgatgacatcatcatttttcaatca
ctgcgatggagagcgataACATGTTCGTTTTTAGATAAATAGCCGCCGGA
TGGAATGGTTTGTCAGTTTTAAATCAAGTACAGCACAGCAAACTGCACAG
CTGGAAAAACACTAAAGAGAGAAGAAAAGAGCAGAACAGAGTCACCTGGA
TATAACTGTCTGAACTTGTAAGTATCACTTTTCTTCAGTTTGTAAGTTAT
TCCTCCAGTATAAGAGTAGACTAAACCTTCCTACatttggaaaactttta
tcGGTAATTCTGATTTGGCCACATTTCACGGTCGAAAGGAAATCGTAGTT
AATCAGGACCACCACGCTCTGATAACGATTTCTGTCGTTCTAAAATTGTG
GATGTTTTTGCATCTAACCAATGGAAAGCCAGTATTAGGGTGCAAtcggt
cctgattacccatgattcatttcgacctTGAAGTGACCTATAGAAGGgat
aaagaagaaaacattAGATTACCCGCCCATCTTGAAATATAATCCTACAT
ATTTGATGAAAGATTATCATCGTCTTCTATTGTAAGACTTTTAATGTGAA
TGAGAAATCATTTTGTTTCAAGCTCCTGTGTTATTCTTAAAAATCTTCCT
ACATTTTGGTATAAATGCTGAAATCTTTGCTTTTTCTAAAATCATGTATG
CCATGtccaaaaaaacgtaaacagACGTATTACGTCAGGATGTATAGTAC
GCCTCTTTTTCATTCTCCAGAATAATTATTCCTGCTTGCAAATTAGTCAA
AACATATGCTTCCTGGCTTTAACTAACTTAATGCTGTCGAGCATGCAAGT
TAAGAACTTAAGCCAATATGTTTTGCGGTTTTTTCAACAATCAAGAATCT
AAACACATTGTAATAAAAAAACAGGAAATGGAATAAGATGTCATTCAAAT
AACAATTATGTTTTTAAAGGTCTTGTCACATcacgaaataaaaaaacttg
GCGTCCTTTCCGCTTCGCTTTATTGCGTCAAATAGTTTCAGTTTCATTCA
ATGATGATTTTGATGCTGATATCATCAAACAATTTTAATTGGATTCTAAC
CGTATAAATTCCATGGTTCCTTATTTGATTTCTCATTATCAATAAGAACT
TGAGCTTGATAAGAGCTTCAAGAGCAATACTTGAAAACTTTTACATTATG
GTTTGATAATTGCAATATGGTTACTATGTTTATCATTGCAAAGCTTGAAg
ttgaatagaccttttgaGAGGATGTTGAATAATCAAATTCTCCAAAATTA
TTTTAAGCGTGTCTTAATTTTTTCtcatcattgttttgatgcttgatttc
ttaattattcaacatgacatccgaACTTGCAAAAGGTCTATGTCACCGTT
GTCTTTTTTGGTCTGTTTttgaaatgtttcttttttcattaTCCACAGAT
TGaagatttaaaaatctatcacaacaaaaagaaaatgaagaacttAATAT
GTTTATTACTGGTGATCACTCTCTACGCCATTACAGATGCTCGAACCATC
AAAGAATTCGGTAAGAACATAATCTCTTTTGAGAGGGCTTTTGAGTTTTA
ACTGATTCCAATCACATTTCTTCCACAAATCAAATAATTTTCGATACTGT
AGATTATTTATTAAATACCTTATcgaccctttttacgccggcccttatta
cgccacagcccaaaaataacgccaataagggccggtgtaaaaagggccga
taaggtagtataAAATCGATGttcaaagttcgattagttttaTAGTCTCT
ATTATTCGTAGTTCTAAATCTCgaaaatgtctccttaacttgaaattcca
ataactcgaacaaattttgaTTCCCCGCGCGTGGTCGAGTCATGGAGACT
GCACTGTAATAAGTACCACTTAAGAGTTTATtattgtattttgttttgaa
atttgagaaaagtgttttgttttttagtCATTATCTTAattttgttgtta
ttgtttttgttgaacAGATTTGAAAGGTTTCCTGCAACGAGTAATTAAGA
CCAATTTGGAAGATGCACAAAACCCATGGAAAATTGGAGAAGTCAATACC
GGTAAGTGAACAGATTTCAACAAtgacttataaaaaaaattctttaattc
gaaatttccatgattcgaacaaatttgcgtttCCCGTGAGCTtatgagtt
atggagactccccTGTATTAGCTACGTTGGTCTACTTATAGCCATTCTGT
CTATCTTTAGATAATTCTTTGATGTCAATGCTGTATACATTTTTATGGTC
ATTCTTATACCAATTAATTTACACAATTTTGAACTGCTTCAGAAATCCGT
CTATAGCTACCAGGACTTGGATTTAATTCTTACCTTCTGTGAATAATAGA
GAATAAAAttctattgtcattttaaagaaaaaatcttcattttcctttaG
AAAAATGTAGAGATGAATATGATTGGTGTAGTTATTACAAAGACCATTGT
TCACATCCGACCGTTAAAACGTACTGCAAGAAATTATGTGGCTCTTGTCG
TAAGTTCATATTCCTCATTTGTTTATTACCCCTTTTTGGGAAGTcgttct
ttctttcctttcttGCTCTCCAAAGGTCTTCGTATGTCTGATTAAACTTC
TCGTTGTTTGTCATTACTCCCTTGAAGTTTGGAACCAGAAAGGTTTTTTG
GCCGGGGAAAACTTCTTGACTTTCCGAAAAGTCTCATCACTTTTCTCCTA
CTAATTATCCTCTCTAAGCTCATTAAAGCCATTACCAGTTCTTAAATCTT
CGTATTTTTAATTTCCTTCGTTTTCTATCCCTGTAACGGAtgataaaaaa
aacgaattgaAGACAACCAGTAAAAATTTAgaccatttttaaatttttca
cataacacttttcatttttacattACAGCAAAGGAGCCAGAACCAATATG
CAAAGACANTAAATTTTTCACGTAACGTTTTCATTTTTACATTACAGCAA
AGGAGCCAGAACCAACATGCAAAGACAAATACAATTGcggaaatcttaaa
aaatactGCAGTTACAGTCAATACAAAGATTACATGACAAACTATTGCCC
GGCTACTTGTGGACTCTGTGGAGAGACGCTAGCCTGTGGTGTTGCTGAAA
GACGTGGATCAAAGGCTGATAATCCAATTGTTGGAGGAGAGGATGCAAAG
AAGGGACACTACCCATGGCAAGCGGCAATCTATTTCGATGGAAGTTTTTT
ATGCGGTGGTTCACTCATTGATAATAAACATGTCCTAACTGCAGCTCATT
GTTTCAAATACCTGAGTACAGATCTCACTTTGTATAAAATCGTCCTCGGA
GAACATAATCGTGATGCAGATGAAGGTAAGATGTGTTTCTAAttaatgaa
ttttgaatttttgacaaCTTTGATTTGAACTTGTGATTTTTgatcgaatt
tttcaaaatatggggATTGTTTCAAAATATGAGCGTTTTGCTTACTCTCC
TCTTTTCATGTAAGGTATGGTCAAGTAAACTAAAGGAATTATTTAGTTGA
ACTCTGTGTTTCCAAGTAAGTTCCAGTAGAGGACCTAgacttagaccatg
ttcagatgTTACGGTTTCATGTCGCTCCGGTATGGTTtccgttacggatc
gagagtgctcggagcagttccgttccgatgaaaaaagtgaagcaaaaccG
TTTCGATCCGTTTTTTCTTTTGTAGCGTGACGTCATACAGCGTCATGATC
TAACATAAAAacctaacttaaaattttaggtacAGAAGAAGAACGCCAGG
TCACACGTATCACACAACACGAATCTTACCAATACGAATCAGATACTCAT
GATgtcgccattatggaaatgaaCAAAGAAGTCGTCTTTGGAGCTGACAT
CAATGCTATTTGTTtaccaaatgaaaatgaagtgtTAAGAGAAGGAACCA
AATGTTTCATGTCAGGTATGTCGAGACTTCTTTACAACCAGGCAATTCTG
AAAGTAAACCTAGCATGGTCTTGAATTATGTGTCTCTATTGGTTATCGTC
TCCACTACTCATTATGGATTCACCTCACTTGGCATATATCTTGTTATTGT
CAGTTTTAAGAGTGACGTAGATTTATGAGATCTAAATTTTAACTCCTTTT
TTGAAACCAGATTTGAATATTCTATATAAAAGAGGATCCCAGCTTAAAAC
GAAGCTTAAAGGATACTATTTAACCaatctcctaccatttgcttacaaaG
CATTTTTAAACATAAGAAAGAACAATCTTCTCCCCTTTCGGTGCAACGCG
Agcacaaatttcgaaaaagcctttttttcataatttttatttttatttga
cagGTTGGGGAAAATTACATAGCGGTGGCAGCGCTGTTACACGTCTACAA
CACGTTGCTCTACCAATTGTCAACCGTCAACATTGCGTTGAACGTAATAC
GTTTAATAGTCACACGGTAAATGATCGTATGATTTGTGCTGGATATAACG
ACGGAATGAATTACCAATCTGGTTGCCATGGTGATTCTGGTGGCCCACTT
GCATGTCAACAAACTGACGGAAGCTGGAAATTATACGGTGTTACTAGTTG
GGGATCACCACAATGTAACGGATTGAATCGTTATACTGTTTTTGCACGTG
TTAGTAAATATACGAAATGGATTAAAGGACAAACATCATAAGTCATCCGA
GAAATCGGGACAACACTAATCGCCCAACCAAGCTGAAAGGAGCAAAAGAA
ATTATGTTTTATAATTTCAAACCTTAATATTTTTATACCTAGTACTGctt
tttagatattttgcaaattAATTTATTCAGATGTGTACTAAATAAATAGA
TTGATGTACATGTATTTTGTAAGATAATTTTATTAACCTTTTTCTATAAG
TTCAGAGACATTTGTACATAGtggtttttaccttttttagattttcttat
TATAATCAATAGATATGCATATTTATTTCTCTACCAAAAATTGACGCACT
TGACCTACTCATTTTAGAATTCCAAATCCTGACCCATTAAAATAGGGTCT
CTTTCCTGGGAAAAGTTGGgcgaaagtgactaaattttaaaaaagtgata
aaatctTTCTGTGACGAAAACTTCTCATCGTCTGATTTTTTCCCGATCAt
taatttttcccttttttaattGCTGTCGCGCTCTCCTTTTTTTACACACA
TTtacttgcgaattctgattcaatctattcaaaaactttgacgATAAACT
ATAAGTCATTTTTATTCTAGAACAAAGGGTACAATGGGGGGTGGGGTTCT
CTATCTGTACATAATACAATTTCTTGCCTTGAATTGACAGTTAAGCCAGT
TGCCAGGTGTCATTTTTCTGAGATTGAGTATTTTTGAAtatgagtttttt
tgaag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029302	XLOC_029302	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_102	supercontig	scaffold_102:395996..401450 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.264241	0	0	131.194	73.637	34.4922	36.0299	60.8854	131.172	78.8567	91.5905	17.848	9.37985	0.582431	0	6.36612	3.36836	11.3125	31.2595	19.3028	25.8225	42.8135	40.1506	34.6604	26.9279	157.828	142.919	572.271	595.834

Blast

[Close]

BLAST of TCONS_00045849 vs. Swiss-Prot (Human)
Match: PRSS8 (Prostasin OS=Homo sapiens GN=PRSS8 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.615e-44
Identity = 91/269 (33.83%), Postives = 136/269 (50.56%), Query Frame = 1

Query:  676 GLCGETLACGVAERRGSKADNPIVGGEDAKKGHYPWQAAIYFDGSFLCGGSLIDNKHVLTAAHCFKYLSTDLTLYKIVLGEHNRDADEGTEEERQVTRITQHESYQYESDTHDVAIMEMNKEVVFGADINAICLPNENEVLREGTKCFMSGWGKLHSGGSAVT--RLQHVALPIVNRQHC-----VERNTFNSHTVNDRMICAGYNDGMNYQSGCHGDSGGPLACQQTDGSWKLYGVTSWGSPQCNGLNRYTVFARVSKYTKWIKGQTS 1461
            G  G    CGVA +        I GG  A  G +PWQ +I ++G  +CGGSL+  + VL+AAHCF         Y++ LG H  D+     +   +  I  H SY  E    D+A++++++ + F   I  ICLP  N     G  C ++GWG +    S +T   LQ + +P+++R+ C     ++      H V + M+CAGY +G   +  C GDSGGPL+C   +G W L G+ SWG   C   NR  V+   S Y  WI+ + +
Sbjct:   29 GAEGAEAPCGVAPQAR------ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPS-EHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPICLPAANASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNCLYNIDAKPEEPHFVQEDMVCAGYVEGG--KDACQGDSGGPLSC-PVEGLWYLTGIVSWGD-ACGARNRPGVYTLASSYASWIQSKVT 286

The following BLAST results are available for this feature:

BLAST of TCONS_00045849 vs. Swiss-Prot (Human)

BLAST of TCONS_00045849 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PRSS8	2.615e-44	33.83	Prostasin OS=Homo sapiens GN=PRSS8 PE=1 SV=1	[more]

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TCONS_00045849 (transcript) - C. hemisphaerica